More than 300 homologs were found in PanDaTox collection
for query gene Cpin_2260 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013132  Cpin_2260  response regulator receiver sensor signal transduction histidine kinase  100 
 
 
361 aa  734    Chitinophaga pinensis DSM 2588  Bacteria  normal  0.208609  normal 
 
 
-
 
NC_013730  Slin_1029  response regulator receiver sensor signal transduction histidine kinase  55.92 
 
 
371 aa  368  1e-101  Spirosoma linguale DSM 74  Bacteria  normal  0.040723  normal 
 
 
-
 
NC_013216  Dtox_3783  histidine kinase  36.41 
 
 
544 aa  207  2e-52  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.401083  normal 
 
 
-
 
NC_007517  Gmet_2639  response regulator receiver sensor signal transduction histidine kinase  34.01 
 
 
396 aa  203  5e-51  Geobacter metallireducens GS-15  Bacteria  normal  0.136447  normal  0.717158 
 
 
-
 
NC_013061  Phep_0585  ATP-binding region ATPase domain protein  34.88 
 
 
528 aa  198  1.0000000000000001e-49  Pedobacter heparinus DSM 2366  Bacteria  normal  0.215545  normal 
 
 
-
 
NC_008781  Pnap_1070  response regulator receiver sensor signal transduction histidine kinase  34.82 
 
 
402 aa  192  6e-48  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.947697  normal  0.86399 
 
 
-
 
NC_013132  Cpin_0324  response regulator receiver sensor signal transduction histidine kinase  32.76 
 
 
424 aa  188  2e-46  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.046409  normal 
 
 
-
 
NC_004578  PSPTO_2715  sensor histidine kinase/response regulator  33.33 
 
 
393 aa  183  4.0000000000000006e-45  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.615592  n/a   
 
 
-
 
NC_007005  Psyr_2448  response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal  33.59 
 
 
393 aa  183  5.0000000000000004e-45  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.760608  hitchhiker  0.00120668 
 
 
-
 
NC_007947  Mfla_2590  response regulator receiver sensor signal transduction histidine kinase  33.68 
 
 
405 aa  182  6e-45  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.413696 
 
 
-
 
NC_009441  Fjoh_3355  response regulator receiver sensor signal transduction histidine kinase  32.26 
 
 
405 aa  182  9.000000000000001e-45  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_2802  response regulator receiver sensor signal transduction histidine kinase  33.51 
 
 
406 aa  182  1e-44  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1826  response regulator receiver sensor signal transduction histidine kinase  30.94 
 
 
363 aa  176  7e-43  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_2649  response regulator receiver Signal transduction histidine kinase  32.11 
 
 
404 aa  175  9.999999999999999e-43  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.699737 
 
 
-
 
NC_009439  Pmen_0172  response regulator receiver sensor signal transduction histidine kinase  31.94 
 
 
395 aa  173  5e-42  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_2145  response regulator receiver sensor signal transduction histidine kinase  32.23 
 
 
408 aa  173  5e-42  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.001377 
 
 
-
 
NC_009507  Swit_5356  response regulator receiver sensor signal transduction histidine kinase  32 
 
 
377 aa  171  1e-41  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.940445 
 
 
-
 
NC_008576  Mmc1_3693  histidine kinase  33.59 
 
 
667 aa  171  2e-41  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_2005  response regulator receiver sensor signal transduction histidine kinase  32.41 
 
 
408 aa  170  3e-41  Pseudomonas putida F1  Bacteria  normal  normal  0.343751 
 
 
-
 
NC_002947  PP_3758  response regulator receiver sensor signal transduction histidine kinase  32.15 
 
 
408 aa  168  1e-40  Pseudomonas putida KT2440  Bacteria  normal  normal  0.734482 
 
 
-
 
NC_010002  Daci_3828  response regulator receiver sensor signal transduction histidine kinase  31.62 
 
 
392 aa  168  1e-40  Delftia acidovorans SPH-1  Bacteria  normal  0.287383  normal  0.140943 
 
 
-
 
NC_010501  PputW619_2109  response regulator receiver sensor signal transduction histidine kinase  30.91 
 
 
408 aa  167  2e-40  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_007614  Nmul_A1289  multi-sensor signal transduction histidine kinase  35.71 
 
 
662 aa  166  5.9999999999999996e-40  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_4249  ATP-binding region ATPase domain protein  32.43 
 
 
374 aa  166  5.9999999999999996e-40  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_3767  response regulator receiver sensor hybrid histidine kinase  31.74 
 
 
587 aa  165  1.0000000000000001e-39  Cyanothece sp. PCC 7425  Bacteria  normal  0.634012  normal 
 
 
-
 
NC_008752  Aave_3993  response regulator receiver sensor signal transduction histidine kinase  32.04 
 
 
390 aa  165  1.0000000000000001e-39  Acidovorax citrulli AAC00-1  Bacteria  normal  0.967169  normal 
 
 
-
 
NC_011984  Avi_9098  bacteriophytochrome protein  32.23 
 
 
378 aa  161  2e-38  Agrobacterium vitis S4  Bacteria  normal  0.384054  n/a   
 
 
-
 
NC_011992  Dtpsy_0629  response regulator receiver sensor signal transduction histidine kinase  31.97 
 
 
382 aa  159  5e-38  Acidovorax ebreus TPSY  Bacteria  normal  0.67365  n/a   
 
 
-
 
NC_006369  lpl2074  sensor histidine kinase  30.73 
 
 
816 aa  159  9e-38  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_012918  GM21_0975  response regulator receiver sensor signal transduction histidine kinase  31.65 
 
 
383 aa  157  2e-37  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_006368  lpp2084  sensor histidine kinase  30.9 
 
 
816 aa  157  3e-37  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_008782  Ajs_0650  response regulator receiver sensor signal transduction histidine kinase  31.69 
 
 
382 aa  157  4e-37  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_0959  response regulator receiver sensor signal transduction histidine kinase  31.59 
 
 
372 aa  156  5.0000000000000005e-37  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_3274  response regulator receiver sensor signal transduction histidine kinase  30.67 
 
 
383 aa  155  1e-36  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_1419  PAS/PAC sensor signal transduction histidine kinase  36.87 
 
 
831 aa  153  5e-36  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_014230  CA2559_11543  sensory transduction histidine kinase  37.44 
 
 
952 aa  151  1e-35  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.166055  n/a   
 
 
-
 
NC_011729  PCC7424_1976  multi-sensor signal transduction histidine kinase  36.53 
 
 
1383 aa  149  9e-35  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.624185 
 
 
-
 
NC_010571  Oter_0809  response regulator receiver sensor signal transduction histidine kinase  31.87 
 
 
367 aa  147  2.0000000000000003e-34  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_6548  response regulator receiver sensor signal transduction histidine kinase  31.03 
 
 
397 aa  147  3e-34  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.543575 
 
 
-
 
NC_013440  Hoch_2075  response regulator receiver sensor hybrid histidine kinase  31.77 
 
 
572 aa  144  2e-33  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_4229  response regulator receiver sensor signal transduction histidine kinase  30.79 
 
 
383 aa  144  2e-33  'Nostoc azollae' 0708  Bacteria  normal  0.599633  n/a   
 
 
-
 
NC_014230  CA2559_11588  two-component sensor histidine kinase  32.92 
 
 
403 aa  144  3e-33  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.339726  n/a   
 
 
-
 
NC_009012  Cthe_0286  response regulator receiver sensor signal transduction histidine kinase  29.77 
 
 
424 aa  143  5e-33  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.136894  n/a   
 
 
-
 
NC_007519  Dde_1941  response regulator receiver sensor signal transduction histidine kinase  30.77 
 
 
395 aa  141  1.9999999999999998e-32  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.0596409  n/a   
 
 
-
 
NC_011729  PCC7424_0500  response regulator receiver sensor signal transduction histidine kinase  30.66 
 
 
373 aa  141  1.9999999999999998e-32  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011729  PCC7424_3765  multi-sensor signal transduction histidine kinase  36.4 
 
 
562 aa  141  1.9999999999999998e-32  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.13531 
 
 
-
 
NC_011729  PCC7424_5079  multi-sensor signal transduction histidine kinase  35.75 
 
 
695 aa  140  3e-32  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.929766 
 
 
-
 
NC_013132  Cpin_3745  response regulator receiver sensor signal transduction histidine kinase  30.29 
 
 
1010 aa  140  3e-32  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.412805  hitchhiker  0.00597184 
 
 
-
 
NC_011729  PCC7424_4442  multi-sensor signal transduction histidine kinase  37.79 
 
 
1267 aa  140  3.9999999999999997e-32  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011726  PCC8801_1483  response regulator receiver sensor signal transduction histidine kinase  28.89 
 
 
374 aa  140  3.9999999999999997e-32  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1510  response regulator receiver sensor signal transduction histidine kinase  28.89 
 
 
374 aa  140  3.9999999999999997e-32  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_006369  lpl2377  hypothetical protein  36.41 
 
 
425 aa  139  7.999999999999999e-32  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_013440  Hoch_2175  response regulator receiver sensor signal transduction histidine kinase  29.08 
 
 
395 aa  139  7.999999999999999e-32  Haliangium ochraceum DSM 14365  Bacteria  normal  0.924768  normal  0.400775 
 
 
-
 
NC_008346  Swol_2132  bacteriophytochrome-like protein  35.65 
 
 
727 aa  139  7.999999999999999e-32  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.205555  n/a   
 
 
-
 
NC_013158  Huta_1868  PAS/PAC sensor signal transduction histidine kinase  27.7 
 
 
385 aa  139  7.999999999999999e-32  Halorhabdus utahensis DSM 12940  Archaea  normal  0.34075  n/a   
 
 
-
 
NC_006368  lpp2524  hypothetical protein  38.07 
 
 
425 aa  139  8.999999999999999e-32  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_1003  multi-sensor Signal transduction histidine kinase  37.56 
 
 
751 aa  138  1e-31  Anabaena variabilis ATCC 29413  Bacteria  normal  0.972748  hitchhiker  0.000165551 
 
 
-
 
NC_007952  Bxe_B1219  response regulator receiver sensor signal transduction histidine kinase  28.27 
 
 
375 aa  138  1e-31  Burkholderia xenovorans LB400  Bacteria  normal  0.745377  normal  0.599724 
 
 
-
 
NC_010505  Mrad2831_5224  PAS/PAC sensor signal transduction histidine kinase  34.69 
 
 
374 aa  138  2e-31  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_013743  Htur_0970  multi-sensor signal transduction histidine kinase  33.59 
 
 
729 aa  138  2e-31  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_010676  Bphyt_5387  response regulator receiver sensor signal transduction histidine kinase  28.95 
 
 
375 aa  137  2e-31  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.0971839 
 
 
-
 
NC_011071  Smal_1740  response regulator receiver sensor signal transduction histidine kinase  30.65 
 
 
377 aa  138  2e-31  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.129887 
 
 
-
 
NC_008255  CHU_2077  sensor histidine kinase/response regulator fusion protein (sensor for arcA)  43.24 
 
 
492 aa  137  2e-31  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0651522  normal  0.191572 
 
 
-
 
NC_008700  Sama_3163  sensory box histidine kinase  33.64 
 
 
683 aa  137  2e-31  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_3323  PAS/PAC sensor signal transduction histidine kinase  32.36 
 
 
445 aa  138  2e-31  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_8461  Bacteriophytochrome (light-regulated signal transduction histidine kinase)-like protein  31.67 
 
 
528 aa  137  3.0000000000000003e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013743  Htur_2774  multi-sensor signal transduction histidine kinase  33.06 
 
 
535 aa  136  5e-31  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_008576  Mmc1_3271  PAS/PAC sensor hybrid histidine kinase  30.57 
 
 
1691 aa  136  6.0000000000000005e-31  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_1810  PAS/PAC sensor signal transduction histidine kinase  38.26 
 
 
488 aa  136  7.000000000000001e-31  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.081179 
 
 
-
 
NC_013743  Htur_2907  multi-sensor signal transduction histidine kinase  32.95 
 
 
520 aa  136  7.000000000000001e-31  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_007413  Ava_1559  PAS/PAC sensor Signal transduction histidine kinase  36.53 
 
 
508 aa  135  9.999999999999999e-31  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0906975 
 
 
-
 
NC_010623  Bphy_4207  response regulator receiver sensor signal transduction histidine kinase  28.53 
 
 
370 aa  135  9.999999999999999e-31  Burkholderia phymatum STM815  Bacteria  normal  normal  0.728065 
 
 
-
 
NC_009654  Mmwyl1_2786  PAS/PAC sensor signal transduction histidine kinase  36.48 
 
 
496 aa  134  1.9999999999999998e-30  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00094173  normal 
 
 
-
 
NC_008553  Mthe_1517  integral membrane sensor signal transduction histidine kinase  34.76 
 
 
607 aa  134  1.9999999999999998e-30  Methanosaeta thermophila PT  Archaea  normal  0.0233222  n/a   
 
 
-
 
NC_008553  Mthe_1524  integral membrane sensor signal transduction histidine kinase  34.76 
 
 
607 aa  134  1.9999999999999998e-30  Methanosaeta thermophila PT  Archaea  normal  n/a   
 
 
-
 
NC_008553  Mthe_1531  integral membrane sensor signal transduction histidine kinase  34.76 
 
 
607 aa  134  1.9999999999999998e-30  Methanosaeta thermophila PT  Archaea  normal  n/a   
 
 
-
 
NC_013739  Cwoe_5360  multi-sensor signal transduction histidine kinase  29.01 
 
 
515 aa  134  3e-30  Conexibacter woesei DSM 14684  Bacteria  normal  0.183815  normal 
 
 
-
 
NC_011729  PCC7424_5112  multi-sensor signal transduction histidine kinase  35.32 
 
 
1252 aa  134  3e-30  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.758591 
 
 
-
 
NC_010510  Mrad2831_6177  PAS/PAC sensor signal transduction histidine kinase  34.16 
 
 
422 aa  134  3e-30  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.5027  normal  0.54606 
 
 
-
 
NC_014248  Aazo_0932  response regulator receiver sensor signal transduction histidine kinase  28.11 
 
 
374 aa  133  5e-30  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_013743  Htur_1021  multi-sensor signal transduction histidine kinase  34.15 
 
 
960 aa  132  6e-30  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_009675  Anae109_2235  multi-sensor signal transduction histidine kinase  50.75 
 
 
716 aa  133  6e-30  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.530022  normal  0.014643 
 
 
-
 
NC_013922  Nmag_0435  integral membrane sensor signal transduction histidine kinase  34.32 
 
 
409 aa  132  6e-30  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_013132  Cpin_2687  response regulator receiver sensor signal transduction histidine kinase  28.57 
 
 
1013 aa  132  6.999999999999999e-30  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.70216  normal 
 
 
-
 
NC_011891  A2cp1_4275  multi-sensor signal transduction histidine kinase  48.32 
 
 
712 aa  132  9e-30  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_1562  response regulator receiver Signal transduction histidine kinase  28.45 
 
 
369 aa  132  1.0000000000000001e-29  Anabaena variabilis ATCC 29413  Bacteria  normal  0.847548  normal  0.236297 
 
 
-
 
NC_011729  PCC7424_2188  response regulator receiver sensor signal transduction histidine kinase  27.06 
 
 
384 aa  131  1.0000000000000001e-29  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00677544 
 
 
-
 
NC_007650  BTH_II1007  sensory box histidine kinase  32.2 
 
 
812 aa  132  1.0000000000000001e-29  Burkholderia thailandensis E264  Bacteria  normal  0.572876  n/a   
 
 
-
 
NC_013161  Cyan8802_4151  multi-sensor signal transduction histidine kinase  34.62 
 
 
760 aa  131  2.0000000000000002e-29  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.193587 
 
 
-
 
NC_013132  Cpin_2165  histidine kinase  32.42 
 
 
489 aa  131  2.0000000000000002e-29  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_4111  multi-sensor signal transduction histidine kinase  34.62 
 
 
760 aa  131  2.0000000000000002e-29  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007760  Adeh_4121  multi-sensor signal transduction histidine kinase  47.65 
 
 
712 aa  131  2.0000000000000002e-29  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.6651  n/a   
 
 
-
 
NC_010571  Oter_3856  response regulator receiver sensor signal transduction histidine kinase  28.85 
 
 
378 aa  131  2.0000000000000002e-29  Opitutus terrae PB90-1  Bacteria  normal  normal  0.215089 
 
 
-
 
NC_007948  Bpro_3898  multi-sensor signal transduction histidine kinase  28.85 
 
 
1003 aa  130  2.0000000000000002e-29  Polaromonas sp. JS666  Bacteria  normal  0.504038  normal  0.0804481 
 
 
-
 
NC_009438  Sputcn32_3330  multi-sensor signal transduction histidine kinase  32.03 
 
 
717 aa  131  2.0000000000000002e-29  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_4252  multi-sensor signal transduction histidine kinase  48.32 
 
 
712 aa  131  2.0000000000000002e-29  Anaeromyxobacter sp. K  Bacteria  normal  0.374039  n/a   
 
 
-
 
NC_008553  Mthe_0630  multi-sensor signal transduction histidine kinase  31.51 
 
 
713 aa  130  4.0000000000000003e-29  Methanosaeta thermophila PT  Archaea  normal  0.908922  n/a   
 
 
-
 
NC_007484  Noc_1703  PAS sensor, signal transduction histidine kinase  30.24 
 
 
368 aa  130  5.0000000000000004e-29  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.301457  n/a   
 
 
-
 
NC_013440  Hoch_6238  histidine kinase  28.26 
 
 
519 aa  129  6e-29  Haliangium ochraceum DSM 14365  Bacteria  normal  0.547868  normal 
 
 
-
 
NC_014230  CA2559_12648  Signal Transduction Histidine Kinase (STHK) with CheB and CheRactivity  39.47 
 
 
1200 aa  129  6e-29  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
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