More than 300 homologs were found in PanDaTox collection
for query gene Cpin_0010 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_013132  Cpin_0010  two component transcriptional regulator, LuxR family  100 
 
 		 219 aa  449  1e-125  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013132  Cpin_6821  two component transcriptional regulator, LuxR family  46.48 
 
 		 225 aa  205  5e-52  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.121688  normal  0.121136 
 
 
-
 
NC_013132  Cpin_1556  two component transcriptional regulator, LuxR family  44.75 
 
 		 222 aa  200  1.9999999999999998e-50  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009441  Fjoh_2973  two component LuxR family transcriptional regulator  44.04 
 
 		 216 aa  186  2e-46  Flavobacterium johnsoniae UW101  Bacteria  normal  1  n/a   
 
 
-
 
NC_013132  Cpin_4294  two component transcriptional regulator, LuxR family  40.65 
 
 		 218 aa  174  8e-43  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.81327  normal  0.0351026 
 
 
-
 
NC_009441  Fjoh_0036  two component LuxR family transcriptional regulator  35.51 
 
 		 221 aa  157  1e-37  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0464925  n/a   
 
 
-
 
NC_013730  Slin_5845  two component transcriptional regulator, LuxR family  36.99 
 
 		 219 aa  156  2e-37  Spirosoma linguale DSM 74  Bacteria  normal  1  normal  0.715181 
 
 
-
 
NC_013132  Cpin_5476  two component transcriptional regulator, LuxR family  35.81 
 
 		 219 aa  155  5.0000000000000005e-37  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  0.21854 
 
 
-
 
NC_013132  Cpin_2907  two component transcriptional regulator, LuxR family  35.85 
 
 		 222 aa  147  2.0000000000000003e-34  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0590247  normal  1 
 
 
-
 
NC_013037  Dfer_2963  two component transcriptional regulator, LuxR family  33.64 
 
 		 219 aa  139  1.9999999999999998e-32  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  36.02 
 
 		 211 aa  133  1.9999999999999998e-30  Halothermothrix orenii H 168  Bacteria  normal  1  n/a   
 
 
-
 
NC_013131  Caci_7589  two component transcriptional regulator, LuxR family  33.18 
 
 		 225 aa  131  6.999999999999999e-30  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.438424  normal  0.37363 
 
 
-
 
NC_007644  Moth_0975  two component LuxR family transcriptional regulator  36.92 
 
 		 222 aa  131  1.0000000000000001e-29  Moorella thermoacetica ATCC 39073  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009523  RoseRS_1984  two component LuxR family transcriptional regulator  35.02 
 
 		 220 aa  129  4.0000000000000003e-29  Roseiflexus sp. RS-1  Bacteria  normal  0.178457  normal  0.123783 
 
 
-
 
NC_009487  SaurJH9_1902  two component LuxR family transcriptional regulator  34.6 
 
 		 207 aa  127  1.0000000000000001e-28  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.00000041006  n/a   
 
 
-
 
NC_009632  SaurJH1_1936  response regulator receiver  34.6 
 
 		 207 aa  127  1.0000000000000001e-28  Staphylococcus aureus subsp. aureus JH1  Bacteria  unclonable  0.000000150819  n/a   
 
 
-
 
NC_010506  Swoo_3747  two component LuxR family transcriptional regulator  35.71 
 
 		 206 aa  126  2.0000000000000002e-28  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008148  Rxyl_1550  two component LuxR family transcriptional regulator  33.49 
 
 		 220 aa  125  3e-28  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  32.44 
 
 		 224 aa  125  4.0000000000000003e-28  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009767  Rcas_4227  two component LuxR family transcriptional regulator  33.33 
 
 		 213 aa  125  4.0000000000000003e-28  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  0.624898 
 
 
-
 
NC_009767  Rcas_3262  two component LuxR family transcriptional regulator  34.12 
 
 		 222 aa  123  2e-27  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  0.764026 
 
 
-
 
NC_009441  Fjoh_1987  two component LuxR family transcriptional regulator  33.01 
 
 		 213 aa  122  3e-27  Flavobacterium johnsoniae UW101  Bacteria  normal  0.429674  n/a   
 
 
-
 
NC_013510  Tcur_4038  two component transcriptional regulator, LuxR family  32.71 
 
 		 253 aa  122  4e-27  Thermomonospora curvata DSM 43183  Bacteria  normal  1  n/a   
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  31.9 
 
 		 216 aa  122  5e-27  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_010718  Nther_2325  two component transcriptional regulator, LuxR family  29.36 
 
 		 228 aa  121  9.999999999999999e-27  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009953  Sare_4214  two component LuxR family transcriptional regulator  34.93 
 
 		 228 aa  120  9.999999999999999e-27  Salinispora arenicola CNS-205  Bacteria  normal  0.0601429  normal  0.0532868 
 
 
-
 
NC_003295  RSc0292  response regulator transcription regulator protein  34.91 
 
 		 210 aa  120  1.9999999999999998e-26  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008009  Acid345_4290  two component LuxR family transcriptional regulator  32.06 
 
 		 218 aa  120  1.9999999999999998e-26  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009380  Strop_3824  response regulator receiver  33.8 
 
 		 228 aa  120  1.9999999999999998e-26  Salinispora tropica CNB-440  Bacteria  normal  0.206519  normal  1 
 
 
-
 
NC_008578  Acel_1760  two component LuxR family transcriptional regulator  33.18 
 
 		 303 aa  119  3e-26  Acidothermus cellulolyticus 11B  Bacteria  normal  1  normal  0.887336 
 
 
-
 
NC_010682  Rpic_0145  two component transcriptional regulator, LuxR family  34.91 
 
 		 210 aa  119  3.9999999999999996e-26  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_003910  CPS_1260  putative nitrate/nitrite DNA-binding response regulator  36.71 
 
 		 206 aa  118  6e-26  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_007333  Tfu_2491  LuxR response regulator receiver  33.02 
 
 		 242 aa  118  6e-26  Thermobifida fusca YX  Bacteria  normal  0.470277  n/a   
 
 
-
 
NC_009921  Franean1_5840  two component LuxR family transcriptional regulator  33.64 
 
 		 237 aa  118  7e-26  Frankia sp. EAN1pec  Bacteria  normal  0.0206065  normal  0.380036 
 
 
-
 
NC_009253  Dred_2108  two component LuxR family transcriptional regulator  30.14 
 
 		 218 aa  118  7.999999999999999e-26  Desulfotomaculum reducens MI-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_012856  Rpic12D_0153  two component transcriptional regulator, LuxR family  34.91 
 
 		 210 aa  117  9.999999999999999e-26  Ralstonia pickettii 12D  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007777  Francci3_0765  two component LuxR family transcriptional regulator  33.64 
 
 		 237 aa  117  9.999999999999999e-26  Frankia sp. CcI3  Bacteria  normal  0.272345  normal  1 
 
 
-
 
NC_013947  Snas_6085  two component transcriptional regulator, LuxR family  34.88 
 
 		 217 aa  117  9.999999999999999e-26  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009675  Anae109_1385  two component LuxR family transcriptional regulator  31.46 
 
 		 212 aa  117  9.999999999999999e-26  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014165  Tbis_0775  LuxR family two component transcriptional regulator  31.78 
 
 		 234 aa  116  1.9999999999999998e-25  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  0.336237 
 
 
-
 
NC_011830  Dhaf_1194  two component transcriptional regulator, LuxR family  34.86 
 
 		 217 aa  117  1.9999999999999998e-25  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.272513  n/a   
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  30.33 
 
 		 216 aa  117  1.9999999999999998e-25  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_003909  BCE_5540  DNA-binding response regulator  31.16 
 
 		 215 aa  116  3e-25  Bacillus cereus ATCC 10987  Bacteria  normal  1  n/a   
 
 
-
 
NC_008044  TM1040_0876  two component LuxR family transcriptional regulator  30.73 
 
 		 233 aa  116  3e-25  Ruegeria sp. TM1040  Bacteria  normal  0.481499  normal  0.345787 
 
 
-
 
NC_008255  CHU_1317  response regulator  33.03 
 
 		 220 aa  116  3e-25  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.500574  normal  0.0503905 
 
 
-
 
NC_009654  Mmwyl1_0679  two component LuxR family transcriptional regulator  33.49 
 
 		 213 aa  116  3e-25  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_005945  BAS5263  DNA-binding response regulator  31.16 
 
 		 215 aa  115  3.9999999999999997e-25  Bacillus anthracis str. Sterne  Bacteria  normal  0.24037  n/a   
 
 
-
 
NC_005957  BT9727_5091  response regulator  31.16 
 
 		 215 aa  115  3.9999999999999997e-25  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  1  n/a   
 
 
-
 
NC_006274  BCZK5108  response regulator  31.16 
 
 		 215 aa  115  3.9999999999999997e-25  Bacillus cereus E33L  Bacteria  decreased coverage  0.00235048  n/a   
 
 
-
 
NC_011773  BCAH820_5506  DNA-binding response regulator  31.16 
 
 		 215 aa  115  3.9999999999999997e-25  Bacillus cereus AH820  Bacteria  n/a    normal  1 
 
 
-
 
NC_007530  GBAA_5661  DNA-binding response regulator  31.16 
 
 		 215 aa  115  3.9999999999999997e-25  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  1  n/a   
 
 
-
 
NC_011138  MADE_03853  transcriptional regulator NarL  31.46 
 
 		 217 aa  115  5e-25  Alteromonas macleodii 'Deep ecotype'  Bacteria  unclonable  0.0000020037  n/a   
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  31.65 
 
 		 223 aa  115  5e-25  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  0.0556432 
 
 
-
 
NC_008346  Swol_0186  response regulator receiver protein  31.31 
 
 		 213 aa  115  5e-25  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  decreased coverage  0.00000327076  n/a   
 
 
-
 
NC_009675  Anae109_1810  two component LuxR family transcriptional regulator  32.73 
 
 		 218 aa  115  5e-25  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010625  Bphy_5911  two component LuxR family transcriptional regulator  32.38 
 
 		 219 aa  115  5e-25  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013205  Aaci_0516  two component transcriptional regulator, LuxR family  29.86 
 
 		 231 aa  115  6e-25  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  1  n/a   
 
 
-
 
NC_013730  Slin_6441  two component transcriptional regulator, LuxR family  35.51 
 
 		 213 aa  115  6e-25  Spirosoma linguale DSM 74  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002976  SERP1384  LuxR family DNA-binding response regulator  33.18 
 
 		 207 aa  115  6.9999999999999995e-25  Staphylococcus epidermidis RP62A  Bacteria  hitchhiker  0.000639089  n/a   
 
 
-
 
NC_011658  BCAH187_A5591  DNA-binding response regulator  30.7 
 
 		 215 aa  115  6.9999999999999995e-25  Bacillus cereus AH187  Bacteria  normal  1  n/a   
 
 
-
 
NC_008531  LEUM_1141  DNA-binding response regulator  33.49 
 
 		 210 aa  115  6.9999999999999995e-25  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  0.780315  n/a   
 
 
-
 
NC_011725  BCB4264_A5535  DNA-binding response regulator  30.23 
 
 		 215 aa  115  6.9999999999999995e-25  Bacillus cereus B4264  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_4744  response regulator receiver protein  31.58 
 
 		 209 aa  114  7.999999999999999e-25  Streptosporangium roseum DSM 43021  Bacteria  normal  0.620464  normal  0.690137 
 
 
-
 
NC_009972  Haur_2171  two component LuxR family transcriptional regulator  30.29 
 
 		 218 aa  114  7.999999999999999e-25  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0762379  n/a   
 
 
-
 
NC_011884  Cyan7425_3249  two component transcriptional regulator, LuxR family  32.83 
 
 		 211 aa  114  8.999999999999998e-25  Cyanothece sp. PCC 7425  Bacteria  normal  0.414819  normal  0.558116 
 
 
-
 
NC_009674  Bcer98_0214  two component LuxR family transcriptional regulator  31.6 
 
 		 220 aa  114  1.0000000000000001e-24  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  1  n/a   
 
 
-
 
NC_014158  Tpau_2872  two component transcriptional regulator, LuxR family  32.86 
 
 		 218 aa  114  1.0000000000000001e-24  Tsukamurella paurometabola DSM 20162  Bacteria  normal  1  n/a   
 
 
-
 
NC_009952  Dshi_2345  two component transcriptional regulator  32.08 
 
 		 220 aa  114  1.0000000000000001e-24  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.499423  normal  0.134206 
 
 
-
 
NC_011831  Cagg_2804  two component transcriptional regulator, LuxR family  32.71 
 
 		 216 aa  114  1.0000000000000001e-24  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.995251  normal  0.311692 
 
 
-
 
NC_002939  GSU3229  LuxR family DNA-binding response regulator  30.77 
 
 		 229 aa  113  2.0000000000000002e-24  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_012793  GWCH70_3043  two component transcriptional regulator, LuxR family  31.7 
 
 		 225 aa  113  2.0000000000000002e-24  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000652561  n/a   
 
 
-
 
NC_011146  Gbem_0451  two component transcriptional regulator, LuxR family  33.81 
 
 		 216 aa  113  2.0000000000000002e-24  Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
NC_013132  Cpin_4551  two component transcriptional regulator, LuxR family  31.98 
 
 		 208 aa  113  2.0000000000000002e-24  Chitinophaga pinensis DSM 2588  Bacteria  decreased coverage  0.000124934  normal  0.0275678 
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  33.01 
 
 		 228 aa  113  2.0000000000000002e-24  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010184  BcerKBAB4_5205  two component LuxR family transcriptional regulator  30.23 
 
 		 215 aa  114  2.0000000000000002e-24  Bacillus weihenstephanensis KBAB4  Bacteria  normal  1  n/a   
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  29.86 
 
 		 217 aa  113  2.0000000000000002e-24  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009483  Gura_2780  two component LuxR family transcriptional regulator  34.29 
 
 		 226 aa  113  2.0000000000000002e-24  Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_013159  Svir_00210  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  32.41 
 
 		 221 aa  112  3e-24  Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  0.133182 
 
 
-
 
NC_008309  HS_0042  nitrate/nitrite response regulator protein  33.65 
 
 		 209 aa  113  3e-24  Haemophilus somnus 129PT  Bacteria  normal  1  n/a   
 
 
-
 
NC_008527  LACR_0967  DNA-binding response regulator  34.84 
 
 		 209 aa  113  3e-24  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.598364  n/a   
 
 
-
 
NC_012918  GM21_3105  two component transcriptional regulator, LuxR family  32.29 
 
 		 223 aa  112  3e-24  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_013159  Svir_33010  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  30.7 
 
 		 223 aa  112  3e-24  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.163463  normal  1 
 
 
-
 
NC_009439  Pmen_1563  two component LuxR family transcriptional regulator  30.81 
 
 		 214 aa  112  3e-24  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  0.241819 
 
 
-
 
NC_009664  Krad_3810  two component transcriptional regulator, LuxR family  31.63 
 
 		 236 aa  112  4.0000000000000004e-24  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.225059  normal  0.0261757 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  30.81 
 
 		 224 aa  112  5e-24  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010159  YpAngola_A2794  nitrate/nitrite response regulator protein NarP  32.56 
 
 		 209 aa  112  5e-24  Yersinia pestis Angola  Bacteria  normal  1  normal  0.0858473 
 
 
-
 
NC_010465  YPK_1384  two component LuxR family transcriptional regulator  32.56 
 
 		 209 aa  112  5e-24  Yersinia pseudotuberculosis YPIII  Bacteria  normal  1  n/a   
 
 
-
 
NC_013174  Jden_1873  two component transcriptional regulator, LuxR family  31.84 
 
 		 233 aa  112  5e-24  Jonesia denitrificans DSM 20603  Bacteria  normal  0.145213  normal  0.385799 
 
 
-
 
NC_011898  Ccel_1863  two component transcriptional regulator, LuxR family  32.13 
 
 		 216 aa  112  5e-24  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00000548978  n/a   
 
 
-
 
NC_008699  Noca_1438  response regulator receiver  32.06 
 
 		 213 aa  112  5e-24  Nocardioides sp. JS614  Bacteria  normal  0.494689  n/a   
 
 
-
 
NC_009455  DehaBAV1_0632  two component LuxR family transcriptional regulator  30.43 
 
 		 224 aa  112  5e-24  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.00385785  n/a   
 
 
-
 
NC_012791  Vapar_4108  two component transcriptional regulator, LuxR family  35.38 
 
 		 210 aa  112  6e-24  Variovorax paradoxus S110  Bacteria  normal  0.755468  n/a   
 
 
-
 
NC_011831  Cagg_0340  two component transcriptional regulator, LuxR family  31.92 
 
 		 217 aa  112  6e-24  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00614189  hitchhiker  0.00317709 
 
 
-
 
NC_011772  BCG9842_B5417  DNA-binding response regulator  30.23 
 
 		 215 aa  112  6e-24  Bacillus cereus G9842  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010002  Daci_1809  two component LuxR family transcriptional regulator  34.43 
 
 		 210 aa  111  6e-24  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008463  PA14_13730  transcriptional regulator NarL  31.58 
 
 		 219 aa  112  6e-24  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  0.817999 
 
 
-
 
NC_009708  YpsIP31758_1270  nitrate/nitrite response regulator protein NarP  32.56 
 
 		 209 aa  112  6e-24  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.214676  n/a   
 
 
-
 
NC_011666  Msil_2019  two component transcriptional regulator, LuxR family  33.64 
 
 		 223 aa  111  7.000000000000001e-24  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_008781  Pnap_0922  two component LuxR family transcriptional regulator  35.38 
 
 		 210 aa  111  7.000000000000001e-24  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.114328  normal  1 
 
 
-
 
NC_010322  PputGB1_1667  two component LuxR family transcriptional regulator  31.43 
 
 		 219 aa  111  8.000000000000001e-24  Pseudomonas putida GB-1  Bacteria  normal  1  normal  0.869411 
 
 
-
 
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