More than 300 homologs were found in PanDaTox collection
for query gene Cphy_1394 on replicon NC_010001
Organism: Clostridium phytofermentans ISDg



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_010001  Cphy_1394  two component AraC family transcriptional regulator  100 
 
 		 523 aa  1064    Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0042226  n/a   
 
 
-
 
NC_010001  Cphy_0525  two component AraC family transcriptional regulator  28.36 
 
 		 522 aa  228  2e-58  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_008261  CPF_2344  AraC family DNA-binding response regulator  27.07 
 
 		 507 aa  162  1e-38  Clostridium perfringens ATCC 13124  Bacteria  normal  0.627636  n/a   
 
 
-
 
NC_008262  CPR_2056  AraC family DNA-binding response regulator  27.12 
 
 		 507 aa  159  1e-37  Clostridium perfringens SM101  Bacteria  normal  1  n/a   
 
 
-
 
NC_011898  Ccel_0944  two component transcriptional regulator, AraC family  25.18 
 
 		 539 aa  138  3.0000000000000003e-31  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_007644  Moth_2113  two component AraC family transcriptional regulator  22.39 
 
 		 548 aa  134  3e-30  Moorella thermoacetica ATCC 39073  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011898  Ccel_0995  two component transcriptional regulator, AraC family  24.04 
 
 		 542 aa  127  3e-28  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_010320  Teth514_1958  response regulator receiver protein  22.89 
 
 		 530 aa  124  4e-27  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000471781  n/a   
 
 
-
 
NC_008262  CPR_0539  AraC family DNA-binding response regulator  24.48 
 
 		 529 aa  114  4.0000000000000004e-24  Clostridium perfringens SM101  Bacteria  normal  1  n/a   
 
 
-
 
NC_008261  CPF_0555  AraC family DNA-binding response regulator  25.47 
 
 		 529 aa  111  3e-23  Clostridium perfringens ATCC 13124  Bacteria  normal  1  n/a   
 
 
-
 
NC_011898  Ccel_1982  two component transcriptional regulator, AraC family  24.19 
 
 		 544 aa  110  6e-23  Clostridium cellulolyticum H10  Bacteria  normal  0.184696  n/a   
 
 
-
 
NC_009972  Haur_2123  two component AraC family transcriptional regulator  30.95 
 
 		 414 aa  103  7e-21  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.331776  n/a   
 
 
-
 
NC_011898  Ccel_1645  two component transcriptional regulator, AraC family  24.76 
 
 		 526 aa  103  8e-21  Clostridium cellulolyticum H10  Bacteria  normal  0.168722  n/a   
 
 
-
 
NC_012034  Athe_0600  two component transcriptional regulator, AraC family  29.6 
 
 		 546 aa  102  2e-20  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
-
 
NC_008261  CPF_1111  AraC family transcriptional regulator  24.04 
 
 		 506 aa  101  3e-20  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.0000128485  n/a   
 
 
-
 
NC_011898  Ccel_1228  two component transcriptional regulator, AraC family  32.78 
 
 		 532 aa  98.6  2e-19  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_011898  Ccel_0198  two component transcriptional regulator, AraC family  33.33 
 
 		 534 aa  95.9  1e-18  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_009012  Cthe_1824  two component AraC family transcriptional regulator  34.53 
 
 		 362 aa  96.7  1e-18  Clostridium thermocellum ATCC 27405  Bacteria  decreased coverage  0.00000196685  n/a   
 
 
-
 
NC_010001  Cphy_2253  two component AraC family transcriptional regulator  39.84 
 
 		 532 aa  95.1  3e-18  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_011898  Ccel_0149  two component transcriptional regulator, AraC family  39.84 
 
 		 525 aa  91.7  3e-17  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_010320  Teth514_0399  response regulator receiver protein  40.38 
 
 		 365 aa  91.3  4e-17  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_012034  Athe_0853  two component transcriptional regulator, AraC family  37.1 
 
 		 509 aa  90.5  7e-17  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
-
 
NC_011898  Ccel_0147  two component transcriptional regulator, AraC family  36.5 
 
 		 525 aa  88.6  2e-16  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_011899  Hore_19910  response regulator receiver protein  31.47 
 
 		 386 aa  88.6  2e-16  Halothermothrix orenii H 168  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_3211  two component AraC family transcriptional regulator  35.71 
 
 		 548 aa  88.2  4e-16  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0042226  n/a   
 
 
-
 
NC_010001  Cphy_0496  two component AraC family transcriptional regulator  29.52 
 
 		 543 aa  85.9  0.000000000000002  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_011898  Ccel_2113  two component transcriptional regulator, AraC family  26.67 
 
 		 538 aa  85.9  0.000000000000002  Clostridium cellulolyticum H10  Bacteria  normal  0.141697  n/a   
 
 
-
 
NC_010001  Cphy_0618  two component AraC family transcriptional regulator  32.38 
 
 		 258 aa  85.1  0.000000000000003  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.00000605397  n/a   
 
 
-
 
NC_010001  Cphy_3282  two component AraC family transcriptional regulator  30.71 
 
 		 535 aa  82.4  0.00000000000002  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_0293  two component AraC family transcriptional regulator  38.98 
 
 		 532 aa  81.6  0.00000000000003  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_3861  two component AraC family transcriptional regulator  29.76 
 
 		 259 aa  82  0.00000000000003  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_2141  two component AraC family transcriptional regulator  36.67 
 
 		 260 aa  80.5  0.00000000000006  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_010515  Bcenmc03_3925  two component LuxR family transcriptional regulator  26.03 
 
 		 215 aa  79.3  0.0000000000002  Burkholderia cenocepacia MC0-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008543  Bcen2424_3595  two component LuxR family transcriptional regulator  26.03 
 
 		 215 aa  79.3  0.0000000000002  Burkholderia cenocepacia HI2424  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010001  Cphy_2007  two component AraC family transcriptional regulator  30.07 
 
 		 529 aa  79.3  0.0000000000002  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_1722  two component AraC family transcriptional regulator  32.77 
 
 		 508 aa  79.3  0.0000000000002  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_012034  Athe_2550  two component transcriptional regulator, AraC family  33.33 
 
 		 502 aa  77.8  0.0000000000004  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
-
 
NC_002939  GSU1891  response regulator  30.65 
 
 		 379 aa  77.8  0.0000000000004  Geobacter sulfurreducens PCA  Bacteria  normal  0.750204  n/a   
 
 
-
 
NC_011830  Dhaf_4591  two component transcriptional regulator, AraC family  28.93 
 
 		 265 aa  78.2  0.0000000000004  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_011661  Dtur_0314  two component transcriptional regulator, AraC family  35 
 
 		 494 aa  77.8  0.0000000000004  Dictyoglomus turgidum DSM 6724  Bacteria  normal  1  n/a   
 
 
-
 
NC_013411  GYMC61_2718  two component transcriptional regulator, AraC family  33.01 
 
 		 259 aa  78.2  0.0000000000004  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009457  VC0395_A1419  transcriptional regulator  31.33 
 
 		 279 aa  78.2  0.0000000000004  Vibrio cholerae O395  Bacteria  normal  1  n/a   
 
 
-
 
NC_007794  Saro_2907  two component transcriptional regulator  45.54 
 
 		 250 aa  77.4  0.0000000000006  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  1  n/a   
 
 
-
 
NC_010816  BLD_1701  AraC family DNA-binding protein  35.19 
 
 		 296 aa  77.4  0.0000000000006  Bifidobacterium longum DJO10A  Bacteria  normal  1  n/a   
 
 
-
 
NC_008609  Ppro_3046  response regulator receiver modulated metal dependent phosphohydrolase  25.08 
 
 		 365 aa  77  0.0000000000008  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0429754  n/a   
 
 
-
 
NC_010001  Cphy_3327  AraC family transcriptional regulator  40.91 
 
 		 146 aa  76.3  0.000000000001  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000116444  n/a   
 
 
-
 
NC_011146  Gbem_2122  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  30.3 
 
 		 953 aa  76.3  0.000000000001  Geobacter bemidjiensis Bem  Bacteria  normal  0.0111685  n/a   
 
 
-
 
NC_010001  Cphy_3034  two component AraC family transcriptional regulator  35.51 
 
 		 556 aa  76.3  0.000000000001  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00618221  n/a   
 
 
-
 
NC_012034  Athe_2373  two component transcriptional regulator, AraC family  35.14 
 
 		 252 aa  76.6  0.000000000001  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
-
 
NC_011830  Dhaf_3979  two component transcriptional regulator, AraC family  38 
 
 		 348 aa  76.3  0.000000000001  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_009784  VIBHAR_05185  hypothetical protein  34.95 
 
 		 280 aa  76.6  0.000000000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011898  Ccel_3249  two component transcriptional regulator, AraC family  44.21 
 
 		 531 aa  75.9  0.000000000002  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_013457  VEA_001306  putative ARAC-type regulatory protein  33.33 
 
 		 280 aa  75.5  0.000000000002  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_007404  Tbd_0904  two component Fis family transcriptional regulator  37.5 
 
 		 454 aa  74.7  0.000000000003  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.629928  normal  1 
 
 
-
 
NC_011898  Ccel_1138  two component transcriptional regulator, AraC family  30.49 
 
 		 519 aa  75.1  0.000000000003  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_012034  Athe_0937  transcriptional regulator, AraC family  36.46 
 
 		 291 aa  75.1  0.000000000003  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.440102  n/a   
 
 
-
 
NC_007511  Bcep18194_B2520  two component LuxR family transcriptional regulator  32.23 
 
 		 214 aa  74.3  0.000000000005  Burkholderia sp. 383  Bacteria  normal  0.943169  normal  0.310419 
 
 
-
 
NC_013411  GYMC61_1509  transcriptional regulator, AraC family  27.35 
 
 		 272 aa  73.6  0.000000000008  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010571  Oter_1551  two component LuxR family transcriptional regulator  33.66 
 
 		 229 aa  73.6  0.000000000008  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.460798 
 
 
-
 
NC_012034  Athe_2159  response regulator receiver protein  34.48 
 
 		 120 aa  73.6  0.000000000008  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00200925  n/a   
 
 
-
 
NC_010676  Bphyt_6314  two component transcriptional regulator, LuxR family  31.4 
 
 		 216 aa  73.6  0.000000000009  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011898  Ccel_0841  transcriptional regulator, AraC family  36.46 
 
 		 300 aa  73.6  0.00000000001  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_011898  Ccel_2452  two component transcriptional regulator, AraC family  31.67 
 
 		 509 aa  72.8  0.00000000001  Clostridium cellulolyticum H10  Bacteria  normal  0.0693402  n/a   
 
 
-
 
NC_010580  Bind_3808  AraC family transcriptional regulator  36.45 
 
 		 321 aa  73.2  0.00000000001  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.323672  normal  1 
 
 
-
 
NC_013411  GYMC61_1696  two component transcriptional regulator, winged helix family  39.05 
 
 		 224 aa  73.2  0.00000000001  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012918  GM21_2096  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  28.89 
 
 		 953 aa  72.8  0.00000000001  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000000903564 
 
 
-
 
NC_008783  BARBAKC583_1332  transcriptional regulatory protein BvrR  38.4 
 
 		 240 aa  72.8  0.00000000001  Bartonella bacilliformis KC583  Bacteria  normal  1  n/a   
 
 
-
 
NC_005957  BT9727_4562  AraC family transcriptional regulator  32.08 
 
 		 409 aa  72.4  0.00000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00627934  n/a   
 
 
-
 
NC_007643  Rru_A0919  two component AraC family transcriptional regulator  35.05 
 
 		 356 aa  72.4  0.00000000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_007925  RPC_1179  two component AraC family transcriptional regulator  26.92 
 
 		 359 aa  72  0.00000000002  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011146  Gbem_2591  two component, sigma54 specific, transcriptional regulator, Fis family  27.15 
 
 		 457 aa  72.4  0.00000000002  Geobacter bemidjiensis Bem  Bacteria  normal  0.313706  n/a   
 
 
-
 
NC_008048  Sala_2047  two component transcriptional regulator  44.55 
 
 		 236 aa  72.4  0.00000000002  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.50343  normal  0.117999 
 
 
-
 
NC_009511  Swit_0402  two component transcriptional regulator  34.21 
 
 		 235 aa  72  0.00000000002  Sphingomonas wittichii RW1  Bacteria  normal  0.344138  normal  0.0526207 
 
 
-
 
NC_008321  Shewmr4_2685  two component, sigma54 specific, Fis family transcriptional regulator  39.81 
 
 		 425 aa  72  0.00000000002  Shewanella sp. MR-4  Bacteria  normal  0.501083  normal  0.0990314 
 
 
-
 
NC_008391  Bamb_5330  two component LuxR family transcriptional regulator  27.1 
 
 		 215 aa  72.4  0.00000000002  Burkholderia ambifaria AMMD  Bacteria  normal  0.858277  normal  1 
 
 
-
 
NC_011658  BCAH187_A4969  transcriptional regulator, AraC family  32.08 
 
 		 409 aa  72.4  0.00000000002  Bacillus cereus AH187  Bacteria  normal  1  n/a   
 
 
-
 
NC_013947  Snas_2961  transcriptional regulator, AraC family  27.43 
 
 		 255 aa  72.8  0.00000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0159613  hitchhiker  0.000452365 
 
 
-
 
NC_009436  Ent638_0611  DNA-binding transcriptional regulator AraC  33.96 
 
 		 280 aa  72.4  0.00000000002  Enterobacter sp. 638  Bacteria  normal  0.88985  normal  0.0110602 
 
 
-
 
NC_009664  Krad_0332  response regulator receiver protein  32.33 
 
 		 806 aa  72  0.00000000003  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.112355  normal  0.937153 
 
 
-
 
NC_006274  BCZK4578  AraC family transcriptional regulator  32.08 
 
 		 409 aa  71.6  0.00000000003  Bacillus cereus E33L  Bacteria  normal  0.0591899  n/a   
 
 
-
 
NC_012669  Bcav_0936  transcriptional regulator, AraC family  30.19 
 
 		 289 aa  71.6  0.00000000003  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.352467  normal  1 
 
 
-
 
NC_002947  PP_4371  two component, sigma54 specific, transcriptional regulator, Fis family  34.65 
 
 		 451 aa  71.2  0.00000000004  Pseudomonas putida KT2440  Bacteria  normal  0.109269  normal  0.91149 
 
 
-
 
NC_012850  Rleg_2980  two component, sigma54 specific, transcriptional regulator, Fis family  30.14 
 
 		 448 aa  71.2  0.00000000004  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  0.0718905 
 
 
-
 
NC_011004  Rpal_1676  two component transcriptional regulator, LuxR family  28.78 
 
 		 228 aa  71.2  0.00000000004  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_012669  Bcav_0840  two component transcriptional regulator, winged helix family  27.03 
 
 		 241 aa  71.2  0.00000000004  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.214337  normal  0.533835 
 
 
-
 
NC_010676  Bphyt_5584  two component transcriptional regulator, LuxR family  29.75 
 
 		 215 aa  71.2  0.00000000004  Burkholderia phytofirmans PsJN  Bacteria  normal  0.282667  normal  1 
 
 
-
 
NC_008709  Ping_1245  two component, sigma54 specific, transcriptional regulator, Fis family protein  30.83 
 
 		 472 aa  71.2  0.00000000004  Psychromonas ingrahamii 37  Bacteria  normal  0.390474  normal  0.0307837 
 
 
-
 
NC_012034  Athe_0102  two component transcriptional regulator, AraC family  27.81 
 
 		 519 aa  70.9  0.00000000005  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
-
 
NC_007005  Psyr_0063  response regulator receiver:LytTr DNA-binding region  36.97 
 
 		 248 aa  70.9  0.00000000005  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007493  RSP_1612  sigma-54 dependent transcriptional regulator  28.4 
 
 		 439 aa  71.2  0.00000000005  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009253  Dred_3262  response regulator receiver protein  34.74 
 
 		 257 aa  71.2  0.00000000005  Desulfotomaculum reducens MI-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_012793  GWCH70_0692  transcriptional regulator, AraC family  35.56 
 
 		 287 aa  71.2  0.00000000005  Geobacillus sp. WCH70  Bacteria  normal  1  n/a   
 
 
-
 
NC_004578  PSPTO_0127  alginate biosynthesis regulatory protein AlgR  37.82 
 
 		 248 aa  70.5  0.00000000006  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_011884  Cyan7425_2941  multi-component transcriptional regulator, winged helix family  33.61 
 
 		 652 aa  70.9  0.00000000006  Cyanothece sp. PCC 7425  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007778  RPB_4035  two component LuxR family transcriptional regulator  31.03 
 
 		 228 aa  70.9  0.00000000006  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009656  PSPA7_6007  alginate biosynthesis regulatory protein AlgR  38.84 
 
 		 248 aa  70.5  0.00000000006  Pseudomonas aeruginosa PA7  Bacteria  normal  0.404994  n/a   
 
 
-
 
NC_007958  RPD_3789  response regulator receiver  32.76 
 
 		 228 aa  70.9  0.00000000006  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.0916709 
 
 
-
 
NC_013411  GYMC61_3305  two component transcriptional regulator, AraC family  37.5 
 
 		 513 aa  70.9  0.00000000006  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012918  GM21_1635  two component, sigma54 specific, transcriptional regulator, Fis family  26.49 
 
 		 457 aa  70.9  0.00000000006  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_010172  Mext_4343  response regulator receiver  31.96 
 
 		 236 aa  70.5  0.00000000007  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
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