More than 300 homologs were found in PanDaTox collection
for query gene Cphy_0864 on replicon NC_010001
Organism: Clostridium phytofermentans ISDg



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010001  Cphy_0864  two component AraC family transcriptional regulator  100 
 
 
503 aa  1031    Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1958  response regulator receiver protein  26.74 
 
 
530 aa  137  5e-31  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000471781  n/a   
 
 
-
 
NC_013411  GYMC61_3305  two component transcriptional regulator, AraC family  23.91 
 
 
513 aa  129  2.0000000000000002e-28  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012793  GWCH70_3156  two component transcriptional regulator, AraC family  24.26 
 
 
515 aa  128  3e-28  Geobacillus sp. WCH70  Bacteria  normal  0.949308  n/a   
 
 
-
 
NC_011830  Dhaf_4591  two component transcriptional regulator, AraC family  43.41 
 
 
265 aa  108  2e-22  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_2113  two component transcriptional regulator, AraC family  38.19 
 
 
538 aa  106  9e-22  Clostridium cellulolyticum H10  Bacteria  normal  0.141697  n/a   
 
 
-
 
NC_012034  Athe_0853  two component transcriptional regulator, AraC family  33.16 
 
 
509 aa  104  3e-21  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3405  two component AraC family transcriptional regulator  40.31 
 
 
253 aa  100  6e-20  Clostridium phytofermentans ISDg  Bacteria  normal  0.100445  n/a   
 
 
-
 
NC_012034  Athe_0600  two component transcriptional regulator, AraC family  38.62 
 
 
546 aa  98.2  3e-19  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_2344  AraC family DNA-binding response regulator  33 
 
 
507 aa  97.1  7e-19  Clostridium perfringens ATCC 13124  Bacteria  normal  0.627636  n/a   
 
 
-
 
NC_008262  CPR_2056  AraC family DNA-binding response regulator  33 
 
 
507 aa  95.5  2e-18  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0771  two component AraC family transcriptional regulator  38.05 
 
 
355 aa  95.1  3e-18  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000000862622  n/a   
 
 
-
 
NC_011898  Ccel_1982  two component transcriptional regulator, AraC family  38.46 
 
 
544 aa  95.1  3e-18  Clostridium cellulolyticum H10  Bacteria  normal  0.184696  n/a   
 
 
-
 
NC_010001  Cphy_3887  two component AraC family transcriptional regulator  34.88 
 
 
252 aa  91.7  3e-17  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_1645  two component transcriptional regulator, AraC family  36.57 
 
 
526 aa  91.3  3e-17  Clostridium cellulolyticum H10  Bacteria  normal  0.168722  n/a   
 
 
-
 
NC_011898  Ccel_2452  two component transcriptional regulator, AraC family  31.11 
 
 
509 aa  90.5  6e-17  Clostridium cellulolyticum H10  Bacteria  normal  0.0693402  n/a   
 
 
-
 
NC_010320  Teth514_0399  response regulator receiver protein  37.12 
 
 
365 aa  90.1  9e-17  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1722  two component AraC family transcriptional regulator  34.46 
 
 
508 aa  88.2  3e-16  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1583  two component AraC family transcriptional regulator  33.99 
 
 
533 aa  88.2  3e-16  Clostridium phytofermentans ISDg  Bacteria  normal  0.160886  n/a   
 
 
-
 
NC_012034  Athe_2550  two component transcriptional regulator, AraC family  37.72 
 
 
502 aa  87.8  4e-16  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_0224  response regulator receiver protein  40.35 
 
 
537 aa  87  8e-16  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_1138  two component transcriptional regulator, AraC family  34.13 
 
 
519 aa  86.3  0.000000000000001  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0102  two component transcriptional regulator, AraC family  38.13 
 
 
519 aa  86.3  0.000000000000001  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_2113  two component AraC family transcriptional regulator  30.97 
 
 
548 aa  85.1  0.000000000000003  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_009487  SaurJH9_0207  response regulator receiver protein  30.3 
 
 
252 aa  84  0.000000000000005  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_0213  response regulator receiver  30.3 
 
 
252 aa  84  0.000000000000005  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0944  two component transcriptional regulator, AraC family  36.36 
 
 
539 aa  84.3  0.000000000000005  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3647  two component, sigma-54 specific, Fis family transcriptional regulator  37.72 
 
 
471 aa  82.8  0.00000000000001  Geobacter uraniireducens Rf4  Bacteria  normal  0.0209004  n/a   
 
 
-
 
NC_011898  Ccel_0147  two component transcriptional regulator, AraC family  35.56 
 
 
525 aa  83.2  0.00000000000001  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_19910  response regulator receiver protein  30.39 
 
 
386 aa  82.4  0.00000000000002  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_2007  two component AraC family transcriptional regulator  33.81 
 
 
529 aa  82.4  0.00000000000002  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0618  two component AraC family transcriptional regulator  33.13 
 
 
258 aa  82.4  0.00000000000002  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.00000605397  n/a   
 
 
-
 
NC_008261  CPF_1111  AraC family transcriptional regulator  42.2 
 
 
506 aa  82.4  0.00000000000002  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.0000128485  n/a   
 
 
-
 
NC_013411  GYMC61_2718  two component transcriptional regulator, AraC family  32.17 
 
 
259 aa  82  0.00000000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009012  Cthe_2212  AraC family transcriptional regulator  33.56 
 
 
302 aa  81.6  0.00000000000003  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_2123  two component AraC family transcriptional regulator  30.59 
 
 
414 aa  81.3  0.00000000000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.331776  n/a   
 
 
-
 
NC_010814  Glov_1694  two component, sigma54 specific, transcriptional regulator, Fis family  33.86 
 
 
472 aa  81.3  0.00000000000004  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_2735  response regulator receiver  35.96 
 
 
224 aa  80.9  0.00000000000005  Pedobacter heparinus DSM 2366  Bacteria  normal  0.0572845  normal 
 
 
-
 
NC_014210  Ndas_2780  two component transcriptional regulator, LuxR family  39.05 
 
 
219 aa  80.5  0.00000000000006  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.855193  normal  0.402473 
 
 
-
 
NC_011898  Ccel_0149  two component transcriptional regulator, AraC family  32.26 
 
 
525 aa  80.5  0.00000000000006  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_1657  two component, sigma54 specific, Fis family transcriptional regulator  35 
 
 
459 aa  80.5  0.00000000000007  Desulfovibrio vulgaris DP4  Bacteria  hitchhiker  0.000574549  normal  0.302016 
 
 
-
 
NC_007298  Daro_3679  LytR/AlgR family transcriptional regulator  35.83 
 
 
262 aa  80.1  0.00000000000008  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_014150  Bmur_0291  two component, sigma54 specific, transcriptional regulator, Fis family  34.42 
 
 
444 aa  80.1  0.00000000000009  Brachyspira murdochii DSM 12563  Bacteria  hitchhiker  0.00612417  n/a   
 
 
-
 
NC_007413  Ava_3869  AraC family transcriptional regulator  36.63 
 
 
304 aa  79.3  0.0000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_0437  two component, sigma54 specific, Fis family transcriptional regulator  37.61 
 
 
490 aa  79.3  0.0000000000001  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_3282  two component AraC family transcriptional regulator  34.27 
 
 
535 aa  79.7  0.0000000000001  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_1089  helix-turn-helix domain-containing protein  33.96 
 
 
298 aa  79  0.0000000000002  Marinomonas sp. MWYL1  Bacteria  normal  0.99301  hitchhiker  0.00294409 
 
 
-
 
NC_009439  Pmen_1929  response regulator receiver protein  35.46 
 
 
394 aa  79  0.0000000000002  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.310245 
 
 
-
 
NC_011830  Dhaf_1809  transcriptional regulator, AraC family  38.46 
 
 
273 aa  78.6  0.0000000000003  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000000000729156  n/a   
 
 
-
 
NC_013173  Dbac_2828  response regulator receiver sensor signal transduction histidine kinase  37.41 
 
 
410 aa  78.6  0.0000000000003  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_4467  AraC family transcriptional regulator  36.36 
 
 
301 aa  78.2  0.0000000000003  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_013457  VEA_000974  response regulator of the LytR/AlgR family  33.86 
 
 
263 aa  77.8  0.0000000000004  Vibrio sp. Ex25  Bacteria  normal  0.728867  n/a   
 
 
-
 
NC_009784  VIBHAR_07024  transcriptional regulator  33.86 
 
 
263 aa  77.8  0.0000000000004  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011661  Dtur_0314  two component transcriptional regulator, AraC family  33.07 
 
 
494 aa  77.8  0.0000000000004  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_0843  response regulator receiver protein  37.39 
 
 
251 aa  78.2  0.0000000000004  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  hitchhiker  0.00000594696  n/a   
 
 
-
 
NC_010001  Cphy_0579  two component AraC family transcriptional regulator  32.35 
 
 
531 aa  77.4  0.0000000000005  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0876  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  34.35 
 
 
709 aa  77.8  0.0000000000005  Geobacter uraniireducens Rf4  Bacteria  normal  0.0730078  n/a   
 
 
-
 
NC_011898  Ccel_0198  two component transcriptional regulator, AraC family  30.88 
 
 
534 aa  77  0.0000000000006  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2195  multi-sensor signal transduction histidine kinase  34.13 
 
 
502 aa  77  0.0000000000006  Geobacter sp. M21  Bacteria  n/a    normal  0.067402 
 
 
-
 
NC_010001  Cphy_2141  two component AraC family transcriptional regulator  34.29 
 
 
260 aa  77  0.0000000000008  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_0227  LytR/AlgR family transcriptional regulator  35 
 
 
265 aa  76.6  0.0000000000009  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.312706  n/a   
 
 
-
 
NC_007298  Daro_0775  helix-turn-helix, Fis-type  35.71 
 
 
457 aa  76.3  0.000000000001  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.118214 
 
 
-
 
NC_013947  Snas_2469  two component transcriptional regulator, LuxR family  36.54 
 
 
214 aa  76.3  0.000000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.126163  normal 
 
 
-
 
NC_010001  Cphy_3034  two component AraC family transcriptional regulator  38.58 
 
 
556 aa  76.3  0.000000000001  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00618221  n/a   
 
 
-
 
NC_012792  Vapar_6144  transcriptional regulator, AraC family  35.35 
 
 
301 aa  76.3  0.000000000001  Variovorax paradoxus S110  Bacteria  normal  0.185797  n/a   
 
 
-
 
NC_012034  Athe_2058  transcriptional regulator, AraC family  38.24 
 
 
286 aa  76.6  0.000000000001  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0496  two component AraC family transcriptional regulator  33.33 
 
 
543 aa  76.3  0.000000000001  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_34440  transcriptional regulator MtlR  33.1 
 
 
301 aa  76.3  0.000000000001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.0000000000688741  normal  0.560291 
 
 
-
 
NC_011898  Ccel_1228  two component transcriptional regulator, AraC family  32.86 
 
 
532 aa  75.9  0.000000000001  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_1152  two component LuxR family transcriptional regulator  31.53 
 
 
225 aa  76.3  0.000000000001  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_011898  Ccel_0125  transcriptional regulator, AraC family  30.71 
 
 
300 aa  76.3  0.000000000001  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_2278  LytTr DNA-binding response regulator  34.33 
 
 
280 aa  75.9  0.000000000002  Colwellia psychrerythraea 34H  Bacteria  normal  0.421967  n/a   
 
 
-
 
NC_011146  Gbem_2024  multi-sensor signal transduction histidine kinase  32.54 
 
 
517 aa  75.5  0.000000000002  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_1845  LuxR response regulator receiver  37.14 
 
 
215 aa  75.5  0.000000000002  Thermobifida fusca YX  Bacteria  hitchhiker  0.00433344  n/a   
 
 
-
 
NC_007947  Mfla_0945  two component LuxR family transcriptional regulator  34.21 
 
 
210 aa  75.5  0.000000000002  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1089  two component LuxR family transcriptional regulator  34.21 
 
 
210 aa  75.5  0.000000000002  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_2329  LytTR family two component transcriptional regulator  36.94 
 
 
255 aa  75.5  0.000000000002  Opitutus terrae PB90-1  Bacteria  normal  0.0531557  decreased coverage  0.00207881 
 
 
-
 
NC_009621  Smed_5215  helix-turn-helix domain-containing protein  32.67 
 
 
331 aa  75.5  0.000000000002  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_1151  two component LuxR family transcriptional regulator  30.63 
 
 
225 aa  75.5  0.000000000002  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2010  two component transcriptional regulator, LuxR family  34.95 
 
 
214 aa  74.7  0.000000000003  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_2103  two component, sigma54 specific, Fis family transcriptional regulator  32.2 
 
 
467 aa  74.7  0.000000000003  Opitutus terrae PB90-1  Bacteria  normal  0.705186  normal  0.234249 
 
 
-
 
NC_011145  AnaeK_1114  two component, sigma54 specific, transcriptional regulator, Fis family  29.61 
 
 
501 aa  74.7  0.000000000003  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_1172  AraC family DNA-binding response regulator  33.62 
 
 
250 aa  75.1  0.000000000003  Clostridium perfringens ATCC 13124  Bacteria  normal  0.409048  n/a   
 
 
-
 
NC_011830  Dhaf_2917  transcriptional regulator, AraC family  34.34 
 
 
118 aa  75.1  0.000000000003  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.932782  n/a   
 
 
-
 
NC_008554  Sfum_3268  two component, sigma54 specific, Fis family transcriptional regulator  35.71 
 
 
483 aa  74.7  0.000000000003  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.474695  normal 
 
 
-
 
NC_008576  Mmc1_3443  response regulator receiver protein  34.35 
 
 
223 aa  74.7  0.000000000003  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_2926  transcriptional regulator MtlR  33.64 
 
 
287 aa  75.1  0.000000000003  Pseudomonas aeruginosa PA7  Bacteria  normal  0.795893  n/a   
 
 
-
 
NC_010001  Cphy_2253  two component AraC family transcriptional regulator  32.52 
 
 
532 aa  74.7  0.000000000004  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_1003  DNA-binding response regulator  29.79 
 
 
250 aa  74.7  0.000000000004  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_1183  two component, sigma54 specific, transcriptional regulator, Fis family  29.41 
 
 
481 aa  74.3  0.000000000005  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3572  two component, sigma-54 specific, Fis family transcriptional regulator  31.82 
 
 
457 aa  73.9  0.000000000005  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_2186  two component transcriptional regulator, LytTR family  31.4 
 
 
275 aa  73.9  0.000000000006  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_3197  DNA-binding transcriptional regulator AraC  31.37 
 
 
325 aa  73.9  0.000000000006  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0504834 
 
 
-
 
NC_009654  Mmwyl1_3450  two component, sigma54 specific, Fis family transcriptional regulator  35.83 
 
 
448 aa  73.9  0.000000000006  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_0970  two component, sigma54 specific, transcriptional regulator, Fis family  34.81 
 
 
473 aa  73.9  0.000000000006  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0157817  hitchhiker  0.00000223455 
 
 
-
 
NC_008322  Shewmr7_1222  two component LuxR family transcriptional regulator  30.63 
 
 
225 aa  73.9  0.000000000006  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A0919  two component AraC family transcriptional regulator  33.93 
 
 
356 aa  73.6  0.000000000007  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3251  two component, sigma54 specific, transcriptional regulator, Fis family  29.27 
 
 
465 aa  73.6  0.000000000007  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2924  two component, sigma54 specific, Fis family transcriptional regulator  35.45 
 
 
470 aa  73.6  0.000000000008  Geobacter metallireducens GS-15  Bacteria  normal  0.777319  hitchhiker  0.0000000000564278 
 
 
-
 
NC_009483  Gura_3104  response regulator receiver protein  30.64 
 
 
266 aa  73.6  0.000000000008  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
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