121 homologs were found in PanDaTox collection
for query gene Cag_0808 on replicon NC_007514
Organism: Chlorobium chlorochromatii CaD3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007514  Cag_0808  specificity determinant HsdS-like  100 
 
 
363 aa  749    Chlorobium chlorochromatii CaD3  Bacteria  normal  0.361917  n/a   
 
 
-
 
NC_009943  Dole_0249  restriction modification system DNA specificity subunit  35.62 
 
 
393 aa  234  2.0000000000000002e-60  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_0816  restriction modification system DNA specificity subunit  48.7 
 
 
267 aa  145  1e-33  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_0614  restriction modification system DNA specificity domain protein  37.3 
 
 
401 aa  136  7.000000000000001e-31  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_2652  Restriction endonuclease S subunits-like protein  28.95 
 
 
413 aa  130  3e-29  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.252104  n/a   
 
 
-
 
NC_011206  Lferr_0227  restriction modification system DNA specificity domain  33.68 
 
 
395 aa  130  4.0000000000000003e-29  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_013158  Huta_0102  restriction modification system DNA specificity domain protein  37.97 
 
 
442 aa  127  4.0000000000000003e-28  Halorhabdus utahensis DSM 12940  Archaea  normal  n/a   
 
 
-
 
NC_008709  Ping_0149  restriction modification system DNA specificity subunit  29.22 
 
 
400 aa  122  8e-27  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_1576  type I restriction-modification system, S subunit  32.39 
 
 
399 aa  115  1.0000000000000001e-24  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.200835  n/a   
 
 
-
 
NC_011146  Gbem_3569  restriction modification system DNA specificity domain  28.77 
 
 
395 aa  114  2.0000000000000002e-24  Geobacter bemidjiensis Bem  Bacteria  normal  0.0185936  n/a   
 
 
-
 
NC_009523  RoseRS_0735  restriction modification system DNA specificity subunit  36.16 
 
 
392 aa  108  1e-22  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.142305 
 
 
-
 
NC_009801  EcE24377A_2910  putative type I restriction-modification system, S subunit  33.73 
 
 
373 aa  107  2e-22  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1536  restriction modification system DNA specificity domain  27.8 
 
 
364 aa  107  4e-22  Anaeromyxobacter sp. K  Bacteria  normal  0.856573  n/a   
 
 
-
 
NC_013421  Pecwa_1672  restriction modification system DNA specificity domain protein  34.46 
 
 
493 aa  101  2e-20  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007955  Mbur_1218  restriction modification system DNA specificity subunit  33.73 
 
 
351 aa  98.2  2e-19  Methanococcoides burtonii DSM 6242  Archaea  normal  0.67755  n/a   
 
 
-
 
NC_009616  Tmel_0403  restriction modification system DNA specificity subunit  29.61 
 
 
402 aa  98.6  2e-19  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E4810  putative type I restriction-modification system specificity subunit  38.56 
 
 
360 aa  97.8  2e-19  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009975  MmarC6_0041  restriction modification system DNA specificity subunit  35.26 
 
 
397 aa  97.4  3e-19  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_008025  Dgeo_2016  restriction modification system DNA specificity subunit  31.58 
 
 
417 aa  95.1  1e-18  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.0839323  normal 
 
 
-
 
NC_009665  Shew185_2194  restriction modification system DNA specificity subunit  30.29 
 
 
427 aa  90.5  4e-17  Shewanella baltica OS185  Bacteria  normal  0.122675  n/a   
 
 
-
 
NC_012039  Cla_0347  type I restriction-modification system, S subunit  31.32 
 
 
390 aa  90.1  5e-17  Campylobacter lari RM2100  Bacteria  hitchhiker  0.00000269296  n/a   
 
 
-
 
NC_011884  Cyan7425_3075  restriction modification system DNA specificity domain protein  30.21 
 
 
388 aa  89.7  7e-17  Cyanothece sp. PCC 7425  Bacteria  normal  0.40504  normal 
 
 
-
 
NC_011726  PCC8801_2988  restriction modification system DNA specificity domain protein  33.56 
 
 
386 aa  87.4  4e-16  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008255  CHU_3351  type I site-specific deoxyribonuclease S subunit  29.61 
 
 
354 aa  85.5  0.000000000000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  hitchhiker  0.00146581  normal  0.0102246 
 
 
-
 
NC_013889  TK90_1635  restriction modification system DNA specificity domain protein  30.71 
 
 
419 aa  85.9  0.000000000000001  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0235263  normal 
 
 
-
 
NC_010577  XfasM23_2176  restriction modification system DNA specificity subunit  25.09 
 
 
444 aa  85.1  0.000000000000002  Xylella fastidiosa M23  Bacteria  normal  0.962317  n/a   
 
 
-
 
NC_009052  Sbal_4348  restriction modification system DNA specificity subunit  29.79 
 
 
363 aa  84.3  0.000000000000003  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009707  JJD26997_1911  hypothetical protein  28.08 
 
 
453 aa  84.3  0.000000000000003  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  0.568524  n/a   
 
 
-
 
NC_008761  Pnap_4778  restriction modification system DNA specificity subunit  30.59 
 
 
415 aa  84  0.000000000000004  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.16943  normal 
 
 
-
 
NC_008255  CHU_3352  type I site-specific deoxyribonuclease S subunit  28.89 
 
 
303 aa  83.2  0.000000000000007  Cytophaga hutchinsonii ATCC 33406  Bacteria  decreased coverage  0.0000513186  normal  0.0100815 
 
 
-
 
NC_008740  Maqu_0030  restriction modification system DNA specificity subunit  26.79 
 
 
435 aa  82.4  0.00000000000001  Marinobacter aquaeolei VT8  Bacteria  normal  0.534213  n/a   
 
 
-
 
NC_013946  Mrub_2452  restriction modification system DNA specificity domain-containing protein  31.21 
 
 
419 aa  81.6  0.00000000000002  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.587532 
 
 
-
 
NC_007969  Pcryo_0951  restriction modification system DNA specificity subunit  29.08 
 
 
419 aa  81.3  0.00000000000003  Psychrobacter cryohalolentis K5  Bacteria  normal  unclonable  0.0000406123 
 
 
-
 
NC_012917  PC1_0864  restriction modification system DNA specificity domain protein  29.65 
 
 
413 aa  80.9  0.00000000000004  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0689213  n/a   
 
 
-
 
NC_011071  Smal_1037  restriction modification system DNA specificity domain  31.87 
 
 
364 aa  79  0.0000000000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0890662  normal 
 
 
-
 
NC_011832  Mpal_1094  restriction modification system DNA specificity domain protein  30.18 
 
 
205 aa  77.8  0.0000000000003  Methanosphaerula palustris E1-9c  Archaea  normal  0.0782363  normal  0.473834 
 
 
-
 
NC_008639  Cpha266_1710  restriction modification system DNA specificity subunit  22.16 
 
 
414 aa  77.8  0.0000000000003  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3499  restriction modification system DNA specificity subunit  24.75 
 
 
405 aa  75.9  0.0000000000009  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.082109 
 
 
-
 
NC_008789  Hhal_1153  restriction modification system DNA specificity subunit  29.65 
 
 
429 aa  75.5  0.000000000001  Halorhodospira halophila SL1  Bacteria  normal  0.487263  n/a   
 
 
-
 
NC_009921  Franean1_3768  restriction modification system DNA specificity subunit  30.5 
 
 
374 aa  75.1  0.000000000002  Frankia sp. EAN1pec  Bacteria  normal  0.36553  normal 
 
 
-
 
NC_011729  PCC7424_2086  restriction modification system DNA specificity domain protein  23.53 
 
 
417 aa  74.7  0.000000000002  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.0000000683293 
 
 
-
 
NC_002977  MCA0836  type I restriction-modification system S subunit  29.24 
 
 
416 aa  73.9  0.000000000004  Methylococcus capsulatus str. Bath  Bacteria  normal  0.444813  n/a   
 
 
-
 
NC_009483  Gura_0549  restriction modification system DNA specificity subunit  31.14 
 
 
385 aa  73.9  0.000000000004  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_2415  restriction modification system DNA specificity domain  29.14 
 
 
418 aa  73.9  0.000000000004  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.589349  normal  0.260014 
 
 
-
 
NC_011761  AFE_2791  type I restriction-modification system, S subunit  29.14 
 
 
418 aa  73.9  0.000000000004  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_1544  restriction modification system DNA specificity domain protein  29.62 
 
 
374 aa  73.2  0.000000000008  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_1087  type I restriction-modification system, S subunit  26.9 
 
 
422 aa  72  0.00000000002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.247708  n/a   
 
 
-
 
NC_013411  GYMC61_1674  restriction modification system DNA specificity domain protein  24.51 
 
 
477 aa  70.5  0.00000000004  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_002967  TDE2743  type I restriction-modification system, S subunit, truncation  27.92 
 
 
175 aa  70.1  0.00000000006  Treponema denticola ATCC 35405  Bacteria  normal  0.441032  n/a   
 
 
-
 
NC_007404  Tbd_2682  putative restriction endonuclease S subunit  28.31 
 
 
400 aa  69.7  0.00000000007  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.845062  normal 
 
 
-
 
NC_008541  Arth_0987  restriction modification system DNA specificity subunit  29.59 
 
 
390 aa  69.7  0.00000000007  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2093  restriction modification system DNA specificity subunit  25.99 
 
 
477 aa  69.3  0.00000000009  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_2394  hypothetical protein  41.25 
 
 
87 aa  68.2  0.0000000002  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_0005  restriction modification system DNA specificity domain protein  29.09 
 
 
378 aa  68.6  0.0000000002  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011374  UUR10_0040  restriction-modification enzyme subunit s3a  25.49 
 
 
372 aa  67.4  0.0000000004  Ureaplasma urealyticum serovar 10 str. ATCC 33699  Bacteria  normal  0.0522579  n/a   
 
 
-
 
NC_007947  Mfla_1216  restriction modification system DNA specificity subunit  25.33 
 
 
427 aa  67  0.0000000005  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_008532  STER_0750  restriction endonuclease S subunit  28.57 
 
 
387 aa  66.2  0.0000000008  Streptococcus thermophilus LMD-9  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_1260  restriction modification system DNA specificity subunit  21.94 
 
 
385 aa  66.2  0.0000000009  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_007955  Mbur_1842  restriction modification system DNA specificity subunit  25.3 
 
 
391 aa  65.9  0.000000001  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_008312  Tery_4472  restriction modification system DNA specificity subunit  30.64 
 
 
415 aa  65.1  0.000000002  Trichodesmium erythraeum IMS101  Bacteria  normal  0.270866  normal  0.0902542 
 
 
-
 
NC_002977  MCA1890  type I restriction-modification system, S subunit  24.7 
 
 
416 aa  64.3  0.000000003  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_011668  Sbal223_4454  restriction modification system DNA specificity domain protein  25.62 
 
 
406 aa  63.9  0.000000004  Shewanella baltica OS223  Bacteria  normal  0.859615  normal 
 
 
-
 
NC_009661  Shew185_4455  restriction modification system DNA specificity subunit  25 
 
 
388 aa  62  0.00000002  Shewanella baltica OS185  Bacteria  normal  0.353509  normal 
 
 
-
 
NC_009802  CCC13826_1411  type I restriction modification DNA specificity domain-containing protein  25.48 
 
 
382 aa  59.7  0.00000008  Campylobacter concisus 13826  Bacteria  normal  0.202691  n/a   
 
 
-
 
NC_008639  Cpha266_1492  restriction modification system DNA specificity subunit  22.47 
 
 
479 aa  58.9  0.0000001  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_0333  restriction modification system DNA specificity subunit  32.14 
 
 
371 aa  58.2  0.0000002  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_6044  type I restriction-modification system subunit S  26.92 
 
 
547 aa  55.5  0.000001  Pseudomonas aeruginosa PA7  Bacteria  normal  0.061065  n/a   
 
 
-
 
NC_007204  Psyc_0878  type I restriction modification system methylase  28.74 
 
 
424 aa  54.7  0.000002  Psychrobacter arcticus 273-4  Bacteria  normal  normal  0.707045 
 
 
-
 
NC_013204  Elen_1516  restriction modification system DNA specificity subunit  24.43 
 
 
395 aa  55.1  0.000002  Eggerthella lenta DSM 2243  Bacteria  normal  normal  0.205219 
 
 
-
 
NC_009338  Mflv_0804  restriction modification system DNA specificity subunit  25 
 
 
368 aa  54.3  0.000004  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.526121  normal  0.427419 
 
 
-
 
NC_009565  TBFG_12768  type I restriction/modification system specificity determinant hsdS.1  34.57 
 
 
91 aa  54.3  0.000004  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_009513  Lreu_1435  restriction modification system DNA specificity subunit  24.45 
 
 
340 aa  52.8  0.000009  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_1500  restriction modification system DNA specificity domain protein  26.67 
 
 
398 aa  51.6  0.00002  Jonesia denitrificans DSM 20603  Bacteria  normal  0.100633  normal 
 
 
-
 
NC_008312  Tery_2421  restriction modification system DNA specificity subunit  24.13 
 
 
402 aa  51.6  0.00002  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.318068 
 
 
-
 
NC_008345  Sfri_1954  restriction modification system DNA specificity subunit  24.64 
 
 
406 aa  51.6  0.00002  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008942  Mlab_0842  hypothetical protein  23 
 
 
446 aa  51.2  0.00002  Methanocorpusculum labreanum Z  Archaea  normal  0.229597  normal 
 
 
-
 
NC_010831  Cphamn1_0334  restriction modification system DNA specificity domain  21.69 
 
 
430 aa  52  0.00002  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal  0.284396 
 
 
-
 
NC_011729  PCC7424_4139  restriction modification system DNA specificity domain protein  25.42 
 
 
238 aa  50.8  0.00003  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013502  Rmar_2893  restriction modification system DNA specificity domain protein  20.43 
 
 
237 aa  50.8  0.00004  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_0277  restriction modification system DNA specificity subunit  21.79 
 
 
413 aa  48.9  0.0001  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2726  restriction modification system DNA specificity subunit  26.24 
 
 
500 aa  48.9  0.0001  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_2960  restriction modification system DNA specificity subunit  25.81 
 
 
587 aa  48.5  0.0002  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_014150  Bmur_1564  restriction modification system DNA specificity domain protein  26.3 
 
 
1134 aa  48.5  0.0002  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_02063  type I restriction-modification system, S subunit  21.39 
 
 
501 aa  48.5  0.0002  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_1204  restriction modification system DNA specificity subunit  30.72 
 
 
547 aa  47.8  0.0003  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.340549  n/a   
 
 
-
 
NC_009783  VIBHAR_01116  hypothetical protein  28.88 
 
 
400 aa  47.4  0.0004  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008740  Maqu_0414  restriction modification system DNA specificity subunit  24.12 
 
 
439 aa  47  0.0005  Marinobacter aquaeolei VT8  Bacteria  normal  0.405933  n/a   
 
 
-
 
NC_009665  Shew185_1978  restriction modification system DNA specificity subunit  30.37 
 
 
616 aa  47  0.0005  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C4930  type I restriction enzyme StySJI specificity protein  23.38 
 
 
469 aa  47  0.0005  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_3940  restriction modification system DNA specificity domain protein  23.99 
 
 
453 aa  47  0.0005  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008787  CJJ81176_1536  hypothetical protein  25.67 
 
 
380 aa  46.2  0.0008  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  hitchhiker  0.00344436  n/a   
 
 
-
 
NC_010655  Amuc_1914  restriction modification system DNA specificity domain  24.71 
 
 
386 aa  46.6  0.0008  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  hitchhiker  0.00381757 
 
 
-
 
NC_011761  AFE_2378  type I restriction-modification system, S subunit  23.28 
 
 
383 aa  46.2  0.0008  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3199  restriction modification system DNA specificity subunit  25.14 
 
 
400 aa  46.2  0.0009  Marinomonas sp. MWYL1  Bacteria  normal  0.365834  normal 
 
 
-
 
NC_003912  CJE1195  type II restriction-modification enzyme  27.81 
 
 
1343 aa  46.2  0.001  Campylobacter jejuni RM1221  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_0959  restriction modification system DNA specificity domain protein  21.28 
 
 
442 aa  45.8  0.001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0854  restriction modification system DNA specificity subunit  28.99 
 
 
595 aa  46.2  0.001  Desulfovibrio vulgaris DP4  Bacteria  normal  0.221182  normal  0.0643125 
 
 
-
 
NC_012912  Dd1591_3673  restriction modification system DNA specificity domain protein  36.36 
 
 
459 aa  45.8  0.001  Dickeya zeae Ech1591  Bacteria  normal  0.372341  n/a   
 
 
-
 
NC_009565  TBFG_12774  type I restriction/modification system specificity determinant hsdS  28.21 
 
 
364 aa  45.8  0.001  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_1414  restriction modification system DNA specificity domain  20.74 
 
 
447 aa  45.4  0.001  Geobacter lovleyi SZ  Bacteria  decreased coverage  0.00014984  n/a   
 
 
-
 
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