More than 300 homologs were found in PanDaTox collection
for query gene Cag_0107 on replicon NC_007514
Organism: Chlorobium chlorochromatii CaD3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007514  Cag_0107  carbamoyl phosphate synthase small subunit  100 
 
 
367 aa  760    Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_0218  carbamoyl phosphate synthase small subunit  75.27 
 
 
367 aa  593  1e-168  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010803  Clim_2299  carbamoyl phosphate synthase small subunit  73.57 
 
 
369 aa  581  1.0000000000000001e-165  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.0000401664  n/a   
 
 
-
 
NC_008639  Cpha266_2459  carbamoyl phosphate synthase small subunit  72.48 
 
 
369 aa  579  1e-164  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.420642  n/a   
 
 
-
 
NC_007512  Plut_0156  carbamoyl phosphate synthase small subunit  72.21 
 
 
369 aa  571  1.0000000000000001e-162  Chlorobium luteolum DSM 273  Bacteria  normal  0.983052  normal  0.416855 
 
 
-
 
NC_011059  Paes_2113  carbamoyl phosphate synthase small subunit  67.57 
 
 
371 aa  543  1e-153  Prosthecochloris aestuarii DSM 271  Bacteria  unclonable  0.000000000982338  normal  0.988223 
 
 
-
 
NC_010831  Cphamn1_2349  carbamoyl phosphate synthase small subunit  69.59 
 
 
366 aa  538  9.999999999999999e-153  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_1613  carbamoyl phosphate synthase small subunit  53.19 
 
 
376 aa  398  9.999999999999999e-111  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0266912  n/a   
 
 
-
 
NC_007644  Moth_0881  carbamoyl-phosphate synthase small subunit  53.87 
 
 
361 aa  397  1e-109  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_1683  carbamoyl-phosphate synthase, small subunit  52.35 
 
 
359 aa  394  1e-109  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.0000104913  n/a   
 
 
-
 
NC_014148  Plim_2032  carbamoyl-phosphate synthase, small subunit  54.28 
 
 
383 aa  396  1e-109  Planctomyces limnophilus DSM 3776  Bacteria  unclonable  0.000000277554  n/a   
 
 
-
 
NC_008009  Acid345_2194  carbamoyl-phosphate synthase small subunit  52.96 
 
 
373 aa  388  1e-107  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_010730  SYO3AOP1_1361  carbamoyl phosphate synthase small subunit  49.73 
 
 
376 aa  385  1e-106  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1771  carbamoyl phosphate synthase small subunit  52.13 
 
 
374 aa  386  1e-106  Geobacter metallireducens GS-15  Bacteria  normal  0.0224697  normal  0.089739 
 
 
-
 
NC_011831  Cagg_2643  carbamoyl-phosphate synthase, small subunit  52.67 
 
 
374 aa  385  1e-106  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_2729  carbamoyl-phosphate synthase small subunit  49.46 
 
 
387 aa  386  1e-106  Saccharophagus degradans 2-40  Bacteria  normal  0.422158  normal 
 
 
-
 
NC_010655  Amuc_1250  carbamoyl-phosphate synthase, small subunit  50.81 
 
 
372 aa  387  1e-106  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU1273  carbamoyl phosphate synthase small subunit  51.6 
 
 
374 aa  384  1e-105  Geobacter sulfurreducens PCA  Bacteria  normal  0.0567002  n/a   
 
 
-
 
NC_009523  RoseRS_4055  carbamoyl-phosphate synthase, small subunit  52.24 
 
 
386 aa  382  1e-105  Roseiflexus sp. RS-1  Bacteria  normal  0.103191  normal 
 
 
-
 
NC_008228  Patl_2215  carbamoyl-phosphate synthase, small subunit  50.92 
 
 
381 aa  383  1e-105  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.000311671  n/a   
 
 
-
 
NC_008781  Pnap_1774  carbamoyl phosphate synthase small subunit  49.87 
 
 
393 aa  382  1e-105  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.0283036 
 
 
-
 
NC_008554  Sfum_0009  carbamoyl phosphate synthase small subunit  52.28 
 
 
391 aa  384  1e-105  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.35972  normal 
 
 
-
 
NC_008576  Mmc1_3019  carbamoyl-phosphate synthase small subunit  50.8 
 
 
377 aa  382  1e-105  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_1858  carbamoyl phosphate synthase small subunit  51.6 
 
 
373 aa  381  1e-105  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1898  carbamoyl phosphate synthase small subunit  50.8 
 
 
374 aa  379  1e-104  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2310  carbamoyl phosphate synthase small subunit  50.8 
 
 
374 aa  379  1e-104  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009767  Rcas_3359  carbamoyl-phosphate synthase, small subunit  52.11 
 
 
386 aa  379  1e-104  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.663891  normal 
 
 
-
 
NC_013216  Dtox_2353  carbamoyl-phosphate synthase, small subunit  51.79 
 
 
358 aa  379  1e-104  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.00528586  normal 
 
 
-
 
NC_011830  Dhaf_3203  carbamoyl-phosphate synthase, small subunit  53.13 
 
 
368 aa  376  1e-103  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_2191  carbamoyl phosphate synthase small subunit  50.53 
 
 
372 aa  375  1e-103  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.352304 
 
 
-
 
NC_011071  Smal_1811  carbamoyl phosphate synthase small subunit  50 
 
 
393 aa  372  1e-102  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.0542874 
 
 
-
 
NC_012917  PC1_3648  carbamoyl phosphate synthase small subunit  50.4 
 
 
382 aa  374  1e-102  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.48497  n/a   
 
 
-
 
NC_013385  Adeg_0372  carbamoyl-phosphate synthase, small subunit  50 
 
 
359 aa  373  1e-102  Ammonifex degensii KC4  Bacteria  normal  0.386907  n/a   
 
 
-
 
NC_008609  Ppro_2527  carbamoyl phosphate synthase small subunit  51.32 
 
 
373 aa  374  1e-102  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_1456  carbamoyl-phosphate synthase, small subunit  48.68 
 
 
390 aa  369  1e-101  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_02244  carbamoyl-phosphate synthase small subunit  48.82 
 
 
440 aa  371  1e-101  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0231375  n/a   
 
 
-
 
NC_009436  Ent638_0591  carbamoyl phosphate synthase small subunit  48.94 
 
 
382 aa  369  1e-101  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_4035  carbamoyl phosphate synthase small subunit  49.46 
 
 
396 aa  369  1e-101  Marinomonas sp. MWYL1  Bacteria  normal  0.311643  normal 
 
 
-
 
NC_007604  Synpcc7942_2122  carbamoyl phosphate synthase small subunit  51.48 
 
 
391 aa  371  1e-101  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.618886 
 
 
-
 
NC_008782  Ajs_2392  carbamoyl-phosphate synthase small subunit  48.68 
 
 
390 aa  369  1e-101  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_0698  carbamoyl-phosphate synthase, small subunit  48.26 
 
 
377 aa  370  1e-101  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.110228 
 
 
-
 
NC_010117  COXBURSA331_A1431  carbamoyl phosphate synthase small subunit  48.4 
 
 
382 aa  368  1e-101  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1968  carbamoyl phosphate synthase small subunit  49.34 
 
 
379 aa  369  1e-101  Vibrio cholerae O395  Bacteria  normal  0.837999  n/a   
 
 
-
 
NC_013501  Rmar_2002  carbamoyl-phosphate synthase, small subunit  50 
 
 
379 aa  369  1e-101  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_3841  carbamoyl phosphate synthase small subunit  50.93 
 
 
382 aa  369  1e-101  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1303  carbamoyl-phosphate synthase, small subunit  51.52 
 
 
359 aa  367  1e-100  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0780078  n/a   
 
 
-
 
NC_011145  AnaeK_2240  carbamoyl phosphate synthase small subunit  49.87 
 
 
373 aa  365  1e-100  Anaeromyxobacter sp. K  Bacteria  normal  0.513182  n/a   
 
 
-
 
NC_003910  CPS_3459  carbamoyl phosphate synthase small subunit  48.28 
 
 
383 aa  367  1e-100  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_1019  carbamoyl-phosphate synthase, small subunit  48.44 
 
 
397 aa  365  1e-100  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_00912  carbamoyl phosphate synthase small subunit  48.95 
 
 
416 aa  367  1e-100  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007492  Pfl01_0766  carbamoyl phosphate synthase small subunit  48.81 
 
 
386 aa  365  1e-100  Pseudomonas fluorescens Pf0-1  Bacteria  decreased coverage  0.00373051  normal  0.380766 
 
 
-
 
NC_010501  PputW619_0708  carbamoyl phosphate synthase small subunit  49.34 
 
 
386 aa  365  1e-100  Pseudomonas putida W619  Bacteria  normal  0.44923  normal  0.0111499 
 
 
-
 
NC_011891  A2cp1_2328  carbamoyl phosphate synthase small subunit  49.87 
 
 
373 aa  365  1e-100  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_0778  carbamoyl-phosphate synthase small subunit  48.15 
 
 
376 aa  367  1e-100  Methylobacillus flagellatus KT  Bacteria  normal  0.42563  hitchhiker  0.000147727 
 
 
-
 
NC_009943  Dole_0120  carbamoyl-phosphate synthase, small subunit  49.35 
 
 
380 aa  367  1e-100  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2083  carbamoyl phosphate synthase small subunit  50.93 
 
 
373 aa  365  1e-100  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009727  CBUD_1371  carbamoyl phosphate synthase small subunit  48.4 
 
 
402 aa  367  1e-100  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1982  carbamoyl-phosphate synthase small subunit  49.34 
 
 
386 aa  367  1e-100  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.157941  normal  0.0125598 
 
 
-
 
NC_008463  PA14_62930  carbamoyl phosphate synthase small subunit  50 
 
 
378 aa  367  1e-100  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2839  carbamoyl phosphate synthase small subunit  49.6 
 
 
390 aa  366  1e-100  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00340084  normal  0.0286195 
 
 
-
 
NC_013456  VEA_004479  carbamoyl-phosphate synthase small chain  49.34 
 
 
379 aa  365  1e-100  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2504  carbamoyl phosphate synthase small subunit  49.73 
 
 
381 aa  365  1e-100  Shewanella amazonensis SB2B  Bacteria  normal  0.323519  normal 
 
 
-
 
NC_007298  Daro_0938  carbamoyl-phosphate synthase small subunit  47.86 
 
 
385 aa  364  1e-99  Dechloromonas aromatica RCB  Bacteria  normal  0.742428  normal 
 
 
-
 
NC_011083  SeHA_C0070  carbamoyl phosphate synthase small subunit  47.62 
 
 
391 aa  364  1e-99  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_2679  carbamoyl phosphate synthase small subunit  47.18 
 
 
401 aa  364  1e-99  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A0072  carbamoyl phosphate synthase small subunit  47.62 
 
 
382 aa  364  1e-99  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.399436  normal  0.955538 
 
 
-
 
NC_002947  PP_4724  carbamoyl phosphate synthase small subunit  48.81 
 
 
378 aa  364  2e-99  Pseudomonas putida KT2440  Bacteria  normal  0.103863  hitchhiker  0.00276318 
 
 
-
 
NC_009439  Pmen_3621  carbamoyl phosphate synthase small subunit  49.87 
 
 
382 aa  363  2e-99  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_4590  carbamoyl phosphate synthase small subunit  48.81 
 
 
386 aa  363  2e-99  Pseudomonas putida F1  Bacteria  normal  normal  0.740896 
 
 
-
 
NC_010322  PputGB1_4725  carbamoyl phosphate synthase small subunit  48.81 
 
 
378 aa  363  2e-99  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_4932  carbamoyl-phosphate synthase, small subunit  48.68 
 
 
388 aa  363  3e-99  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.259128 
 
 
-
 
NC_007520  Tcr_0878  carbamoyl-phosphate synthase, small subunit  50.27 
 
 
378 aa  363  3e-99  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I0585  carbamoyl phosphate synthase small subunit  48.69 
 
 
384 aa  363  3e-99  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.0152244  n/a   
 
 
-
 
NC_011080  SNSL254_A0070  carbamoyl phosphate synthase small subunit  47.62 
 
 
382 aa  363  3e-99  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_0896  carbamoyl-phosphate synthase, small subunit  48.54 
 
 
378 aa  363  3e-99  Psychromonas ingrahamii 37  Bacteria  normal  0.348294  normal  0.560722 
 
 
-
 
NC_011206  Lferr_0790  carbamoyl-phosphate synthase, small subunit  47.47 
 
 
380 aa  362  4e-99  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_42940  carbamoyl phosphate synthase small subunit  49.6 
 
 
378 aa  362  4e-99  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_0640  carbamoyl-phosphate synthase, small subunit  47.47 
 
 
380 aa  362  4e-99  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_00088  carbamoyl phosphate synthase small subunit  48.92 
 
 
390 aa  362  4e-99  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.562291  n/a   
 
 
-
 
CP001509  ECD_00036  carbamoyl-phosphate synthase small subunit  47.88 
 
 
382 aa  362  5.0000000000000005e-99  Escherichia coli BL21(DE3)  Bacteria  normal  0.53844  n/a   
 
 
-
 
CP001637  EcDH1_3567  carbamoyl-phosphate synthase, small subunit  47.88 
 
 
382 aa  362  5.0000000000000005e-99  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_00035  hypothetical protein  47.88 
 
 
382 aa  362  5.0000000000000005e-99  Escherichia coli BL21  Bacteria  normal  0.457385  n/a   
 
 
-
 
NC_007434  BURPS1710b_1608  carbamoyl phosphate synthase small subunit  49.6 
 
 
381 aa  362  5.0000000000000005e-99  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A0035  carbamoyl phosphate synthase small subunit  47.88 
 
 
382 aa  362  5.0000000000000005e-99  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_0035  carbamoyl phosphate synthase small subunit  47.88 
 
 
382 aa  362  5.0000000000000005e-99  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E0036  carbamoyl phosphate synthase small subunit  47.88 
 
 
382 aa  362  5.0000000000000005e-99  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010531  Pnec_0848  carbamoyl-phosphate synthase, small subunit  48.18 
 
 
398 aa  362  5.0000000000000005e-99  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.287672 
 
 
-
 
NC_009801  EcE24377A_0033  carbamoyl phosphate synthase small subunit  47.88 
 
 
382 aa  362  5.0000000000000005e-99  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_0032  carbamoyl phosphate synthase small subunit  47.88 
 
 
391 aa  362  6e-99  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A0074  carbamoyl phosphate synthase small subunit  47.62 
 
 
382 aa  362  6e-99  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_010468  EcolC_3623  carbamoyl phosphate synthase small subunit  47.88 
 
 
382 aa  362  6e-99  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.314254 
 
 
-
 
NC_008345  Sfri_0975  carbamoyl phosphate synthase small subunit  49.2 
 
 
381 aa  362  6e-99  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.00141878  n/a   
 
 
-
 
NC_007760  Adeh_1620  carbamoyl phosphate synthase small subunit  49.6 
 
 
373 aa  362  7.0000000000000005e-99  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.394714  n/a   
 
 
-
 
NC_010524  Lcho_2823  carbamoyl-phosphate synthase, small subunit  48.44 
 
 
394 aa  362  8e-99  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009656  PSPA7_5478  carbamoyl phosphate synthase small subunit  49.47 
 
 
378 aa  361  9e-99  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_1127  carbamoyl-phosphate synthase small subunit  51.88 
 
 
379 aa  361  1e-98  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.390679  normal 
 
 
-
 
NC_011149  SeAg_B0073  carbamoyl phosphate synthase small subunit  47.35 
 
 
382 aa  361  1e-98  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_1505  carbamoyl phosphate synthase small subunit  49.33 
 
 
381 aa  361  1e-98  Burkholderia pseudomallei 1106a  Bacteria  normal  0.188244  n/a   
 
 
-
 
NC_007954  Sden_0995  carbamoyl phosphate synthase small subunit  48.94 
 
 
381 aa  361  1e-98  Shewanella denitrificans OS217  Bacteria  normal  0.055995  n/a   
 
 
-
 
NC_008752  Aave_2610  carbamoyl-phosphate synthase, small subunit  47.37 
 
 
392 aa  360  1e-98  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.752092 
 
 
-
 
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