More than 300 homologs were found in PanDaTox collection
for query gene CPS_1619 on replicon NC_003910
Organism: Colwellia psychrerythraea 34H



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_003910  CPS_1619  DNA-binding response regulator  100 
 
 
185 aa  375  1e-103  Colwellia psychrerythraea 34H  Bacteria  normal  0.208637  n/a   
 
 
-
 
NC_003910  CPS_4926  merR family DNA-binding response regulator  41.67 
 
 
192 aa  175  3e-43  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1938  excisionase family DNA-binding response regulator  34.68 
 
 
190 aa  119  3e-26  Colwellia psychrerythraea 34H  Bacteria  normal  0.440271  n/a   
 
 
-
 
NC_014148  Plim_2544  DNA binding domain protein, excisionase family  30.9 
 
 
264 aa  97.4  9e-20  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.0361834  n/a   
 
 
-
 
NC_007348  Reut_B5042  excisionase/Xis, DNA-binding  30.11 
 
 
198 aa  89.7  2e-17  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_2180  response regulator receiver  32.2 
 
 
151 aa  81.6  0.000000000000006  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.269305  n/a   
 
 
-
 
NC_009675  Anae109_2620  two component, sigma54 specific, Fis family transcriptional regulator  31.25 
 
 
532 aa  81.6  0.000000000000006  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.0658498  normal 
 
 
-
 
NC_011369  Rleg2_3066  two component transcriptional regulator, LuxR family  34.23 
 
 
305 aa  81.3  0.000000000000008  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_3499  transcriptional regulator LuxR family  36.04 
 
 
312 aa  81.3  0.000000000000009  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_3141  PAS/PAC sensor hybrid histidine kinase  32.46 
 
 
1406 aa  80.1  0.00000000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  0.367834  normal  0.195519 
 
 
-
 
NC_011726  PCC8801_1475  response regulator receiver modulated GAF sensor protein  33.9 
 
 
311 aa  79.7  0.00000000000002  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1502  response regulator receiver modulated GAF sensor protein  33.9 
 
 
311 aa  79.7  0.00000000000002  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4179  response regulator receiver protein  33.33 
 
 
309 aa  79  0.00000000000003  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.15819 
 
 
-
 
NC_012918  GM21_2710  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  36.36 
 
 
704 aa  79  0.00000000000004  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00325078 
 
 
-
 
NC_012850  Rleg_3321  two component transcriptional regulator, LuxR family  31.53 
 
 
305 aa  78.6  0.00000000000005  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.536368 
 
 
-
 
NC_011138  MADE_03429  two-component system response regulator (hybrid family) protein  36.36 
 
 
358 aa  78.6  0.00000000000005  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0591  two component LuxR family transcriptional regulator  37.14 
 
 
301 aa  78.6  0.00000000000005  Methylobacterium sp. 4-46  Bacteria  normal  0.477799  hitchhiker  0.00469436 
 
 
-
 
NC_009654  Mmwyl1_2382  response regulator receiver modulated metal dependent phosphohydrolase  34.82 
 
 
359 aa  78.2  0.00000000000007  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_1506  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  36.36 
 
 
704 aa  78.2  0.00000000000007  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007955  Mbur_0825  response regulator receiver  33.05 
 
 
204 aa  77.8  0.00000000000009  Methanococcoides burtonii DSM 6242  Archaea  normal  0.751719  n/a   
 
 
-
 
NC_009012  Cthe_1826  response regulator receiver sensor signal transduction histidine kinase  33.61 
 
 
363 aa  77.4  0.0000000000001  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_010512  Bcenmc03_6029  PAS/PAC sensor hybrid histidine kinase  32.73 
 
 
529 aa  77  0.0000000000001  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.17892 
 
 
-
 
NC_008009  Acid345_0504  response regulator receiver modulated metal dependent phosphohydrolase  30.26 
 
 
427 aa  77.4  0.0000000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_007796  Mhun_2749  response regulator receiver domain-containing protein  35.58 
 
 
436 aa  76.3  0.0000000000002  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_008782  Ajs_1044  response regulator receiver modulated metal dependent phosphohydrolase  32.8 
 
 
377 aa  76.3  0.0000000000002  Acidovorax sp. JS42  Bacteria  normal  normal  0.0516082 
 
 
-
 
NC_007955  Mbur_0878  response regulator receiver  34.13 
 
 
302 aa  76.6  0.0000000000002  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_013522  Taci_0843  response regulator receiver protein  31.03 
 
 
251 aa  76.6  0.0000000000002  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  hitchhiker  0.00000594696  n/a   
 
 
-
 
NC_002939  GSU1037  sensory box/response regulator  29.3 
 
 
799 aa  76.3  0.0000000000003  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_1874  response regulator receiver protein  23.83 
 
 
212 aa  76.3  0.0000000000003  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_1720  two component LuxR family transcriptional regulator  34.58 
 
 
301 aa  75.9  0.0000000000003  Opitutus terrae PB90-1  Bacteria  normal  0.162572  normal  0.616267 
 
 
-
 
NC_011884  Cyan7425_3211  histidine kinase  35.59 
 
 
781 aa  75.9  0.0000000000003  Cyanothece sp. PCC 7425  Bacteria  normal  0.306218  normal  0.65795 
 
 
-
 
NC_010718  Nther_0251  response regulator receiver protein  31.36 
 
 
126 aa  75.9  0.0000000000003  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.102048 
 
 
-
 
NC_007778  RPB_1250  two component LuxR family transcriptional regulator  31.82 
 
 
309 aa  75.9  0.0000000000003  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.886948  normal 
 
 
-
 
NC_010623  Bphy_5184  multi-sensor hybrid histidine kinase  32.5 
 
 
939 aa  75.9  0.0000000000003  Burkholderia phymatum STM815  Bacteria  normal  0.584953  normal  0.0776559 
 
 
-
 
NC_007912  Sde_2977  response regulator receiver domain-containing protein  30.71 
 
 
303 aa  75.5  0.0000000000004  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.13601 
 
 
-
 
NC_008060  Bcen_1391  multi-sensor hybrid histidine kinase  30.91 
 
 
526 aa  75.5  0.0000000000004  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.444347  n/a   
 
 
-
 
NC_008700  Sama_0437  response regulator receiver protein  31.67 
 
 
237 aa  75.1  0.0000000000005  Shewanella amazonensis SB2B  Bacteria  normal  0.576272  normal 
 
 
-
 
NC_010172  Mext_3383  response regulator receiver  37.14 
 
 
300 aa  74.7  0.0000000000006  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3692  two component transcriptional regulator, LuxR family  37.14 
 
 
300 aa  75.1  0.0000000000006  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.170876  normal 
 
 
-
 
NC_011884  Cyan7425_2205  multi-sensor hybrid histidine kinase  32.2 
 
 
887 aa  75.1  0.0000000000006  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.188088 
 
 
-
 
NC_007958  RPD_3866  response regulator receiver  31.82 
 
 
309 aa  74.7  0.0000000000006  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.370865  normal 
 
 
-
 
NC_007413  Ava_1030  response regulator receiver modulated diguanylate cyclase  34.04 
 
 
330 aa  74.7  0.0000000000007  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.33399 
 
 
-
 
NC_008544  Bcen2424_6439  PAS/PAC sensor hybrid histidine kinase  30.91 
 
 
776 aa  74.7  0.0000000000007  Burkholderia cenocepacia HI2424  Bacteria  normal  0.249109  normal 
 
 
-
 
NC_009654  Mmwyl1_0962  response regulator receiver protein  30.36 
 
 
304 aa  74.7  0.0000000000007  Marinomonas sp. MWYL1  Bacteria  normal  0.512477  normal 
 
 
-
 
NC_007947  Mfla_0667  GAF sensor hybrid histidine kinase  31.9 
 
 
703 aa  74.3  0.0000000000009  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_002967  TDE0855  DNA-binding response regulator  24.87 
 
 
189 aa  74.3  0.000000000001  Treponema denticola ATCC 35405  Bacteria  normal  0.0365807  n/a   
 
 
-
 
NC_013037  Dfer_0536  histidine kinase  30.77 
 
 
1324 aa  73.6  0.000000000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.0692259  normal  0.421547 
 
 
-
 
NC_013440  Hoch_2174  PAS/PAC sensor hybrid histidine kinase  34.91 
 
 
633 aa  74.3  0.000000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  0.634157  normal  0.649523 
 
 
-
 
NC_011729  PCC7424_2841  response regulator receiver modulated GAF sensor protein  28.24 
 
 
308 aa  73.9  0.000000000001  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.585847 
 
 
-
 
NC_011992  Dtpsy_0962  response regulator receiver modulated metal dependent phosphohydrolase  32 
 
 
377 aa  73.6  0.000000000001  Acidovorax ebreus TPSY  Bacteria  normal  0.115091  n/a   
 
 
-
 
NC_002936  DET0304  response regulator  35.85 
 
 
223 aa  73.6  0.000000000002  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_4732  response regulator receiver protein  30 
 
 
123 aa  73.6  0.000000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.539442  n/a   
 
 
-
 
NC_009665  Shew185_0836  response regulator receiver modulated metal dependent phosphohydrolase  31.93 
 
 
338 aa  73.6  0.000000000002  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_1169  response regulator receiver modulated diguanylate cyclase  30.51 
 
 
308 aa  73.2  0.000000000002  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_00878  two-component response regulator  43.21 
 
 
298 aa  73.6  0.000000000002  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1040  PAS/PAC sensor hybrid histidine kinase  31.25 
 
 
664 aa  73.2  0.000000000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1761  two component LuxR family transcriptional regulator  32.74 
 
 
311 aa  73.2  0.000000000002  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3504  response regulator receiver modulated metal dependent phosphohydrolase  31.93 
 
 
338 aa  73.2  0.000000000002  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4715  multi-sensor hybrid histidine kinase  30.77 
 
 
1350 aa  72.8  0.000000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.726459  n/a   
 
 
-
 
NC_011726  PCC8801_1139  response regulator receiver modulated diguanylate cyclase  30.51 
 
 
308 aa  73.2  0.000000000002  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011663  Sbal223_0859  response regulator receiver modulated metal dependent phosphohydrolase  31.93 
 
 
338 aa  73.2  0.000000000002  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_0871  response regulator receiver modulated metal dependent phosphohydrolase  31.93 
 
 
338 aa  73.6  0.000000000002  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_3794  response regulator receiver sensor signal transduction histidine kinase  33.33 
 
 
376 aa  72.4  0.000000000003  Opitutus terrae PB90-1  Bacteria  normal  0.0277983  normal  0.543799 
 
 
-
 
NC_007519  Dde_1942  metal dependent phosphohydrolase  30.17 
 
 
363 aa  72.8  0.000000000003  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.284574  n/a   
 
 
-
 
NC_009972  Haur_0604  response regulator receiver protein  29.17 
 
 
123 aa  72.8  0.000000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.72319  n/a   
 
 
-
 
NC_007955  Mbur_1899  multisensor signal transduction histidine kinase  32.2 
 
 
462 aa  72.8  0.000000000003  Methanococcoides burtonii DSM 6242  Archaea  normal  0.970297  n/a   
 
 
-
 
NC_009485  BBta_0652  two component LuxR family transcriptional regulator  33.33 
 
 
305 aa  72.4  0.000000000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0800453  normal  0.813173 
 
 
-
 
NC_011004  Rpal_1441  two component transcriptional regulator, LuxR family  32.73 
 
 
308 aa  72.8  0.000000000003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_1277  response regulator receiver modulated diguanylate cyclase  32.38 
 
 
454 aa  72.4  0.000000000003  Maricaulis maris MCS10  Bacteria  normal  0.410696  normal  0.0388481 
 
 
-
 
NC_009654  Mmwyl1_3382  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  31.93 
 
 
594 aa  72.8  0.000000000003  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.371129 
 
 
-
 
NC_010172  Mext_0967  diguanylate cyclase  32.2 
 
 
457 aa  72.4  0.000000000004  Methylobacterium extorquens PA1  Bacteria  normal  0.555277  normal  0.0207283 
 
 
-
 
NC_009091  P9301_01471  two-component response regulator  27.73 
 
 
260 aa  72  0.000000000004  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  0.37604  n/a   
 
 
-
 
NC_010725  Mpop_3574  two component transcriptional regulator, LuxR family  36.04 
 
 
301 aa  72  0.000000000004  Methylobacterium populi BJ001  Bacteria  normal  0.0249095  normal 
 
 
-
 
NC_011757  Mchl_0931  response regulator receiver modulated diguanylate cyclase  32.2 
 
 
457 aa  72.4  0.000000000004  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.436852  normal  0.104843 
 
 
-
 
NC_007517  Gmet_2789  response regulator receiver domain-containing protein  29.91 
 
 
122 aa  72.4  0.000000000004  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4464  response regulator receiver domain-containing protein  30.83 
 
 
250 aa  72  0.000000000004  Polaromonas sp. JS666  Bacteria  normal  normal  0.579086 
 
 
-
 
NC_009092  Shew_2206  two component transcriptional regulator  29.13 
 
 
246 aa  72.4  0.000000000004  Shewanella loihica PV-4  Bacteria  normal  normal  0.121597 
 
 
-
 
NC_008816  A9601_01451  two-component response regulator  27.73 
 
 
260 aa  72  0.000000000004  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.480778  n/a   
 
 
-
 
NC_009483  Gura_3147  response regulator receiver protein  33.33 
 
 
121 aa  72  0.000000000004  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0609  DNA-binding response regulator  33.33 
 
 
231 aa  72.4  0.000000000004  Clostridium perfringens SM101  Bacteria  hitchhiker  0.0000282114  n/a   
 
 
-
 
NC_010814  Glov_2124  response regulator receiver protein  35.25 
 
 
122 aa  72  0.000000000005  Geobacter lovleyi SZ  Bacteria  normal  0.453448  n/a   
 
 
-
 
NC_002978  WD0221  response regulator PleD  34.19 
 
 
460 aa  72  0.000000000005  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_0907  response regulator receiver modulated diguanylate cyclase  32.2 
 
 
457 aa  72  0.000000000005  Methylobacterium populi BJ001  Bacteria  normal  0.401363  normal  0.40647 
 
 
-
 
NC_011884  Cyan7425_1392  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  32.43 
 
 
584 aa  72  0.000000000005  Cyanothece sp. PCC 7425  Bacteria  normal  0.623748  normal 
 
 
-
 
NC_007577  PMT9312_0130  two component transcriptional regulator  27.73 
 
 
260 aa  72  0.000000000005  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  0.907894  n/a   
 
 
-
 
NC_010505  Mrad2831_2672  multi-sensor hybrid histidine kinase  32.37 
 
 
991 aa  72  0.000000000005  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.646953  normal 
 
 
-
 
NC_010087  Bmul_5434  PAS/PAC sensor hybrid histidine kinase  30.91 
 
 
539 aa  71.6  0.000000000005  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.489177  normal  0.0484799 
 
 
-
 
NC_008576  Mmc1_2956  response regulator receiver protein  28.57 
 
 
365 aa  72  0.000000000005  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_4530  response regulator receiver sensor signal transduction histidine kinase  32.71 
 
 
386 aa  71.6  0.000000000006  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_6547  multi-sensor hybrid histidine kinase  33.93 
 
 
865 aa  71.6  0.000000000006  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.325935 
 
 
-
 
NC_010505  Mrad2831_5514  two component LuxR family transcriptional regulator  33.33 
 
 
305 aa  71.6  0.000000000006  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.211273 
 
 
-
 
NC_007413  Ava_2149  response regulator receiver Signal transduction histidine kinase  32.41 
 
 
407 aa  71.6  0.000000000006  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.142048 
 
 
-
 
NC_013456  VEA_002587  chitin catabolic cascade sensor histidine kinase ChiS  29.66 
 
 
1111 aa  71.6  0.000000000006  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007796  Mhun_0986  response regulator receiver sensor signal transduction histidine kinase  28.83 
 
 
433 aa  71.6  0.000000000006  Methanospirillum hungatei JF-1  Archaea  normal  0.0645349  normal  0.624976 
 
 
-
 
NC_011831  Cagg_3142  multi-sensor hybrid histidine kinase  29.66 
 
 
1352 aa  71.6  0.000000000006  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_008261  CPF_0623  DNA-binding response regulator  33.33 
 
 
231 aa  71.6  0.000000000006  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000212568  n/a   
 
 
-
 
NC_010524  Lcho_1463  response regulator receiver modulated metal dependent phosphohydrolase  30.25 
 
 
364 aa  71.6  0.000000000006  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.404054 
 
 
-
 
NC_013947  Snas_2095  two component transcriptional regulator, winged helix family  34.02 
 
 
256 aa  71.6  0.000000000006  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_1236  response regulator receiver sensor signal transduction histidine kinase  32.71 
 
 
386 aa  71.2  0.000000000007  Burkholderia ambifaria MC40-6  Bacteria  normal  0.493129  normal 
 
 
-
 
NC_008312  Tery_4000  response regulator receiver protein  29.66 
 
 
125 aa  71.2  0.000000000007  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.508878 
 
 
-
 
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