More than 300 homologs were found in PanDaTox collection
for query gene CPS_1599 on replicon NC_003910
Organism: Colwellia psychrerythraea 34H



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_003910  CPS_1599  hydroxymethylglutaryl-CoA lyase  100 
 
 
308 aa  631  1e-180  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_3654  hydroxymethylglutaryl-CoA lyase  65.66 
 
 
299 aa  419  1e-116  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.0630119 
 
 
-
 
NC_009439  Pmen_2029  hydroxymethylglutaryl-CoA lyase  65.32 
 
 
299 aa  415  9.999999999999999e-116  Pseudomonas mendocina ymp  Bacteria  decreased coverage  0.0062803  normal  0.740342 
 
 
-
 
NC_008228  Patl_2929  pyruvate carboxyltransferase  66.78 
 
 
305 aa  412  1e-114  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.0756431  n/a   
 
 
-
 
NC_004578  PSPTO_2742  hydroxymethylglutaryl-CoA lyase  63.51 
 
 
299 aa  406  1.0000000000000001e-112  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2471  hydroxymethylglutaryl-CoA lyase  62.16 
 
 
299 aa  407  1.0000000000000001e-112  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.100008 
 
 
-
 
NC_010506  Swoo_3227  pyruvate carboxyltransferase  66.44 
 
 
296 aa  404  1.0000000000000001e-112  Shewanella woodyi ATCC 51908  Bacteria  normal  0.461669  normal  0.0268749 
 
 
-
 
NC_009831  Ssed_1454  pyruvate carboxyltransferase  65.87 
 
 
296 aa  405  1.0000000000000001e-112  Shewanella sediminis HAW-EB3  Bacteria  normal  0.119329  normal 
 
 
-
 
NC_008345  Sfri_2731  pyruvate carboxyltransferase  66.21 
 
 
296 aa  406  1.0000000000000001e-112  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1943  hydroxymethylglutaryl-CoA lyase  62.63 
 
 
299 aa  404  1.0000000000000001e-112  Pseudomonas putida W619  Bacteria  normal  0.483934  hitchhiker  0.000417953 
 
 
-
 
NC_010322  PputGB1_2384  hydroxymethylglutaryl-CoA lyase  61.95 
 
 
299 aa  401  1e-111  Pseudomonas putida GB-1  Bacteria  normal  normal  0.953332 
 
 
-
 
NC_009512  Pput_2234  hydroxymethylglutaryl-CoA lyase  61.95 
 
 
299 aa  397  9.999999999999999e-111  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_2802  pyruvate carboxyltransferase  64.65 
 
 
301 aa  398  9.999999999999999e-111  Shewanella pealeana ATCC 700345  Bacteria  normal  0.906951  n/a   
 
 
-
 
NC_002947  PP_3540  hydroxymethylglutaryl-CoA lyase  61.95 
 
 
299 aa  395  1e-109  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_2832  pyruvate carboxyltransferase  64.41 
 
 
307 aa  395  1e-109  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_3278  hydroxymethylglutaryl-CoA lyase  61.94 
 
 
300 aa  395  1e-109  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_2326  hydroxymethylglutaryl-CoA lyase  63.85 
 
 
315 aa  395  1e-109  Shewanella sp. MR-4  Bacteria  normal  normal  0.43357 
 
 
-
 
NC_008322  Shewmr7_2398  hydroxymethylglutaryl-CoA lyase  63.85 
 
 
315 aa  394  1e-109  Shewanella sp. MR-7  Bacteria  normal  normal  0.515821 
 
 
-
 
NC_009665  Shew185_2850  pyruvate carboxyltransferase  64.41 
 
 
307 aa  394  1e-109  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_49510  hydroxymethylglutaryl-CoA lyase  60.75 
 
 
300 aa  393  1e-108  Azotobacter vinelandii DJ  Bacteria  hitchhiker  0.00876047  n/a   
 
 
-
 
NC_004347  SO_1893  hydroxymethylglutaryl-CoA lyase  63.73 
 
 
315 aa  391  1e-108  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009092  Shew_2574  pyruvate carboxyltransferase  62.16 
 
 
301 aa  393  1e-108  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_1526  pyruvate carboxyltransferase  64.07 
 
 
307 aa  392  1e-108  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_2977  pyruvate carboxyltransferase  64.07 
 
 
307 aa  393  1e-108  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_1715  pyruvate carboxyltransferase  64.16 
 
 
315 aa  391  1e-108  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_38490  hydroxymethylglutaryl-CoA lyase  62.28 
 
 
300 aa  394  1e-108  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_1358  pyruvate carboxyltransferase  62.46 
 
 
296 aa  392  1e-108  Shewanella amazonensis SB2B  Bacteria  normal  0.849399  normal  0.697753 
 
 
-
 
NC_013457  VEA_001540  hydroxymethylglutaryl-CoA lyase  61.09 
 
 
302 aa  389  1e-107  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_2250  hydroxymethylglutaryl-CoA lyase  63.14 
 
 
295 aa  390  1e-107  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_05477  hydroxymethylglutaryl-CoA lyase  61.43 
 
 
298 aa  389  1e-107  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011138  MADE_02416  hydroxymethylglutaryl-CoA lyase  60.61 
 
 
298 aa  390  1e-107  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_1668  hydroxymethylglutaryl-CoA lyase  63.18 
 
 
310 aa  390  1e-107  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_2126  pyruvate carboxyltransferase  61.9 
 
 
299 aa  390  1e-107  Marinobacter aquaeolei VT8  Bacteria  normal  0.129667  n/a   
 
 
-
 
NC_007298  Daro_0086  hydroxymethylglutaryl-CoA lyase  61.77 
 
 
301 aa  381  1e-105  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_013457  VEA_000381  hydroxymethylglutaryl-CoA lyase  61.02 
 
 
309 aa  378  1e-104  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_0753  pyruvate carboxyltransferase  57.7 
 
 
311 aa  379  1e-104  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009727  CBUD_1542  hydroxymethylglutaryl-CoA lyase  59.73 
 
 
299 aa  377  1e-103  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  0.131196  n/a   
 
 
-
 
NC_010117  COXBURSA331_A0633  hydroxymethylglutaryl-CoA lyase  59.39 
 
 
299 aa  373  1e-102  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_1854  pyruvate carboxyltransferase  57.09 
 
 
301 aa  369  1e-101  Xanthobacter autotrophicus Py2  Bacteria  normal  0.41694  normal 
 
 
-
 
NC_007434  BURPS1710b_0543  hydroxymethylglutaryl-CoA lyase  54.49 
 
 
311 aa  355  3.9999999999999996e-97  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0367  hydroxymethylglutaryl-CoA lyase  54.49 
 
 
311 aa  355  3.9999999999999996e-97  Burkholderia pseudomallei 1106a  Bacteria  normal  0.128401  n/a   
 
 
-
 
NC_009074  BURPS668_0353  hydroxymethylglutaryl-CoA lyase  54.49 
 
 
311 aa  355  3.9999999999999996e-97  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A4270  hydroxymethylglutaryl-CoA lyase  54.85 
 
 
309 aa  354  8.999999999999999e-97  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.0533201 
 
 
-
 
NC_010681  Bphyt_0440  hydroxymethylglutaryl-CoA lyase  54.52 
 
 
308 aa  353  1e-96  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_0165  hydroxymethylglutaryl-CoA lyase  55.12 
 
 
308 aa  353  2e-96  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4155  hydroxymethylglutaryl-CoA lyase  56.33 
 
 
306 aa  353  2e-96  Polaromonas sp. JS666  Bacteria  normal  normal  0.951896 
 
 
-
 
NC_010524  Lcho_2115  pyruvate carboxyltransferase  54.33 
 
 
306 aa  353  2e-96  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.348555 
 
 
-
 
NC_008752  Aave_4349  hydroxymethylglutaryl-CoA lyase  55.56 
 
 
303 aa  353  2.9999999999999997e-96  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_0477  pyruvate carboxyltransferase  55.12 
 
 
308 aa  352  5e-96  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I0313  hydroxymethylglutaryl-CoA lyase  53.82 
 
 
310 aa  350  1e-95  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_3038  pyruvate carboxyltransferase  54.13 
 
 
304 aa  350  2e-95  Acidovorax ebreus TPSY  Bacteria  normal  0.928882  n/a   
 
 
-
 
NC_010002  Daci_5964  pyruvate carboxyltransferase  54.97 
 
 
313 aa  348  5e-95  Delftia acidovorans SPH-1  Bacteria  normal  0.0367175  normal 
 
 
-
 
NC_008782  Ajs_3757  hydroxymethylglutaryl-CoA lyase  53.8 
 
 
304 aa  348  6e-95  Acidovorax sp. JS42  Bacteria  normal  0.0122709  normal 
 
 
-
 
NC_011680  PHATRDRAFT_13643  hydroxymethylglutaryl-coenzyme A lyase  54.37 
 
 
321 aa  348  7e-95  Phaeodactylum tricornutum CCAP 1055/1  Eukaryota  normal  0.404031  n/a   
 
 
-
 
NC_007347  Reut_A0153  hydroxymethylglutaryl-CoA lyase  54.36 
 
 
311 aa  348  8e-95  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_2870  hydroxymethylglutaryl-CoA lyase  54.52 
 
 
310 aa  348  9e-95  Burkholderia ambifaria MC40-6  Bacteria  normal  0.534298  normal  0.868536 
 
 
-
 
NC_010084  Bmul_2955  hydroxymethylglutaryl-CoA lyase  54.52 
 
 
310 aa  347  1e-94  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_3007  hydroxymethylglutaryl-CoA lyase  54.18 
 
 
310 aa  347  1e-94  Burkholderia ambifaria AMMD  Bacteria  normal  0.868623  n/a   
 
 
-
 
NC_012791  Vapar_4710  pyruvate carboxyltransferase  55.37 
 
 
306 aa  347  1e-94  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_0607  hydroxymethylglutaryl-CoA lyase  53.87 
 
 
310 aa  347  2e-94  Cupriavidus metallidurans CH34  Bacteria  normal  0.314247  normal  0.692973 
 
 
-
 
NC_007517  Gmet_3293  hydroxymethylglutaryl-CoA lyase  60.41 
 
 
309 aa  345  4e-94  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2345  hydroxymethylglutaryl-CoA lyase  53.85 
 
 
310 aa  345  4e-94  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.511724  n/a   
 
 
-
 
NC_009485  BBta_4049  hydroxymethylglutaryl-CoA lyase  54.85 
 
 
303 aa  345  4e-94  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0594588  normal  0.373552 
 
 
-
 
NC_008542  Bcen2424_2959  hydroxymethylglutaryl-CoA lyase  53.85 
 
 
310 aa  345  4e-94  Burkholderia cenocepacia HI2424  Bacteria  normal  0.504237  n/a   
 
 
-
 
NC_010508  Bcenmc03_2980  hydroxymethylglutaryl-CoA lyase  54.24 
 
 
310 aa  343  2e-93  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_006368  lpp1793  hypothetical protein  54.58 
 
 
302 aa  342  2.9999999999999997e-93  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_007510  Bcep18194_A6309  hydroxymethylglutaryl-CoA lyase  54.24 
 
 
310 aa  343  2.9999999999999997e-93  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_0121  hydroxymethylglutaryl-CoA lyase  53.74 
 
 
309 aa  343  2.9999999999999997e-93  Ralstonia pickettii 12D  Bacteria  normal  normal  0.649671 
 
 
-
 
NC_003295  RSc0261  hydroxymethylglutaryl-CoA lyase  55.59 
 
 
309 aa  342  4e-93  Ralstonia solanacearum GMI1000  Bacteria  normal  0.39725  normal 
 
 
-
 
NC_011981  Avi_7692  hydroxymethylglutaryl-CoA lyase  53.67 
 
 
307 aa  342  5e-93  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A3354  hydroxymethylglutaryl-CoA lyase  52.96 
 
 
307 aa  342  5.999999999999999e-93  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_0114  hydroxymethylglutaryl-CoA lyase  53.22 
 
 
309 aa  341  9e-93  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_0514  pyruvate carboxyltransferase  54.9 
 
 
303 aa  341  1e-92  Verminephrobacter eiseniae EF01-2  Bacteria  decreased coverage  0.00792422  normal 
 
 
-
 
NC_006369  lpl1794  hypothetical protein  54.24 
 
 
302 aa  340  1e-92  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007778  RPB_2932  pyruvate carboxyltransferase  54.18 
 
 
301 aa  339  2.9999999999999998e-92  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.991309 
 
 
-
 
NC_011071  Smal_1800  pyruvate carboxyltransferase  54.11 
 
 
298 aa  338  5.9999999999999996e-92  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.0874728 
 
 
-
 
NC_007925  RPC_2780  pyruvate carboxyltransferase  53.18 
 
 
301 aa  338  8e-92  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.262601  normal  0.241199 
 
 
-
 
NC_007908  Rfer_3824  pyruvate carboxyltransferase  53.56 
 
 
302 aa  337  9.999999999999999e-92  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_1888  pyruvate carboxyltransferase  50.5 
 
 
306 aa  336  2.9999999999999997e-91  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_2536  pyruvate carboxyltransferase  52.17 
 
 
306 aa  336  2.9999999999999997e-91  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A1462  hydroxymethylglutaryl-CoA lyase  55.25 
 
 
317 aa  335  5.999999999999999e-91  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1940  hydroxymethylglutaryl-CoA lyase  57.69 
 
 
304 aa  335  7.999999999999999e-91  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.307176  n/a   
 
 
-
 
NC_009512  Pput_3074  pyruvate carboxyltransferase  53.16 
 
 
306 aa  334  1e-90  Pseudomonas putida F1  Bacteria  normal  0.0190421  normal 
 
 
-
 
NC_007969  Pcryo_0343  pyruvate carboxyltransferase  54.43 
 
 
306 aa  332  7.000000000000001e-90  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_009524  PsycPRwf_2063  pyruvate carboxyltransferase  54.52 
 
 
304 aa  331  1e-89  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_1838  hydroxymethylglutaryl-CoA lyase  53.79 
 
 
299 aa  329  3e-89  Geobacillus sp. WCH70  Bacteria  normal  0.611608  n/a   
 
 
-
 
NC_010717  PXO_00102  hydroxymethylglutaryl-CoA lyase  55.14 
 
 
298 aa  330  3e-89  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.135051  n/a   
 
 
-
 
NC_007204  Psyc_0312  hydroxymethylglutaryl-CoA lyase  53.77 
 
 
306 aa  329  4e-89  Psychrobacter arcticus 273-4  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_2810  pyruvate carboxyltransferase  50.5 
 
 
301 aa  327  1.0000000000000001e-88  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.631686  n/a   
 
 
-
 
NC_008044  TM1040_0739  hydroxymethylglutaryl-CoA lyase  57.66 
 
 
288 aa  326  2.0000000000000001e-88  Ruegeria sp. TM1040  Bacteria  normal  0.5891  normal  0.963586 
 
 
-
 
NC_013411  GYMC61_2443  hydroxymethylglutaryl-CoA lyase  52.8 
 
 
297 aa  324  1e-87  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009620  Smed_4536  hydroxymethylglutaryl-CoA lyase  54.55 
 
 
289 aa  313  1.9999999999999998e-84  Sinorhizobium medicae WSM419  Bacteria  normal  0.696155  normal 
 
 
-
 
NC_009952  Dshi_1303  hydroxymethylglutaryl-CoA lyase  56.93 
 
 
287 aa  308  8e-83  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.15453  normal  0.0935443 
 
 
-
 
NC_014165  Tbis_2152  pyruvate carboxyltransferase  47.97 
 
 
298 aa  307  1.0000000000000001e-82  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0040  hydroxymethylglutaryl-CoA lyase  50.9 
 
 
287 aa  305  6e-82  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.723185  n/a   
 
 
-
 
NC_013440  Hoch_3592  pyruvate carboxyltransferase  46.2 
 
 
314 aa  302  4.0000000000000003e-81  Haliangium ochraceum DSM 14365  Bacteria  normal  0.255257  hitchhiker  0.00183471 
 
 
-
 
NC_010184  BcerKBAB4_2358  hydroxymethylglutaryl-CoA lyase  50.88 
 
 
303 aa  301  8.000000000000001e-81  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B2809  hydroxymethylglutaryl-CoA lyase  51.24 
 
 
303 aa  300  1e-80  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.000154528 
 
 
-
 
NC_005945  BAS2372  hydroxymethylglutaryl-CoA lyase  50.88 
 
 
303 aa  300  3e-80  Bacillus anthracis str. Sterne  Bacteria  normal  0.13104  n/a   
 
 
-
 
NC_011773  BCAH820_2563  hydroxymethylglutaryl-CoA lyase  50.88 
 
 
303 aa  300  3e-80  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  7.5413e-18 
 
 
-
 
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