9 homologs were found in PanDaTox collection
for query gene CPR_A0004 on replicon NC_008263
Organism: Clostridium perfringens SM101



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008263  CPR_A0004  uviA protein  100 
 
 
188 aa  365  1e-100  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_008264  CPR_B0003  bacteriocin uviA  36.51 
 
 
190 aa  101  7e-21  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_011126  HY04AAS1_0928  putative RNA polymerase, sigma 70 family subunit  41.38 
 
 
311 aa  47.8  0.0001  Hydrogenobaculum sp. Y04AAS1  Bacteria  hitchhiker  0.0000000210299  n/a   
 
 
-
 
NC_013385  Adeg_1552  RNA polymerase, sigma 28 subunit, SigG  29.31 
 
 
256 aa  42.7  0.003  Ammonifex degensii KC4  Bacteria  hitchhiker  0.0000000178805  n/a   
 
 
-
 
NC_011830  Dhaf_3442  RNA polymerase, sigma 28 subunit, SigF  33.33 
 
 
261 aa  42.4  0.004  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_2131  ECF subfamily RNA polymerase sigma-24 factor  34.55 
 
 
166 aa  42  0.005  Salinispora arenicola CNS-205  Bacteria  normal  0.633257  normal  0.118205 
 
 
-
 
NC_010424  Daud_1425  sporulation sigma factor SigG  29.31 
 
 
255 aa  42  0.005  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.00153435  n/a   
 
 
-
 
NC_011898  Ccel_2734  RNA polymerase, sigma-24 subunit, ECF subfamily  32.31 
 
 
130 aa  42  0.005  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0064  RNA polymerase, sigma 32 subunit, RpoH  33.82 
 
 
285 aa  41.2  0.01  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.534501  n/a   
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>