23 homologs were found in PanDaTox collection
for query gene CHU_0046 on replicon NC_008255
Organism: Cytophaga hutchinsonii ATCC 33406



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008255  CHU_0046  regulatory protein; transcriptional regulator  100 
 
 
74 aa  153  1e-36  Cytophaga hutchinsonii ATCC 33406  Bacteria  hitchhiker  0.000000520081  hitchhiker  0.00206151 
 
 
-
 
NC_008255  CHU_0271  hypothetical protein  45.95 
 
 
74 aa  75.5  0.0000000000003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2987  hypothetical protein  57.89 
 
 
91 aa  50.4  0.000008  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.36915 
 
 
-
 
NC_008687  Pden_4415  XRE family transcriptional regulator  37.7 
 
 
213 aa  47.4  0.00008  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_0284  XRE family transcriptional regulator  38.33 
 
 
101 aa  46.2  0.0001  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.214235  normal 
 
 
-
 
NC_008043  TM1040_3261  XRE family transcriptional regulator  40 
 
 
190 aa  45.1  0.0003  Ruegeria sp. TM1040  Bacteria  normal  0.957848  normal  0.179215 
 
 
-
 
NC_012912  Dd1591_1500  transcriptional regulator, XRE family  37.5 
 
 
81 aa  44.7  0.0004  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET1555  DNA-binding protein  32.26 
 
 
72 aa  43.5  0.0009  Dehalococcoides ethenogenes 195  Bacteria  decreased coverage  0.00000236293  n/a   
 
 
-
 
NC_012793  GWCH70_1649  transcriptional regulator, XRE family  28.79 
 
 
108 aa  43.5  0.0009  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.00000000457933  n/a   
 
 
-
 
NC_009674  Bcer98_0751  helix-turn-helix domain-containing protein  33.33 
 
 
69 aa  43.1  0.001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0802  transcriptional regulator, XRE family  40 
 
 
106 aa  42.7  0.002  Geobacter sp. M21  Bacteria  n/a    normal  0.237035 
 
 
-
 
NC_007953  Bxe_C0924  anaerobic benzoate catabolism transcriptional regulator  32.81 
 
 
323 aa  41.6  0.003  Burkholderia xenovorans LB400  Bacteria  normal  0.325541  normal  0.296459 
 
 
-
 
NC_008044  TM1040_1345  XRE family transcriptional regulator  35.21 
 
 
209 aa  42  0.003  Ruegeria sp. TM1040  Bacteria  normal  0.200207  normal 
 
 
-
 
NC_009441  Fjoh_2677  helix-turn-helix domain-containing protein  37.5 
 
 
87 aa  42  0.003  Flavobacterium johnsoniae UW101  Bacteria  normal  0.561977  n/a   
 
 
-
 
NC_013552  DhcVS_67  hypothetical protein  30.16 
 
 
72 aa  41.6  0.004  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2711  XRE family transcriptional regulator  35.29 
 
 
112 aa  41.2  0.004  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.256888  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0814  XRE family transcriptional regulator  31.88 
 
 
112 aa  41.2  0.005  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_2435  transcriptional regulator, XRE family  33.87 
 
 
105 aa  41.2  0.005  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_1907  XRE family transcriptional regulator  37.7 
 
 
107 aa  41.2  0.005  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_2655  XRE family transcriptional regulator  27.42 
 
 
80 aa  40.4  0.008  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013204  Elen_1921  transcriptional regulator, XRE family  31.25 
 
 
78 aa  40.4  0.008  Eggerthella lenta DSM 2243  Bacteria  normal  0.339052  normal  0.010603 
 
 
-
 
NC_009455  DehaBAV1_0299  XRE family transcriptional regulator  30.65 
 
 
71 aa  40.4  0.009  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.00000289962  n/a   
 
 
-
 
NC_009455  DehaBAV1_0101  XRE family transcriptional regulator  30.65 
 
 
71 aa  40.4  0.009  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.000000391644  n/a   
 
 
-
 
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