More than 300 homologs were found in PanDaTox collection
for query gene Bphy_0042 on replicon NC_010622
Organism: Burkholderia phymatum STM815



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010622  Bphy_0042  two component Fis family transcriptional regulator  100 
 
 
229 aa  462  1e-129  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_0316  two component transcriptional regulator, Fis family  89.52 
 
 
229 aa  382  1e-105  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A4409  two component Fis family transcriptional regulator  90.83 
 
 
229 aa  375  1e-103  Burkholderia xenovorans LB400  Bacteria  normal  0.352798  normal 
 
 
-
 
NC_010508  Bcenmc03_3136  two component Fis family transcriptional regulator  79.57 
 
 
233 aa  346  1e-94  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.230449  normal  0.232677 
 
 
-
 
NC_007651  BTH_I0135  DNA-binding response regulator  82.1 
 
 
228 aa  345  3e-94  Burkholderia thailandensis E264  Bacteria  normal  0.719023  n/a   
 
 
-
 
NC_010551  BamMC406_3058  two component Fis family transcriptional regulator  80.09 
 
 
233 aa  342  2e-93  Burkholderia ambifaria MC40-6  Bacteria  normal  0.151149  normal 
 
 
-
 
NC_008390  Bamb_3175  response regulator receiver protein  80.09 
 
 
233 aa  342  2e-93  Burkholderia ambifaria AMMD  Bacteria  normal  0.320814  n/a   
 
 
-
 
NC_010084  Bmul_3117  two component Fis family transcriptional regulator  80.43 
 
 
233 aa  336  1.9999999999999998e-91  Burkholderia multivorans ATCC 17616  Bacteria  decreased coverage  0.00594667  normal 
 
 
-
 
NC_007510  Bcep18194_A6471  two component Fis family transcriptional regulator  80 
 
 
233 aa  335  3.9999999999999995e-91  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2506  response regulator receiver protein  80 
 
 
233 aa  335  5e-91  Burkholderia cenocepacia AU 1054  Bacteria  decreased coverage  0.000665817  n/a   
 
 
-
 
NC_010682  Rpic_3671  two component transcriptional regulator, Fis family  73.14 
 
 
236 aa  334  5.999999999999999e-91  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_008836  BMA10229_A2282  DNA-binding response regulator  79.48 
 
 
227 aa  332  4e-90  Burkholderia mallei NCTC 10229  Bacteria  normal  0.0153588  n/a   
 
 
-
 
NC_006348  BMA0149  DNA-binding response regulator  79.48 
 
 
227 aa  332  4e-90  Burkholderia mallei ATCC 23344  Bacteria  normal  0.0760476  n/a   
 
 
-
 
NC_007434  BURPS1710b_0353  DNA-binding response regulator  79.48 
 
 
227 aa  332  4e-90  Burkholderia pseudomallei 1710b  Bacteria  normal  0.450752  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2798  DNA-binding response regulator  79.48 
 
 
227 aa  332  4e-90  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0168  Fis family DNA-binding response regulator  79.48 
 
 
227 aa  332  4e-90  Burkholderia pseudomallei 1106a  Bacteria  normal  0.75283  n/a   
 
 
-
 
NC_009080  BMA10247_2360  DNA-binding response regulator  79.48 
 
 
227 aa  332  4e-90  Burkholderia mallei NCTC 10247  Bacteria  normal  0.405701  n/a   
 
 
-
 
NC_009074  BURPS668_0158  Fis family DNA-binding response regulator  79.48 
 
 
227 aa  332  4e-90  Burkholderia pseudomallei 668  Bacteria  normal  0.135474  n/a   
 
 
-
 
NC_012856  Rpic12D_3348  two component transcriptional regulator, Fis family  71.49 
 
 
237 aa  329  2e-89  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A3402  helix-turn-helix, Fis-type  75.43 
 
 
236 aa  328  3e-89  Ralstonia eutropha JMP134  Bacteria  normal  0.0473986  n/a   
 
 
-
 
NC_007973  Rmet_3559  response regulator receiver domain-containing protein  73.93 
 
 
238 aa  327  1.0000000000000001e-88  Cupriavidus metallidurans CH34  Bacteria  normal  0.0874597  normal 
 
 
-
 
NC_003295  RSc0078  two component response regulator transcription regulator protein  71.72 
 
 
239 aa  324  6e-88  Ralstonia solanacearum GMI1000  Bacteria  decreased coverage  0.00000511995  normal 
 
 
-
 
NC_008542  Bcen2424_3120  response regulator receiver protein  79.09 
 
 
223 aa  316  2e-85  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0108559  n/a   
 
 
-
 
NC_008786  Veis_2269  two component Fis family transcriptional regulator  68.42 
 
 
224 aa  298  6e-80  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.606138  normal  0.860572 
 
 
-
 
NC_008825  Mpe_A0275  putative two component response regulator transcription regulator protein  66.38 
 
 
229 aa  297  8e-80  Methylibium petroleiphilum PM1  Bacteria  normal  0.625871  normal  0.0173821 
 
 
-
 
NC_010524  Lcho_4000  two component Fis family transcriptional regulator  66.53 
 
 
240 aa  297  1e-79  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000000203773 
 
 
-
 
NC_008782  Ajs_3891  two component Fis family transcriptional regulator  67.53 
 
 
232 aa  293  2e-78  Acidovorax sp. JS42  Bacteria  normal  normal  0.569436 
 
 
-
 
NC_011992  Dtpsy_3240  two component transcriptional regulator, Fis family  67.53 
 
 
232 aa  293  2e-78  Acidovorax ebreus TPSY  Bacteria  normal  0.450687  n/a   
 
 
-
 
NC_010002  Daci_0516  two component Fis family transcriptional regulator  66.52 
 
 
223 aa  287  1e-76  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.0663038 
 
 
-
 
NC_008781  Pnap_3629  two component Fis family transcriptional regulator  68.28 
 
 
224 aa  287  1e-76  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.334527 
 
 
-
 
NC_007908  Rfer_3587  response regulator receiver domain-containing protein  69.6 
 
 
225 aa  284  8e-76  Rhodoferax ferrireducens T118  Bacteria  normal  0.157723  n/a   
 
 
-
 
NC_007948  Bpro_4433  two component Fis family transcriptional regulator  65.81 
 
 
225 aa  275  4e-73  Polaromonas sp. JS666  Bacteria  normal  0.337273  normal 
 
 
-
 
NC_010531  Pnec_1772  two component transcriptional regulator, Fis family  60.26 
 
 
227 aa  275  6e-73  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.979845 
 
 
-
 
NC_009379  Pnuc_2074  two component Fis family transcriptional regulator  59.83 
 
 
227 aa  271  7e-72  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_0594  response regulator receiver protein  66.95 
 
 
233 aa  271  9e-72  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_4525  two component Fis family transcriptional regulator  65.11 
 
 
238 aa  270  1e-71  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_0181  two component, sigma54 specific, Fis family transcriptional regulator  71.31 
 
 
423 aa  183  2.0000000000000003e-45  Methylobacillus flagellatus KT  Bacteria  normal  decreased coverage  0.000041492 
 
 
-
 
NC_007614  Nmul_A0389  two component, sigma54 specific, Fis family transcriptional regulator  69.11 
 
 
432 aa  179  4e-44  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0031  helix-turn-helix, Fis-type  72.88 
 
 
421 aa  177  1e-43  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.992354 
 
 
-
 
NC_011662  Tmz1t_4083  two component, sigma54 specific, transcriptional regulator, Fis family  67.13 
 
 
415 aa  176  3e-43  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_0019  two component Fis family transcriptional regulator  71.31 
 
 
424 aa  169  2e-41  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.217538 
 
 
-
 
NC_008340  Mlg_2623  two component, sigma54 specific, Fis family transcriptional regulator  54.89 
 
 
456 aa  148  7e-35  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_013422  Hneap_2080  two component, sigma54 specific, transcriptional regulator, Fis family  57.63 
 
 
461 aa  142  3e-33  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA2848  nitrogen regulation protein NtrX, putative  58.62 
 
 
455 aa  140  9.999999999999999e-33  Methylococcus capsulatus str. Bath  Bacteria  normal  0.754871  n/a   
 
 
-
 
NC_011901  Tgr7_0200  two component, sigma54 specific, transcriptional regulator, Fis family  59.13 
 
 
458 aa  139  4.999999999999999e-32  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.162426  n/a   
 
 
-
 
NC_007484  Noc_3019  two component, sigma-54 specific, Fis family transcriptional regulator  49.24 
 
 
455 aa  134  9.999999999999999e-31  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_0188  two component, sigma54 specific, Fis family transcriptional regulator  56.03 
 
 
452 aa  129  3e-29  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_2268  two component, sigma54 specific, transcriptional regulator, Fis family  50.43 
 
 
459 aa  126  2.0000000000000002e-28  Thioalkalivibrio sp. K90mix  Bacteria  normal  hitchhiker  0.00701331 
 
 
-
 
NC_011206  Lferr_0025  two component, sigma54 specific, transcriptional regulator, Fis family  56.03 
 
 
468 aa  120  1.9999999999999998e-26  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.0807039 
 
 
-
 
NC_011761  AFE_0024  nitrogen assimilation regulatory protein NtrX, putative  56.03 
 
 
468 aa  120  1.9999999999999998e-26  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0811  nitrogen regulation protein NtrX  53.33 
 
 
456 aa  113  2.0000000000000002e-24  Geobacter sulfurreducens PCA  Bacteria  normal  0.686874  n/a   
 
 
-
 
NC_007517  Gmet_0776  two component, sigma54 specific, Fis family transcriptional regulator  51.26 
 
 
454 aa  112  5e-24  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_1797  two component, sigma54 specific, transcriptional regulator, Fis family  52.07 
 
 
461 aa  111  9e-24  Rhodothermus marinus DSM 4252  Bacteria  normal  0.774224  n/a   
 
 
-
 
NC_007498  Pcar_2345  two component signal transduction response regulator  42.28 
 
 
455 aa  109  3e-23  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00459366  n/a   
 
 
-
 
NC_009943  Dole_2739  two component, sigma54 specific, Fis family transcriptional regulator  45.76 
 
 
451 aa  109  4.0000000000000004e-23  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.693002  n/a   
 
 
-
 
NC_011146  Gbem_3286  two component, sigma54 specific, transcriptional regulator, Fis family  50.43 
 
 
458 aa  109  4.0000000000000004e-23  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0962  two component, sigma54 specific, transcriptional regulator, Fis family  50.43 
 
 
458 aa  109  5e-23  Geobacter sp. M21  Bacteria  n/a    normal  0.277353 
 
 
-
 
NC_008554  Sfum_1934  two component, sigma54 specific, Fis family transcriptional regulator  46.09 
 
 
476 aa  108  7.000000000000001e-23  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.808753  normal  0.132653 
 
 
-
 
NC_010814  Glov_1377  two component, sigma54 specific, transcriptional regulator, Fis family  52.17 
 
 
462 aa  107  2e-22  Geobacter lovleyi SZ  Bacteria  normal  0.244526  n/a   
 
 
-
 
NC_008009  Acid345_1394  two component, sigma54 specific, Fis family transcriptional regulator  47.9 
 
 
450 aa  105  4e-22  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.205793  normal  0.0550645 
 
 
-
 
NC_011769  DvMF_1461  two component, sigma54 specific, transcriptional regulator, Fis family  48.33 
 
 
491 aa  105  5e-22  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.750458 
 
 
-
 
NC_008609  Ppro_0710  two component, sigma54 specific, Fis family transcriptional regulator  50.85 
 
 
456 aa  105  8e-22  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_0931  response regulator receiver protein  45.61 
 
 
430 aa  104  1e-21  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3335  two component, sigma-54 specific, Fis family transcriptional regulator  49.59 
 
 
458 aa  103  2e-21  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0199  two component, sigma54 specific, transcriptional regulator, Fis family  43.1 
 
 
451 aa  102  3e-21  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.940712  n/a   
 
 
-
 
NC_011666  Msil_0531  two component, sigma54 specific, transcriptional regulator, Fis family  47.01 
 
 
455 aa  101  8e-21  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007519  Dde_3003  two component Fis family transcriptional regulator  44.44 
 
 
465 aa  100  1e-20  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.0697126  n/a   
 
 
-
 
NC_010511  M446_5941  two component, sigma54 specific, Fis family transcriptional regulator  38.67 
 
 
456 aa  97.8  1e-19  Methylobacterium sp. 4-46  Bacteria  normal  0.439532  normal  0.466453 
 
 
-
 
NC_013223  Dret_0548  two component, sigma54 specific, transcriptional regulator, Fis family  46.28 
 
 
452 aa  97.1  2e-19  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.902927  normal 
 
 
-
 
NC_009675  Anae109_3404  two component, sigma54 specific, Fis family transcriptional regulator  47.9 
 
 
455 aa  97.1  2e-19  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.235439  normal  0.675632 
 
 
-
 
NC_011894  Mnod_6543  two component, sigma54 specific, transcriptional regulator, Fis family  38.12 
 
 
456 aa  96.3  4e-19  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_2137  two component response regulator  45.38 
 
 
454 aa  95.5  6e-19  Agrobacterium vitis S4  Bacteria  normal  0.354757  n/a   
 
 
-
 
NC_013132  Cpin_6438  putative two component, sigma54 specific, transcriptional regulator, Fis family  48.65 
 
 
394 aa  95.5  6e-19  Chitinophaga pinensis DSM 2588  Bacteria  decreased coverage  0.00615091  normal  0.383003 
 
 
-
 
NC_004310  BR1115  nitrogen regulation protein NtrX  46.22 
 
 
453 aa  95.1  9e-19  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_1817  two component, sigma54 specific, transcriptional regulator, Fis family  44.54 
 
 
454 aa  94.7  9e-19  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.40055  normal  0.0414102 
 
 
-
 
NC_011369  Rleg2_1630  two component, sigma54 specific, transcriptional regulator, Fis family  44.54 
 
 
454 aa  95.1  9e-19  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.325918  normal  0.3827 
 
 
-
 
NC_009505  BOV_1073  nitrogen regulation protein NtrX  46.22 
 
 
453 aa  94.7  9e-19  Brucella ovis ATCC 25840  Bacteria  normal  0.13211  n/a   
 
 
-
 
NC_007964  Nham_1839  two component, sigma54 specific, Fis family transcriptional regulator  36.87 
 
 
456 aa  94.4  1e-18  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_2823  sigma-54 factor interaction domain-containing protein  37.02 
 
 
456 aa  93.6  2e-18  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.337446 
 
 
-
 
NC_007493  RSP_2840  nitrogen assimilation transcriptional regulator, NtrX  40 
 
 
476 aa  93.6  2e-18  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_2210  two component, sigma54 specific, Fis family transcriptional regulator  46.22 
 
 
453 aa  94  2e-18  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_2240  two component, sigma54 specific, Fis family transcriptional regulator  40 
 
 
465 aa  94  2e-18  Jannaschia sp. CCS1  Bacteria  normal  0.261318  normal 
 
 
-
 
NC_009636  Smed_1092  two component, sigma54 specific, Fis family transcriptional regulator  45.38 
 
 
454 aa  94  2e-18  Sinorhizobium medicae WSM419  Bacteria  normal  0.452222  normal 
 
 
-
 
NC_013216  Dtox_0970  two component, sigma54 specific, transcriptional regulator, Fis family  38.98 
 
 
459 aa  93.6  2e-18  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.000694494  normal  0.524712 
 
 
-
 
NC_009049  Rsph17029_1454  two component, sigma54 specific, Fis family transcriptional regulator  40 
 
 
476 aa  93.6  2e-18  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.396257  normal  0.115169 
 
 
-
 
NC_011757  Mchl_3050  two component, sigma54 specific, transcriptional regulator, Fis family  37.02 
 
 
456 aa  93.6  2e-18  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_4127  two component, sigma54 specific, Fis family transcriptional regulator  40.83 
 
 
462 aa  94.4  2e-18  Paracoccus denitrificans PD1222  Bacteria  normal  0.142345  normal  0.982236 
 
 
-
 
NC_009428  Rsph17025_1490  two component, sigma54 specific, Fis family transcriptional regulator  40 
 
 
476 aa  93.2  3e-18  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.592217 
 
 
-
 
NC_010725  Mpop_2941  two component, sigma54 specific, transcriptional regulator, Fis family  37.02 
 
 
456 aa  93.6  3e-18  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_1521  two component, sigma54 specific, Fis family transcriptional regulator  42.74 
 
 
455 aa  92.8  4e-18  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.0597009  normal  0.119428 
 
 
-
 
NC_013061  Phep_2519  sigma-54 factor interaction domain-containing protein  42.62 
 
 
468 aa  92.4  5e-18  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_1447  nitrogen assimilation regulatory protein ntrX  36.31 
 
 
456 aa  92.4  6e-18  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.835635  normal 
 
 
-
 
NC_010424  Daud_0677  response regulator receiver modulated metal dependent phosphohydrolase  42.86 
 
 
343 aa  92  6e-18  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.756866  n/a   
 
 
-
 
NC_008254  Meso_1616  two component, sigma54 specific, Fis family transcriptional regulator  46.22 
 
 
453 aa  92  7e-18  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_1572  nitrogen assimilation regulator receiver protein  38.33 
 
 
471 aa  90.9  1e-17  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.181589  normal  0.0771654 
 
 
-
 
NC_008044  TM1040_1359  two component, sigma54 specific, Fis family transcriptional regulator  39.17 
 
 
472 aa  91.3  1e-17  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_1312  two component, sigma54 specific, Fis family transcriptional regulator  30.26 
 
 
455 aa  90.5  2e-17  Desulfotomaculum reducens MI-1  Bacteria  normal  0.502008  n/a   
 
 
-
 
NC_002967  TDE1969  sigma-54 dependent transcriptional regulator/response regulator  42.24 
 
 
473 aa  90.5  2e-17  Treponema denticola ATCC 35405  Bacteria  normal  0.440374  n/a   
 
 
-
 
NC_008009  Acid345_1734  two component, sigma54 specific, Fis family transcriptional regulator  45.3 
 
 
461 aa  90.5  2e-17  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.473605 
 
 
-
 
NC_013216  Dtox_1013  two component, sigma54 specific, transcriptional regulator, Fis family  34.78 
 
 
456 aa  90.5  2e-17  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.0616674 
 
 
-
 
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