More than 300 homologs were found in PanDaTox collection
for query gene Bind_0974 on replicon NC_010581
Organism: Beijerinckia indica subsp. indica ATCC 9039



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010581  Bind_0974  two component LuxR family transcriptional regulator  100 
 
 
309 aa  622  1e-177  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.883175  normal  0.426964 
 
 
-
 
NC_009485  BBta_0652  two component LuxR family transcriptional regulator  57.43 
 
 
305 aa  354  1e-96  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0800453  normal  0.813173 
 
 
-
 
NC_011004  Rpal_1441  two component transcriptional regulator, LuxR family  59.06 
 
 
308 aa  345  7e-94  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1250  two component LuxR family transcriptional regulator  57.58 
 
 
309 aa  344  8e-94  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.886948  normal 
 
 
-
 
NC_007958  RPD_3866  response regulator receiver  57.58 
 
 
309 aa  341  1e-92  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.370865  normal 
 
 
-
 
NC_009620  Smed_4179  response regulator receiver protein  57 
 
 
309 aa  332  7.000000000000001e-90  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.15819 
 
 
-
 
NC_010511  M446_0591  two component LuxR family transcriptional regulator  59.67 
 
 
301 aa  330  1e-89  Methylobacterium sp. 4-46  Bacteria  normal  0.477799  hitchhiker  0.00469436 
 
 
-
 
NC_010725  Mpop_3574  two component transcriptional regulator, LuxR family  61.33 
 
 
301 aa  329  4e-89  Methylobacterium populi BJ001  Bacteria  normal  0.0249095  normal 
 
 
-
 
NC_011369  Rleg2_3066  two component transcriptional regulator, LuxR family  55.18 
 
 
305 aa  320  1.9999999999999998e-86  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3383  response regulator receiver  59.47 
 
 
300 aa  317  2e-85  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3692  two component transcriptional regulator, LuxR family  59.47 
 
 
300 aa  316  3e-85  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.170876  normal 
 
 
-
 
NC_012850  Rleg_3321  two component transcriptional regulator, LuxR family  54.15 
 
 
305 aa  315  5e-85  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.536368 
 
 
-
 
NC_011989  Avi_3499  transcriptional regulator LuxR family  54.46 
 
 
312 aa  311  5.999999999999999e-84  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_2002  two component transcriptional regulator, LuxR family  51.13 
 
 
306 aa  308  5e-83  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010505  Mrad2831_5514  two component LuxR family transcriptional regulator  58.28 
 
 
305 aa  300  3e-80  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.211273 
 
 
-
 
NC_008740  Maqu_3869  response regulator receiver protein  50.81 
 
 
301 aa  288  6e-77  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0962  response regulator receiver protein  48.21 
 
 
304 aa  288  1e-76  Marinomonas sp. MWYL1  Bacteria  normal  0.512477  normal 
 
 
-
 
NC_007912  Sde_2977  response regulator receiver domain-containing protein  45.67 
 
 
303 aa  276  4e-73  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.13601 
 
 
-
 
NC_008825  Mpe_A0671  two component LuxR family transcriptional regulator  47.18 
 
 
333 aa  266  2e-70  Methylibium petroleiphilum PM1  Bacteria  normal  0.0205263  normal 
 
 
-
 
NC_008709  Ping_2984  two component transcriptional regulator, LuxR family protein  45.1 
 
 
295 aa  260  2e-68  Psychromonas ingrahamii 37  Bacteria  normal  0.43543  normal  0.546259 
 
 
-
 
NC_007298  Daro_1445  two component LuxR family transcriptional regulator  46.49 
 
 
308 aa  249  3e-65  Dechloromonas aromatica RCB  Bacteria  normal  0.446624  normal 
 
 
-
 
NC_007794  Saro_1665  two component LuxR family transcriptional regulator  43.54 
 
 
307 aa  249  6e-65  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_00878  two-component response regulator  41.61 
 
 
298 aa  247  2e-64  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3397  two component LuxR family transcriptional regulator  48.24 
 
 
328 aa  246  4e-64  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_1761  two component LuxR family transcriptional regulator  44.67 
 
 
311 aa  243  3e-63  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_1731  response regulator receiver protein  44.71 
 
 
361 aa  242  5e-63  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.319975 
 
 
-
 
NC_013422  Hneap_1587  two component transcriptional regulator, LuxR family  43.56 
 
 
292 aa  239  2.9999999999999997e-62  Halothiobacillus neapolitanus c2  Bacteria  normal  0.522901  n/a   
 
 
-
 
NC_008825  Mpe_A3585  two component LuxR family transcriptional regulator  46.6 
 
 
306 aa  239  4e-62  Methylibium petroleiphilum PM1  Bacteria  normal  0.295986  normal 
 
 
-
 
NC_007948  Bpro_0562  two component LuxR family transcriptional regulator  45.36 
 
 
297 aa  239  5.999999999999999e-62  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_0979  response regulator receiver protein  44.44 
 
 
336 aa  236  4e-61  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_1083  two component LuxR family transcriptional regulator  43.52 
 
 
316 aa  235  6e-61  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007948  Bpro_1354  two component LuxR family transcriptional regulator  45.29 
 
 
349 aa  233  3e-60  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_5666  two component LuxR family transcriptional regulator  42.49 
 
 
312 aa  233  4.0000000000000004e-60  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.917296 
 
 
-
 
NC_008752  Aave_3524  two component LuxR family transcriptional regulator  44.13 
 
 
353 aa  233  4.0000000000000004e-60  Acidovorax citrulli AAC00-1  Bacteria  normal  0.406085  normal  0.428998 
 
 
-
 
NC_008061  Bcen_3730  two component LuxR family transcriptional regulator  42.49 
 
 
312 aa  231  8.000000000000001e-60  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4638  two component LuxR family transcriptional regulator  42.49 
 
 
312 aa  231  8.000000000000001e-60  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_0218  two component LuxR family transcriptional regulator  41.69 
 
 
339 aa  231  2e-59  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_3147  two component transcriptional regulator, LuxR family  42.01 
 
 
302 aa  225  6e-58  Variovorax paradoxus S110  Bacteria  normal  0.235206  n/a   
 
 
-
 
NC_012791  Vapar_4238  two component transcriptional regulator, LuxR family  41.25 
 
 
356 aa  221  8e-57  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B1713  two component LuxR family transcriptional regulator  38.14 
 
 
361 aa  214  1.9999999999999998e-54  Burkholderia xenovorans LB400  Bacteria  normal  0.310925  normal 
 
 
-
 
NC_010571  Oter_1720  two component LuxR family transcriptional regulator  35.51 
 
 
301 aa  160  3e-38  Opitutus terrae PB90-1  Bacteria  normal  0.162572  normal  0.616267 
 
 
-
 
NC_004578  PSPTO_4080  DNA-binding response regulator, LuxR family  50 
 
 
222 aa  154  2e-36  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.542388  n/a   
 
 
-
 
NC_007413  Ava_4136  response regulator receiver Signal transduction histidine kinase  52.59 
 
 
440 aa  136  5e-31  Anabaena variabilis ATCC 29413  Bacteria  decreased coverage  0.00000660181  hitchhiker  0.00876613 
 
 
-
 
NC_010627  Bphy_7700  multi-sensor signal transduction histidine kinase  53.49 
 
 
541 aa  136  5e-31  Burkholderia phymatum STM815  Bacteria  normal  0.163324  normal  0.507763 
 
 
-
 
NC_007413  Ava_2562  response regulator receiver Signal transduction histidine kinase  53.45 
 
 
437 aa  135  9e-31  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_1118  response regulator receiver sensor signal transduction histidine kinase  50.78 
 
 
452 aa  134  9.999999999999999e-31  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.000972917  n/a   
 
 
-
 
NC_013440  Hoch_6548  response regulator receiver sensor signal transduction histidine kinase  52.99 
 
 
397 aa  134  1.9999999999999998e-30  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.543575 
 
 
-
 
NC_010625  Bphy_6559  multi-sensor signal transduction histidine kinase  51.94 
 
 
541 aa  134  1.9999999999999998e-30  Burkholderia phymatum STM815  Bacteria  normal  normal  0.59439 
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  52.59 
 
 
337 aa  134  1.9999999999999998e-30  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  50 
 
 
566 aa  132  5e-30  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal 
 
 
-
 
NC_007413  Ava_2149  response regulator receiver Signal transduction histidine kinase  54.31 
 
 
407 aa  131  1.0000000000000001e-29  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.142048 
 
 
-
 
NC_014248  Aazo_4465  response regulator receiver sensor signal transduction histidine kinase  50.86 
 
 
437 aa  130  4.0000000000000003e-29  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3134  response regulator receiver protein  50 
 
 
200 aa  128  2.0000000000000002e-28  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_0809  response regulator receiver sensor signal transduction histidine kinase  50.42 
 
 
367 aa  127  2.0000000000000002e-28  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_2175  response regulator receiver sensor signal transduction histidine kinase  51.28 
 
 
395 aa  125  8.000000000000001e-28  Haliangium ochraceum DSM 14365  Bacteria  normal  0.924768  normal  0.400775 
 
 
-
 
NC_013730  Slin_2507  two component, sigma54 specific, transcriptional regulator, Fis family  48.72 
 
 
488 aa  124  2e-27  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.182398 
 
 
-
 
NC_010623  Bphy_4530  response regulator receiver sensor signal transduction histidine kinase  37.26 
 
 
386 aa  123  4e-27  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_4155  response regulator receiver sensor signal transduction histidine kinase  50 
 
 
440 aa  122  6e-27  Trichodesmium erythraeum IMS101  Bacteria  normal  0.50715  normal 
 
 
-
 
NC_010551  BamMC406_1236  response regulator receiver sensor signal transduction histidine kinase  47.01 
 
 
386 aa  122  9e-27  Burkholderia ambifaria MC40-6  Bacteria  normal  0.493129  normal 
 
 
-
 
NC_010681  Bphyt_2397  two component transcriptional regulator, AraC family  48.33 
 
 
269 aa  120  3.9999999999999996e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  0.92999  normal  0.351016 
 
 
-
 
NC_010676  Bphyt_6236  multi-sensor signal transduction histidine kinase  44.14 
 
 
553 aa  119  4.9999999999999996e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.914679 
 
 
-
 
NC_009901  Spea_0629  response regulator receiver modulated metal dependent phosphohydrolase  46.55 
 
 
339 aa  119  7.999999999999999e-26  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_3199  response regulator receiver modulated metal dependent phosphohydrolase  47.01 
 
 
339 aa  118  9.999999999999999e-26  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_2347  response regulator receiver protein  51.26 
 
 
202 aa  118  1.9999999999999998e-25  Roseiflexus sp. RS-1  Bacteria  normal  0.56815  normal 
 
 
-
 
NC_008321  Shewmr4_0716  response regulator receiver modulated metal dependent phosphohydrolase  47.41 
 
 
338 aa  117  3e-25  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3306  response regulator receiver modulated metal dependent phosphohydrolase  47.41 
 
 
338 aa  117  3e-25  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3418  response regulator receiver modulated metal dependent phosphohydrolase  47.41 
 
 
338 aa  117  3e-25  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_010557  BamMC406_6071  two component AraC family transcriptional regulator  46.67 
 
 
271 aa  116  3.9999999999999997e-25  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008392  Bamb_6368  two component AraC family transcriptional regulator  46.67 
 
 
271 aa  116  3.9999999999999997e-25  Burkholderia ambifaria AMMD  Bacteria  normal  0.434467  normal 
 
 
-
 
NC_011138  MADE_03429  two-component system response regulator (hybrid family) protein  45.67 
 
 
358 aa  116  3.9999999999999997e-25  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1228  response regulator receiver modulated diguanylate cyclase  43.2 
 
 
349 aa  115  6.9999999999999995e-25  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_3141  response regulator receiver modulated metal dependent phosphohydrolase  46.55 
 
 
338 aa  115  7.999999999999999e-25  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2262  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  32.05 
 
 
853 aa  115  8.999999999999998e-25  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3504  response regulator receiver modulated metal dependent phosphohydrolase  45.69 
 
 
338 aa  115  1.0000000000000001e-24  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_4229  response regulator receiver sensor signal transduction histidine kinase  47.01 
 
 
383 aa  115  1.0000000000000001e-24  'Nostoc azollae' 0708  Bacteria  normal  0.599633  n/a   
 
 
-
 
NC_011663  Sbal223_0859  response regulator receiver modulated metal dependent phosphohydrolase  45.69 
 
 
338 aa  115  1.0000000000000001e-24  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_0871  response regulator receiver modulated metal dependent phosphohydrolase  45.69 
 
 
338 aa  115  1.0000000000000001e-24  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_0836  response regulator receiver modulated metal dependent phosphohydrolase  45.69 
 
 
338 aa  115  1.0000000000000001e-24  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_0978  response regulator receiver modulated diguanylate cyclase  30.38 
 
 
322 aa  115  1.0000000000000001e-24  Psychromonas ingrahamii 37  Bacteria  normal  0.97362  decreased coverage  0.00116316 
 
 
-
 
NC_009012  Cthe_1826  response regulator receiver sensor signal transduction histidine kinase  38.36 
 
 
363 aa  115  1.0000000000000001e-24  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1577  response regulator receiver modulated diguanylate cyclase  37.72 
 
 
314 aa  114  2.0000000000000002e-24  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_007796  Mhun_1941  response regulator receiver domain-containing protein  46.15 
 
 
156 aa  114  2.0000000000000002e-24  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_012918  GM21_3242  response regulator receiver sensor signal transduction histidine kinase  47.46 
 
 
441 aa  114  2.0000000000000002e-24  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008700  Sama_2951  response regulator receiver protein  46.55 
 
 
340 aa  114  2.0000000000000002e-24  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.129077 
 
 
-
 
NC_004347  SO_0860  response regulator  45.69 
 
 
339 aa  114  3e-24  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_2150  response regulator receiver Signal transduction histidine kinase  45.24 
 
 
443 aa  113  3e-24  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.394463 
 
 
-
 
NC_010571  Oter_3794  response regulator receiver sensor signal transduction histidine kinase  46.55 
 
 
376 aa  113  5e-24  Opitutus terrae PB90-1  Bacteria  normal  0.0277983  normal  0.543799 
 
 
-
 
NC_013161  Cyan8802_1380  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  42.31 
 
 
715 aa  112  7.000000000000001e-24  Cyanothece sp. PCC 8802  Bacteria  normal  0.923401  normal 
 
 
-
 
NC_011726  PCC8801_1350  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  42.31 
 
 
715 aa  112  7.000000000000001e-24  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011146  Gbem_1018  response regulator receiver sensor signal transduction histidine kinase  44.92 
 
 
441 aa  112  9e-24  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00729938  n/a   
 
 
-
 
NC_012560  Avin_29300  Response regulator  47.58 
 
 
310 aa  111  2.0000000000000002e-23  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008062  Bcen_6528  two component AraC family transcriptional regulator  43.31 
 
 
271 aa  110  2.0000000000000002e-23  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.485144  n/a   
 
 
-
 
NC_008544  Bcen2424_6762  two component AraC family transcriptional regulator  43.31 
 
 
271 aa  110  2.0000000000000002e-23  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.295507 
 
 
-
 
NC_010512  Bcenmc03_6350  two component AraC family transcriptional regulator  43.2 
 
 
271 aa  110  3e-23  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.787195  normal  0.900493 
 
 
-
 
NC_013522  Taci_0090  two component transcriptional regulator, winged helix family  44.54 
 
 
228 aa  110  3e-23  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_1373  response regulator receiver modulated metal dependent phosphohydrolase  42.55 
 
 
365 aa  110  3e-23  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_3544  response regulator receiver modulated diguanylate cyclase  45.9 
 
 
322 aa  110  4.0000000000000004e-23  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0106122 
 
 
-
 
NC_013161  Cyan8802_3359  response regulator receiver sensor signal transduction histidine kinase  42.52 
 
 
395 aa  110  4.0000000000000004e-23  Cyanothece sp. PCC 8802  Bacteria  normal  0.361398  normal 
 
 
-
 
NC_011726  PCC8801_2743  response regulator receiver sensor signal transduction histidine kinase  42.52 
 
 
395 aa  110  4.0000000000000004e-23  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007509  Bcep18194_C7377  two component AraC family transcriptional regulator  45.08 
 
 
278 aa  109  7.000000000000001e-23  Burkholderia sp. 383  Bacteria  normal  0.0377301  normal  0.284562 
 
 
-
 
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