More than 300 homologs were found in PanDaTox collection
for query gene Bcav_4002 on replicon NC_012669
Organism: Beutenbergia cavernae DSM 12333



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012669  Bcav_4002  two component transcriptional regulator, LuxR family  100 
 
 
222 aa  407  1e-113  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.947887  normal  0.770727 
 
 
-
 
NC_012669  Bcav_0102  two component transcriptional regulator, LuxR family  63.64 
 
 
221 aa  255  4e-67  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0637251  normal 
 
 
-
 
NC_013947  Snas_4946  two component transcriptional regulator, LuxR family  58.72 
 
 
224 aa  242  3e-63  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.13115  normal 
 
 
-
 
NC_013510  Tcur_0110  two component transcriptional regulator, LuxR family  59.17 
 
 
222 aa  241  5e-63  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_2037  two component transcriptional regulator, LuxR family  59.17 
 
 
225 aa  241  6e-63  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137578 
 
 
-
 
NC_014210  Ndas_3601  two component transcriptional regulator, LuxR family  59.91 
 
 
222 aa  236  2e-61  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.324048  normal 
 
 
-
 
NC_013595  Sros_8793  response regulator receiver protein  58.26 
 
 
221 aa  234  1e-60  Streptosporangium roseum DSM 43021  Bacteria  normal  0.321987  normal 
 
 
-
 
NC_013757  Gobs_2015  two component transcriptional regulator, LuxR family  57.27 
 
 
232 aa  233  2e-60  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.706703  n/a   
 
 
-
 
NC_013131  Caci_1951  two component transcriptional regulator, LuxR family  56.56 
 
 
226 aa  230  1e-59  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0924411 
 
 
-
 
NC_013595  Sros_1523  response regulator receiver protein  58.26 
 
 
215 aa  231  1e-59  Streptosporangium roseum DSM 43021  Bacteria  normal  0.894169  normal  0.0152488 
 
 
-
 
NC_013235  Namu_3387  two component transcriptional regulator, LuxR family  56.31 
 
 
223 aa  229  2e-59  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  3.86408e-05  hitchhiker  0.000570848 
 
 
-
 
NC_014210  Ndas_1972  two component transcriptional regulator, LuxR family  59.45 
 
 
217 aa  229  3e-59  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  7.94288e-08  unclonable  3.32591e-08 
 
 
-
 
NC_012669  Bcav_1731  two component transcriptional regulator, LuxR family  56.48 
 
 
224 aa  226  1e-58  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.550315  normal 
 
 
-
 
NC_013131  Caci_7105  two component transcriptional regulator, LuxR family  57.85 
 
 
241 aa  226  2e-58  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.106023  normal  0.469545 
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  58.3 
 
 
226 aa  226  3e-58  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_013595  Sros_4508  response regulator receiver protein  57.73 
 
 
219 aa  226  3e-58  Streptosporangium roseum DSM 43021  Bacteria  normal  0.401356  normal  0.568133 
 
 
-
 
NC_013947  Snas_3287  two component transcriptional regulator, LuxR family  54.71 
 
 
233 aa  225  3e-58  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0842926  normal  0.330639 
 
 
-
 
NC_009921  Franean1_7161  two component LuxR family transcriptional regulator  55.91 
 
 
225 aa  224  6e-58  Frankia sp. EAN1pec  Bacteria  normal  0.0588186  normal  0.118819 
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  56.7 
 
 
227 aa  224  6e-58  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  55.61 
 
 
226 aa  224  8e-58  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_013947  Snas_5265  two component transcriptional regulator, LuxR family  56.68 
 
 
218 aa  223  2e-57  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_4684  two component LuxR family transcriptional regulator  55.35 
 
 
223 aa  223  2e-57  Frankia sp. EAN1pec  Bacteria  normal  0.51425  normal 
 
 
-
 
NC_007333  Tfu_0767  LuxR response regulator receiver  57.53 
 
 
221 aa  223  2e-57  Thermobifida fusca YX  Bacteria  normal  0.88397  n/a   
 
 
-
 
NC_013131  Caci_6049  two component transcriptional regulator, LuxR family  61.99 
 
 
224 aa  222  3e-57  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.764436  normal 
 
 
-
 
NC_013595  Sros_5619  response regulator receiver protein  58.14 
 
 
226 aa  222  3e-57  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0556461  normal  0.802866 
 
 
-
 
NC_013093  Amir_6405  two component transcriptional regulator, LuxR family  55.91 
 
 
225 aa  221  9e-57  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_2822  two component transcriptional regulator, LuxR family  55.86 
 
 
228 aa  220  2e-56  Eggerthella lenta DSM 2243  Bacteria  normal  0.0415698  normal  0.590713 
 
 
-
 
NC_013093  Amir_7009  two component transcriptional regulator, LuxR family  54.13 
 
 
218 aa  219  3e-56  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0896567  n/a   
 
 
-
 
NC_013595  Sros_8243  response regulator receiver protein  57.21 
 
 
217 aa  219  3e-56  Streptosporangium roseum DSM 43021  Bacteria  normal  0.931194  normal  0.230681 
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  55.96 
 
 
225 aa  218  5e-56  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_009380  Strop_4132  response regulator receiver  56.68 
 
 
235 aa  218  8e-56  Salinispora tropica CNB-440  Bacteria  normal  0.232221  normal 
 
 
-
 
NC_013093  Amir_4511  two component transcriptional regulator, LuxR family  55.45 
 
 
226 aa  217  1e-55  Actinosynnema mirum DSM 43827  Bacteria  normal  0.11054  n/a   
 
 
-
 
NC_013441  Gbro_4119  response regulator receiver  53.6 
 
 
230 aa  215  3e-55  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  59.82 
 
 
220 aa  215  4e-55  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal 
 
 
-
 
NC_013172  Bfae_11600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  56.88 
 
 
225 aa  215  4e-55  Brachybacterium faecium DSM 4810  Bacteria  decreased coverage  0.00120804  n/a   
 
 
-
 
NC_013093  Amir_2737  two component transcriptional regulator, LuxR family  58.74 
 
 
227 aa  215  4e-55  Actinosynnema mirum DSM 43827  Bacteria  normal  0.418014  n/a   
 
 
-
 
NC_013131  Caci_1616  two component transcriptional regulator, LuxR family  55.95 
 
 
226 aa  215  5e-55  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0231149  normal  0.0629914 
 
 
-
 
NC_013170  Ccur_01320  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  52.51 
 
 
261 aa  215  5e-55  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_7301  response regulator receiver protein  54.3 
 
 
220 aa  214  9e-55  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_6963  two component transcriptional regulator, LuxR family  53.36 
 
 
225 aa  214  1e-54  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.029709  normal 
 
 
-
 
NC_013947  Snas_4662  two component transcriptional regulator, LuxR family  54.17 
 
 
221 aa  214  1e-54  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.142047  hitchhiker  0.00679998 
 
 
-
 
NC_013530  Xcel_1633  two component transcriptional regulator, LuxR family  60.47 
 
 
241 aa  213  1e-54  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.457155  n/a   
 
 
-
 
NC_013739  Cwoe_1269  two component transcriptional regulator, LuxR family  56.31 
 
 
226 aa  213  1e-54  Conexibacter woesei DSM 14684  Bacteria  normal  hitchhiker  0.00432991 
 
 
-
 
NC_013172  Bfae_20460  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  52.97 
 
 
229 aa  213  2e-54  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0212792  n/a   
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  56.39 
 
 
229 aa  213  2e-54  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0683  two component transcriptional regulator, LuxR family  54.11 
 
 
234 aa  213  2e-54  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.344925  normal 
 
 
-
 
NC_013595  Sros_3244  response regulator receiver protein  56.25 
 
 
218 aa  213  2e-54  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.000568428  normal  0.332742 
 
 
-
 
NC_013947  Snas_2557  two component transcriptional regulator, LuxR family  52.94 
 
 
224 aa  213  2e-54  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.231398  normal  0.0978001 
 
 
-
 
NC_009921  Franean1_6511  two component LuxR family transcriptional regulator  57.01 
 
 
215 aa  213  3e-54  Frankia sp. EAN1pec  Bacteria  normal  normal  0.100644 
 
 
-
 
NC_014210  Ndas_2087  two component transcriptional regulator, LuxR family  55.86 
 
 
247 aa  212  3e-54  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.73112  normal 
 
 
-
 
NC_013739  Cwoe_4855  two component transcriptional regulator, LuxR family  54.98 
 
 
244 aa  212  5e-54  Conexibacter woesei DSM 14684  Bacteria  normal  0.093919  normal 
 
 
-
 
NC_013947  Snas_1740  two component transcriptional regulator, LuxR family  54.42 
 
 
228 aa  211  7e-54  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_0303  two component LuxR family transcriptional regulator  56.74 
 
 
214 aa  210  1e-53  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_36930  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  54.38 
 
 
222 aa  210  1e-53  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.811978 
 
 
-
 
NC_013595  Sros_4577  response regulator receiver protein  51.8 
 
 
223 aa  210  2e-53  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.172592 
 
 
-
 
NC_013093  Amir_4051  two component transcriptional regulator, LuxR family  55.71 
 
 
225 aa  210  2e-53  Actinosynnema mirum DSM 43827  Bacteria  decreased coverage  0.00308286  n/a   
 
 
-
 
NC_009664  Krad_4263  two component transcriptional regulator, LuxR family  53.92 
 
 
230 aa  210  2e-53  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.455968 
 
 
-
 
NC_013131  Caci_7812  two component transcriptional regulator, LuxR family  53.28 
 
 
227 aa  209  3e-53  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_3390  two component LuxR family transcriptional regulator  53.18 
 
 
226 aa  209  4e-53  Frankia sp. EAN1pec  Bacteria  normal  0.0389848  normal 
 
 
-
 
NC_007333  Tfu_1845  LuxR response regulator receiver  54.63 
 
 
215 aa  209  4e-53  Thermobifida fusca YX  Bacteria  hitchhiker  0.00433344  n/a   
 
 
-
 
NC_013530  Xcel_1618  two component transcriptional regulator, LuxR family  52.97 
 
 
220 aa  208  6e-53  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0951  LuxR family two component transcriptional regulator  53.67 
 
 
221 aa  208  6e-53  Thermobispora bispora DSM 43833  Bacteria  normal  0.392411  normal  0.343359 
 
 
-
 
NC_009953  Sare_1782  two component LuxR family transcriptional regulator  54.55 
 
 
230 aa  208  7e-53  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.0025253 
 
 
-
 
NC_014210  Ndas_4857  two component transcriptional regulator, LuxR family  53.65 
 
 
234 aa  207  1e-52  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.243741 
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  56.16 
 
 
225 aa  206  2e-52  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_013595  Sros_3251  response regulator receiver protein  52.49 
 
 
221 aa  206  2e-52  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0793449  normal 
 
 
-
 
NC_013131  Caci_8900  two component transcriptional regulator, LuxR family  56.22 
 
 
221 aa  206  3e-52  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.967084  normal 
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  56.16 
 
 
220 aa  206  3e-52  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_013131  Caci_7160  two component transcriptional regulator, LuxR family  52.23 
 
 
224 aa  206  3e-52  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_4491  two component transcriptional regulator, LuxR family  56.56 
 
 
225 aa  205  5e-52  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_3727  two component LuxR family transcriptional regulator  51.35 
 
 
226 aa  205  5e-52  Frankia sp. EAN1pec  Bacteria  normal  normal  0.554715 
 
 
-
 
NC_013521  Sked_08490  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  52 
 
 
236 aa  205  5e-52  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.199706  normal  0.526513 
 
 
-
 
NC_011886  Achl_3912  two component transcriptional regulator, LuxR family  53.36 
 
 
230 aa  204  7e-52  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008697  Noca_4902  response regulator receiver  54.79 
 
 
216 aa  204  9e-52  Nocardioides sp. JS614  Bacteria  normal  0.443208  normal  0.676579 
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  53.6 
 
 
239 aa  204  1e-51  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_012669  Bcav_2822  two component transcriptional regulator, LuxR family  51.13 
 
 
231 aa  204  1e-51  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.311075  normal 
 
 
-
 
NC_009921  Franean1_3185  two component LuxR family transcriptional regulator  53.85 
 
 
223 aa  203  1e-51  Frankia sp. EAN1pec  Bacteria  normal  0.704721  normal 
 
 
-
 
NC_013131  Caci_3748  two component transcriptional regulator, LuxR family  53.92 
 
 
236 aa  203  2e-51  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_010816  BLD_0671  putative response regulator  45.87 
 
 
248 aa  202  3e-51  Bifidobacterium longum DJO10A  Bacteria  normal  0.248332  n/a   
 
 
-
 
NC_012669  Bcav_2449  two component transcriptional regulator, LuxR family  57.73 
 
 
220 aa  202  4e-51  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.729355  normal 
 
 
-
 
NC_009380  Strop_1796  response regulator receiver  53.18 
 
 
230 aa  202  4e-51  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_4134  two component LuxR family transcriptional regulator  48.97 
 
 
250 aa  201  6e-51  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_2533  response regulator receiver protein  51.82 
 
 
220 aa  201  7e-51  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.495874 
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  55.96 
 
 
215 aa  201  7e-51  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_009921  Franean1_7117  two component LuxR family transcriptional regulator  54.21 
 
 
214 aa  201  7e-51  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_4652  two component transcriptional regulator, LuxR family  54.42 
 
 
219 aa  201  8e-51  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0949639  normal 
 
 
-
 
NC_013947  Snas_2469  two component transcriptional regulator, LuxR family  51.58 
 
 
214 aa  200  1e-50  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.126163  normal 
 
 
-
 
NC_013739  Cwoe_3988  two component transcriptional regulator, LuxR family  50.68 
 
 
228 aa  199  2e-50  Conexibacter woesei DSM 14684  Bacteria  normal  0.0354189  normal  0.736565 
 
 
-
 
NC_013947  Snas_5644  two component transcriptional regulator, LuxR family  54.75 
 
 
225 aa  199  2e-50  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.114252 
 
 
-
 
NC_013131  Caci_0956  two component transcriptional regulator, LuxR family  54.34 
 
 
221 aa  199  2e-50  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1049  two component transcriptional regulator, LuxR family  53.81 
 
 
222 aa  199  3e-50  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.661499  normal  0.245945 
 
 
-
 
NC_013131  Caci_2656  two component transcriptional regulator, LuxR family  50.91 
 
 
226 aa  199  3e-50  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.161573  normal 
 
 
-
 
NC_013739  Cwoe_4937  two component transcriptional regulator, LuxR family  53.49 
 
 
224 aa  199  3e-50  Conexibacter woesei DSM 14684  Bacteria  normal  0.570807  normal  0.210467 
 
 
-
 
NC_013131  Caci_8412  two component transcriptional regulator, LuxR family  52.78 
 
 
239 aa  198  5e-50  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_1652  two component LuxR family transcriptional regulator  59.26 
 
 
217 aa  198  5e-50  Frankia sp. EAN1pec  Bacteria  normal  0.495895  normal  0.106337 
 
 
-
 
NC_011886  Achl_2270  two component transcriptional regulator, LuxR family  50 
 
 
242 aa  198  6e-50  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  1.13212e-10 
 
 
-
 
NC_009664  Krad_4217  two component transcriptional regulator, LuxR family  54.5 
 
 
225 aa  198  6e-50  Kineococcus radiotolerans SRS30216  Bacteria  decreased coverage  0.000816589  normal  0.757819 
 
 
-
 
NC_013131  Caci_6094  two component transcriptional regulator, LuxR family  50.86 
 
 
235 aa  198  6e-50  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.634688  normal  0.121163 
 
 
-
 
NC_014210  Ndas_1477  two component transcriptional regulator, LuxR family  52.91 
 
 
234 aa  197  8e-50  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.594471  normal 
 
 
-
 
NC_009664  Krad_1350  two component transcriptional regulator, LuxR family  51.69 
 
 
249 aa  197  8e-50  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.691965  normal 
 
 
-
 
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