More than 300 homologs were found in PanDaTox collection
for query gene BamMC406_5744 on replicon NC_010557
Organism: Burkholderia ambifaria MC40-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010557  BamMC406_5744  two component heavy metal response transcriptional regulator  100 
 
 
225 aa  444  1.0000000000000001e-124  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0360294  normal  0.749662 
 
 
-
 
NC_008392  Bamb_5988  two component heavy metal response transcriptional regulator  99.11 
 
 
225 aa  441  1e-123  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_010512  Bcenmc03_6987  two component heavy metal response transcriptional regulator  94.67 
 
 
225 aa  422  1e-117  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.67799  normal  0.586494 
 
 
-
 
NC_008060  Bcen_1505  two component heavy metal response transcriptional regulator  94.67 
 
 
225 aa  422  1e-117  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.228186  n/a   
 
 
-
 
NC_008544  Bcen2424_6324  two component heavy metal response transcriptional regulator  94.67 
 
 
225 aa  422  1e-117  Burkholderia cenocepacia HI2424  Bacteria  normal  0.313253  normal 
 
 
-
 
NC_010623  Bphy_3962  two component heavy metal response transcriptional regulator  83.11 
 
 
225 aa  382  1e-105  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B1389  two component heavy metal response transcriptional regulator  84.89 
 
 
225 aa  377  1e-103  Burkholderia xenovorans LB400  Bacteria  normal  0.717226  normal  0.091392 
 
 
-
 
NC_010676  Bphyt_5224  two component heavy metal response transcriptional regulator, winged helix family  84.44 
 
 
225 aa  373  1e-102  Burkholderia phytofirmans PsJN  Bacteria  normal  0.57611  normal 
 
 
-
 
NC_007973  Rmet_1751  two component heavy metal response transcriptional regulator  70.27 
 
 
224 aa  318  3e-86  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.0784096 
 
 
-
 
NC_007347  Reut_A1815  two component heavy metal response transcriptional regulator  71.82 
 
 
224 aa  317  7.999999999999999e-86  Ralstonia eutropha JMP134  Bacteria  normal  0.275759  n/a   
 
 
-
 
NC_010682  Rpic_1760  two component heavy metal response transcriptional regulator, winged helix family  67.41 
 
 
225 aa  310  1e-83  Ralstonia pickettii 12J  Bacteria  normal  0.133831  normal  0.402692 
 
 
-
 
NC_007971  Rmet_5978  regulatory protein CzcR  67.41 
 
 
225 aa  308  5e-83  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.0000269255  normal  0.0723212 
 
 
-
 
NC_007348  Reut_B3961  heavy metal response regulator  69.55 
 
 
229 aa  301  4.0000000000000003e-81  Ralstonia eutropha JMP134  Bacteria  decreased coverage  0.00889091  n/a   
 
 
-
 
NC_007492  Pfl01_3379  two component heavy metal response transcriptional regulator  68.2 
 
 
223 aa  301  4.0000000000000003e-81  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_1986  two component heavy metal response transcriptional regulator  68.61 
 
 
223 aa  300  1e-80  Geobacter uraniireducens Rf4  Bacteria  normal  0.0566795  n/a   
 
 
-
 
NC_007492  Pfl01_0202  two component heavy metal response transcriptional regulator  65.33 
 
 
226 aa  297  9e-80  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_5186  two component heavy metal response transcriptional regulator  64.41 
 
 
223 aa  296  3e-79  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_003296  RSp0489  response regulator for cobalt zinc cadmium resistance transcription regulator protein  66.82 
 
 
224 aa  295  5e-79  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_4106  two component heavy metal response transcriptional regulator  64.41 
 
 
223 aa  295  5e-79  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.971428 
 
 
-
 
NC_010552  BamMC406_3349  two component heavy metal response transcriptional regulator  63.96 
 
 
223 aa  295  5e-79  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_3985  two component heavy metal response transcriptional regulator, winged helix family  68.33 
 
 
226 aa  293  1e-78  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_010070  Bmul_6295  two component heavy metal response transcriptional regulator  64.41 
 
 
223 aa  293  1e-78  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.803537  normal  0.219108 
 
 
-
 
NC_010682  Rpic_1841  two component heavy metal response transcriptional regulator, winged helix family  66.96 
 
 
228 aa  293  2e-78  Ralstonia pickettii 12J  Bacteria  normal  0.99331  hitchhiker  0.00000222676 
 
 
-
 
NC_008061  Bcen_4757  two component heavy metal response transcriptional regulator  63.96 
 
 
223 aa  293  2e-78  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0878196  n/a   
 
 
-
 
NC_008543  Bcen2424_3410  two component heavy metal response transcriptional regulator  63.96 
 
 
223 aa  293  2e-78  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_012849  Rpic12D_5099  two component heavy metal response transcriptional regulator, winged helix family  66.52 
 
 
228 aa  291  8e-78  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0773075 
 
 
-
 
NC_010515  Bcenmc03_3842  two component heavy metal response transcriptional regulator  64.44 
 
 
227 aa  289  2e-77  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.67414 
 
 
-
 
NC_007952  Bxe_B0708  two component heavy metal response transcriptional regulator  64 
 
 
226 aa  290  2e-77  Burkholderia xenovorans LB400  Bacteria  normal  0.328024  normal  0.9016 
 
 
-
 
NC_008061  Bcen_4683  two component heavy metal response transcriptional regulator  64.44 
 
 
228 aa  289  2e-77  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.222547  n/a   
 
 
-
 
NC_008543  Bcen2424_3680  two component heavy metal response transcriptional regulator  64.44 
 
 
228 aa  289  2e-77  Burkholderia cenocepacia HI2424  Bacteria  normal  0.224842  normal 
 
 
-
 
NC_009656  PSPA7_2348  putative two-component response regulator  65.33 
 
 
228 aa  288  3e-77  Pseudomonas aeruginosa PA7  Bacteria  normal  0.804247  n/a   
 
 
-
 
NC_008784  BMASAVP1_0010  transcriptional activator IrlR  64.44 
 
 
229 aa  288  4e-77  Burkholderia mallei SAVP1  Bacteria  normal  0.121051  n/a   
 
 
-
 
NC_006349  BMAA1028  DNA-binding response regulator IrlR  64.44 
 
 
229 aa  288  4e-77  Burkholderia mallei ATCC 23344  Bacteria  normal  0.0282692  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0030  DNA-binding response regulator IrlR  64.44 
 
 
229 aa  288  4e-77  Burkholderia pseudomallei 1710b  Bacteria  normal  0.122488  n/a   
 
 
-
 
NC_009079  BMA10247_A1180  transcriptional activator IrlR  64.44 
 
 
229 aa  288  4e-77  Burkholderia mallei NCTC 10247  Bacteria  normal  0.0831411  n/a   
 
 
-
 
NC_009075  BURPS668_A1524  transcriptional activator protein IrlR  64.44 
 
 
229 aa  288  4e-77  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1439  transcriptional activator IrlR  64.44 
 
 
229 aa  288  4e-77  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_0402  transcriptional activator IrlR  64.44 
 
 
229 aa  288  4e-77  Burkholderia mallei NCTC 10229  Bacteria  normal  0.0800763  n/a   
 
 
-
 
NC_010070  Bmul_6173  two component heavy metal response transcriptional regulator  64 
 
 
228 aa  288  5.0000000000000004e-77  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.400074 
 
 
-
 
NC_007963  Csal_0102  two component heavy metal response transcriptional regulator  65.77 
 
 
223 aa  287  8e-77  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.753235  n/a   
 
 
-
 
NC_008463  PA14_27810  putative two-component response regulator  64.89 
 
 
226 aa  287  8e-77  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_2259  two component heavy metal response transcriptional regulator  67.12 
 
 
225 aa  286  1e-76  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_2474  heavy metal response regulator  66.06 
 
 
223 aa  286  2e-76  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B2430  two component heavy metal response transcriptional regulator  63.56 
 
 
227 aa  286  2e-76  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II1376  DNA-binding response regulator IrlR  64.44 
 
 
229 aa  286  2e-76  Burkholderia thailandensis E264  Bacteria  normal  0.498923  n/a   
 
 
-
 
NC_012880  Dd703_3722  two component heavy metal response transcriptional regulator, winged helix family  63.96 
 
 
223 aa  286  2e-76  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_4465  two component heavy metal response transcriptional regulator, winged helix family  70.24 
 
 
206 aa  286  2e-76  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.0436659 
 
 
-
 
NC_010002  Daci_0451  two component heavy metal response transcriptional regulator  65.33 
 
 
230 aa  285  2.9999999999999996e-76  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_003296  RSp0655  two component response regulator transcription regulator protein  65.79 
 
 
228 aa  285  4e-76  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.81937 
 
 
-
 
NC_012918  GM21_3720  two component heavy metal response transcriptional regulator, winged helix family  63.35 
 
 
224 aa  285  4e-76  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011662  Tmz1t_4055  two component heavy metal response transcriptional regulator, winged helix family  66.06 
 
 
226 aa  285  5e-76  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3603  DNA-binding heavy metal response regulator  63.44 
 
 
229 aa  284  5.999999999999999e-76  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.203952  n/a   
 
 
-
 
NC_007005  Psyr_4800  heavy metal response regulator  63.39 
 
 
224 aa  285  5.999999999999999e-76  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  hitchhiker  0.00185939 
 
 
-
 
NC_004578  PSPTO_0378  DNA-binding heavy metal response regulator  63.39 
 
 
224 aa  284  8e-76  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_2165  two component heavy metal response transcriptional regulator, winged helix family  65.79 
 
 
232 aa  284  8e-76  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.77286 
 
 
-
 
NC_010676  Bphyt_4389  two component heavy metal response transcriptional regulator, winged helix family  63.51 
 
 
226 aa  283  1.0000000000000001e-75  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_1497  heavy metal response regulator  62.56 
 
 
228 aa  283  1.0000000000000001e-75  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_3374  heavy metal response regulator  63.44 
 
 
229 aa  283  1.0000000000000001e-75  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B1748a  hypothetical protein  63.93 
 
 
223 aa  283  1.0000000000000001e-75  Burkholderia xenovorans LB400  Bacteria  normal  0.0697031  normal  0.305387 
 
 
-
 
NC_010676  Bphyt_4933  two component heavy metal response transcriptional regulator, winged helix family  63.93 
 
 
223 aa  283  2.0000000000000002e-75  Burkholderia phytofirmans PsJN  Bacteria  normal  0.461594  normal  0.344735 
 
 
-
 
NC_010682  Rpic_1718  two component heavy metal response transcriptional regulator, winged helix family  64.04 
 
 
228 aa  283  2.0000000000000002e-75  Ralstonia pickettii 12J  Bacteria  normal  0.348336  normal 
 
 
-
 
NC_012849  Rpic12D_5335  two component heavy metal response transcriptional regulator, winged helix family  64.04 
 
 
228 aa  283  2.0000000000000002e-75  Ralstonia pickettii 12D  Bacteria  normal  0.733276  normal  0.970872 
 
 
-
 
NC_011146  Gbem_3615  two component heavy metal response transcriptional regulator, winged helix family  62.44 
 
 
224 aa  282  3.0000000000000004e-75  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_3855  two component heavy metal response transcriptional regulator  63.11 
 
 
226 aa  282  3.0000000000000004e-75  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.845216 
 
 
-
 
NC_010501  PputW619_4391  two component heavy metal response transcriptional regulator  62.5 
 
 
224 aa  281  4.0000000000000003e-75  Pseudomonas putida W619  Bacteria  normal  normal  0.593256 
 
 
-
 
NC_009512  Pput_3584  two component heavy metal response transcriptional regulator  63.39 
 
 
226 aa  281  4.0000000000000003e-75  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_3559  two component heavy metal response transcriptional regulator, winged helix family  62.16 
 
 
225 aa  282  4.0000000000000003e-75  Variovorax paradoxus S110  Bacteria  normal  0.710681  n/a   
 
 
-
 
NC_010682  Rpic_1780  two component heavy metal response transcriptional regulator, winged helix family  65.77 
 
 
228 aa  281  6.000000000000001e-75  Ralstonia pickettii 12J  Bacteria  normal  0.817023  normal  0.826624 
 
 
-
 
NC_002947  PP_2158  two component heavy metal response transcriptional regulator  63.39 
 
 
226 aa  280  9e-75  Pseudomonas putida KT2440  Bacteria  normal  0.144347  normal  0.036827 
 
 
-
 
NC_010322  PputGB1_1699  two component heavy metal response transcriptional regulator  62.95 
 
 
226 aa  280  1e-74  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.00419772 
 
 
-
 
NC_007511  Bcep18194_B2768  two component heavy metal response transcriptional regulator  63.51 
 
 
223 aa  280  1e-74  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_0344  two component heavy metal response transcriptional regulator  61.33 
 
 
231 aa  280  1e-74  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0422  two component heavy metal response transcriptional regulator  66.67 
 
 
227 aa  280  1e-74  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_5607  two-component response regulator  66.67 
 
 
229 aa  279  2e-74  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1208  two component heavy metal response transcriptional regulator, winged helix family  67.42 
 
 
226 aa  280  2e-74  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_1236  two component heavy metal response transcriptional regulator  65.75 
 
 
219 aa  280  2e-74  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_2337  two component heavy metal response transcriptional regulator  62.83 
 
 
227 aa  279  2e-74  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_3624  two component heavy metal response transcriptional regulator  64.29 
 
 
224 aa  279  3e-74  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_64570  two-component response regulator  66.22 
 
 
229 aa  278  4e-74  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU2946  DNA-binding heavy metal response regulator  64.13 
 
 
223 aa  277  8e-74  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_0836  two component heavy metal response transcriptional regulator  61.61 
 
 
224 aa  277  9e-74  Pseudomonas putida GB-1  Bacteria  normal  0.368612  normal 
 
 
-
 
NC_010501  PputW619_5178  two component heavy metal response transcriptional regulator  61.71 
 
 
225 aa  275  5e-73  Pseudomonas putida W619  Bacteria  normal  0.341313  normal 
 
 
-
 
NC_009832  Spro_1498  two component heavy metal response transcriptional regulator  64.86 
 
 
223 aa  274  9e-73  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_1461  two component heavy metal response transcriptional regulator  66.08 
 
 
227 aa  273  1.0000000000000001e-72  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_1749  two component heavy metal response transcriptional regulator  65.77 
 
 
242 aa  272  2.0000000000000002e-72  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II0376  DNA-binding response regulator IrlR  60.81 
 
 
230 aa  273  2.0000000000000002e-72  Burkholderia thailandensis E264  Bacteria  normal  0.083776  n/a   
 
 
-
 
NC_002947  PP_5383  two component heavy metal response transcriptional regulator  61.26 
 
 
225 aa  272  3e-72  Pseudomonas putida KT2440  Bacteria  normal  normal  0.651671 
 
 
-
 
NC_009092  Shew_3258  two component heavy metal response transcriptional regulator  57.14 
 
 
238 aa  272  3e-72  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00206307  normal  0.0675777 
 
 
-
 
NC_007951  Bxe_A2960  two component heavy metal response transcriptional regulator  62.16 
 
 
227 aa  272  3e-72  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C1381  two component heavy metal response transcriptional regulator  61.54 
 
 
224 aa  272  3e-72  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.961918 
 
 
-
 
NC_010681  Bphyt_1510  two component heavy metal response transcriptional regulator, winged helix family  62.61 
 
 
227 aa  272  3e-72  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007435  BURPS1710b_A1103  DNA-binding response regulator IrlR  60.36 
 
 
230 aa  271  6e-72  Burkholderia pseudomallei 1710b  Bacteria  normal  0.0630149  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2716  DNA-binding heavy metal response regulator  60.36 
 
 
230 aa  271  6e-72  Burkholderia pseudomallei 1106a  Bacteria  normal  0.558922  n/a   
 
 
-
 
NC_009075  BURPS668_A2869  transcriptional activator protein IrlR  60.36 
 
 
230 aa  271  6e-72  Burkholderia pseudomallei 668  Bacteria  normal  0.354021  n/a   
 
 
-
 
NC_010322  PputGB1_0019  two component heavy metal response transcriptional regulator  61.71 
 
 
225 aa  270  9e-72  Pseudomonas putida GB-1  Bacteria  normal  0.593373  normal 
 
 
-
 
NC_010501  PputW619_0017  two component heavy metal response transcriptional regulator  61.71 
 
 
225 aa  270  9e-72  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0017  two component heavy metal response transcriptional regulator  61.71 
 
 
225 aa  270  9e-72  Pseudomonas putida F1  Bacteria  normal  normal  0.0468746 
 
 
-
 
NC_007492  Pfl01_4663  two component heavy metal response transcriptional regulator  60.36 
 
 
225 aa  270  1e-71  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.180214  normal  0.242183 
 
 
-
 
NC_011138  MADE_00315  probable two component response regulator transcription regulator protein  61.78 
 
 
227 aa  270  1e-71  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_45880  putative two-component response regulator  59.19 
 
 
229 aa  269  2.9999999999999997e-71  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.954426 
 
 
-
 
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