More than 300 homologs were found in PanDaTox collection
for query gene BamMC406_5194 on replicon NC_010552
Organism: Burkholderia ambifaria MC40-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_2554  4-hydroxyphenylpyruvate dioxygenase  57.23 
 
 
635 aa  697    Pseudomonas putida KT2440  Bacteria  normal  decreased coverage  0.00914053 
 
 
-
 
NC_009512  Pput_3161  4-hydroxyphenylpyruvate dioxygenase  57.23 
 
 
635 aa  697    Pseudomonas putida F1  Bacteria  normal  0.706766  normal 
 
 
-
 
NC_009656  PSPA7_0327  hypothetical protein  56.98 
 
 
634 aa  679    Pseudomonas aeruginosa PA7  Bacteria  normal  0.627098  n/a   
 
 
-
 
NC_004578  PSPTO_2346  4-hydroxyphenylpyruvate dioxygenase, putative  56.51 
 
 
635 aa  699    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2130  4-hydroxyphenylpyruvate dioxygenase  56.65 
 
 
635 aa  703    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0402618  normal  0.678263 
 
 
-
 
NC_007492  Pfl01_4905  4-hydroxyphenylpyruvate dioxygenase  55.78 
 
 
633 aa  680    Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B0343  4-hydroxyphenylpyruvate dioxygenase  96.19 
 
 
630 aa  1207    Burkholderia sp. 383  Bacteria  normal  normal  0.880013 
 
 
-
 
NC_010622  Bphy_1081  4-hydroxyphenylpyruvate dioxygenase  68.99 
 
 
628 aa  848    Burkholderia phymatum STM815  Bacteria  normal  0.796659  normal  0.416218 
 
 
-
 
NC_007650  BTH_II2059  4-hydroxyphenylpyruvate dioxygenase, putative  78.57 
 
 
687 aa  1027    Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_4963  4-hydroxyphenylpyruvate dioxygenase  95.87 
 
 
630 aa  1182    Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.0115166 
 
 
-
 
NC_010086  Bmul_3418  4-hydroxyphenylpyruvate dioxygenase  95.08 
 
 
630 aa  1172    Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0242311  normal  0.14685 
 
 
-
 
NC_007952  Bxe_B0882  4-hydroxyphenylpyruvate dioxygenase  75.36 
 
 
627 aa  926    Burkholderia xenovorans LB400  Bacteria  normal  normal  0.923988 
 
 
-
 
NC_010676  Bphyt_4567  Xylose isomerase domain protein TIM barrel  76.83 
 
 
627 aa  957    Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_3062  4-hydroxyphenylpyruvate dioxygenase  96.03 
 
 
630 aa  1185    Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_3362  4-hydroxyphenylpyruvate dioxygenase  57.71 
 
 
635 aa  700    Pseudomonas putida GB-1  Bacteria  normal  0.283519  normal  0.789434 
 
 
-
 
NC_008391  Bamb_4666  4-hydroxyphenylpyruvate dioxygenase  99.37 
 
 
630 aa  1256    Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.735725 
 
 
-
 
NC_008463  PA14_03000  hypothetical protein  57.78 
 
 
634 aa  684    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.00135939 
 
 
-
 
NC_010501  PputW619_2225  4-hydroxyphenylpyruvate dioxygenase  57.69 
 
 
635 aa  712    Pseudomonas putida W619  Bacteria  normal  0.44574  normal 
 
 
-
 
NC_010552  BamMC406_5194  4-hydroxyphenylpyruvate dioxygenase  100 
 
 
630 aa  1264    Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_5305  4-hydroxyphenylpyruvate dioxygenase  96.03 
 
 
630 aa  1185    Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.114512 
 
 
-
 
NC_012560  Avin_38100  4-hydroxyphenylpyruvate dioxygenase  58 
 
 
632 aa  694    Azotobacter vinelandii DJ  Bacteria  normal  0.749235  n/a   
 
 
-
 
NC_007948  Bpro_4496  4-hydroxyphenylpyruvate dioxygenase  51.27 
 
 
638 aa  620  1e-176  Polaromonas sp. JS666  Bacteria  normal  normal  0.460677 
 
 
-
 
NC_010524  Lcho_0418  xylose isomerase domain-containing protein  50.95 
 
 
635 aa  594  1e-168  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008781  Pnap_1560  4-hydroxyphenylpyruvate dioxygenase  50.79 
 
 
632 aa  593  1e-168  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.288895  normal 
 
 
-
 
NC_006349  BMAA0848  putative 4-hydroxyphenylpyruvate dioxygenase  88.1 
 
 
684 aa  588  1e-167  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_2205  putative 4-hydroxyphenylpyruvate dioxygenase  88.1 
 
 
684 aa  588  1e-167  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0481  AP endonuclease  88.1 
 
 
684 aa  588  1e-167  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1752  putative 4-hydroxyphenylpyruvate dioxygenase  88.1 
 
 
684 aa  588  1e-167  Burkholderia mallei SAVP1  Bacteria  normal  0.10433  n/a   
 
 
-
 
NC_009079  BMA10247_A0891  AP endonuclease  88.1 
 
 
684 aa  588  1e-167  Burkholderia mallei NCTC 10247  Bacteria  normal  0.940921  n/a   
 
 
-
 
NC_012791  Vapar_3320  4-hydroxyphenylpyruvate dioxygenase  50.08 
 
 
630 aa  588  1e-166  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1894  putative amino acid dioxygenase  87.8 
 
 
684 aa  587  1e-166  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A0577  4-hydroxyphenylpyruvate dioxygenase  88.1 
 
 
687 aa  588  1e-166  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B5035  4-hydroxyphenylpyruvate dioxygenase  50.32 
 
 
632 aa  575  1.0000000000000001e-162  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010678  Rpic_4305  4-hydroxyphenylpyruvate dioxygenase  50.32 
 
 
628 aa  566  1e-160  Ralstonia pickettii 12J  Bacteria  normal  0.92924  normal 
 
 
-
 
NC_012857  Rpic12D_4415  4-hydroxyphenylpyruvate dioxygenase  50.32 
 
 
628 aa  566  1e-160  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_0292  4-hydroxyphenylpyruvate dioxygenase  47.78 
 
 
615 aa  551  1e-155  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RS02058  hypothetical protein  48.21 
 
 
626 aa  536  1e-151  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0224521  normal  0.842888 
 
 
-
 
NC_013946  Mrub_0606  4-hydroxyphenylpyruvate dioxygenase  44.92 
 
 
624 aa  524  1e-147  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.0633938 
 
 
-
 
NC_011894  Mnod_0122  Xylose isomerase domain protein TIM barrel  45.64 
 
 
627 aa  495  1e-139  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.134725  n/a   
 
 
-
 
NC_009485  BBta_6113  4-hydroxyphenylpyruvate dioxygenase  45.12 
 
 
623 aa  480  1e-134  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.471766 
 
 
-
 
NC_009620  Smed_4204  xylose isomerase domain-containing protein  43.11 
 
 
629 aa  475  1e-133  Sinorhizobium medicae WSM419  Bacteria  normal  0.460434  normal 
 
 
-
 
NC_010511  M446_4755  4-hydroxyphenylpyruvate dioxygenase  44.92 
 
 
637 aa  477  1e-133  Methylobacterium sp. 4-46  Bacteria  normal  0.304127  normal 
 
 
-
 
NC_012858  Rleg_7092  4-hydroxyphenylpyruvate dioxygenase  42.72 
 
 
631 aa  476  1e-133  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.26168  normal 
 
 
-
 
NC_009668  Oant_4428  4-hydroxyphenylpyruvate dioxygenase  44.18 
 
 
633 aa  476  1e-133  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3913  xylose isomerase domain-containing protein  41.77 
 
 
617 aa  471  1.0000000000000001e-131  Marinomonas sp. MWYL1  Bacteria  normal  0.974395  normal 
 
 
-
 
NC_011366  Rleg2_5952  4-hydroxyphenylpyruvate dioxygenase  42.56 
 
 
631 aa  467  9.999999999999999e-131  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0955687  decreased coverage  0.00791612 
 
 
-
 
NC_011988  Avi_5449  4-hydroxyphenylpyruvate dioxygenase  42.83 
 
 
615 aa  460  9.999999999999999e-129  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_0782  4-hydroxyphenylpyruvate dioxygenase  42.74 
 
 
630 aa  459  9.999999999999999e-129  Chelativorans sp. BNC1  Bacteria  normal  0.817905  n/a   
 
 
-
 
NC_011886  Achl_3855  Xylose isomerase domain protein TIM barrel  44.01 
 
 
624 aa  459  9.999999999999999e-129  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008541  Arth_4079  xylose isomerase domain-containing protein  44.23 
 
 
629 aa  457  1e-127  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_1586  4-hydroxyphenylpyruvate dioxygenase  43.81 
 
 
621 aa  455  1.0000000000000001e-126  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.435654  n/a   
 
 
-
 
NC_013235  Namu_4090  Xylose isomerase domain protein TIM barrel  44.93 
 
 
645 aa  448  1.0000000000000001e-124  Nakamurella multipartita DSM 44233  Bacteria  normal  hitchhiker  0.00816269 
 
 
-
 
NC_013947  Snas_5095  Xylose isomerase domain-containing protein TIM barrel  43.74 
 
 
604 aa  443  1e-123  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.0443788 
 
 
-
 
NC_008010  Dgeo_2375  xylose isomerase-like TIM barrel  48.16 
 
 
477 aa  415  1e-114  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_1477  Xylose isomerase domain protein TIM barrel  43.7 
 
 
596 aa  397  1e-109  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0230944  normal  0.313669 
 
 
-
 
NC_007484  Noc_1437  4-hydroxyphenylpyruvate dioxygenase  36.23 
 
 
351 aa  197  4.0000000000000005e-49  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3553  4-hydroxyphenylpyruvate dioxygenase  33.73 
 
 
363 aa  167  5e-40  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.225452  n/a   
 
 
-
 
NC_007005  Psyr_3330  4-hydroxyphenylpyruvate dioxygenase  33.43 
 
 
358 aa  166  8e-40  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  decreased coverage  0.000135901 
 
 
-
 
NC_007492  Pfl01_2917  4-hydroxyphenylpyruvate dioxygenase  32.93 
 
 
358 aa  166  1.0000000000000001e-39  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.433802  normal  0.723827 
 
 
-
 
NC_006369  lpl2204  4-hydroxyphenylpyruvate dioxygenase (legiolysin)  32.72 
 
 
348 aa  164  3e-39  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007948  Bpro_4213  4-hydroxyphenylpyruvate dioxygenase  32.56 
 
 
376 aa  164  6e-39  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_006368  lpp2232  4-hydroxyphenylpyruvate dioxygenase (legiolysin)  32.72 
 
 
348 aa  163  7e-39  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_012791  Vapar_4766  4-hydroxyphenylpyruvate dioxygenase  31.36 
 
 
375 aa  161  3e-38  Variovorax paradoxus S110  Bacteria  normal  0.578295  n/a   
 
 
-
 
NC_011138  MADE_02541  4-hydroxyphenylpyruvate dioxygenase  30.49 
 
 
357 aa  159  1e-37  Alteromonas macleodii 'Deep ecotype'  Bacteria  unclonable  0.0000129405  n/a   
 
 
-
 
NC_012560  Avin_34750  4-hydroxyphenylpyruvate dioxygenase  33.92 
 
 
359 aa  159  1e-37  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc3103  4-hydroxyphenylpyruvate dioxygenase oxidoreductase protein  31.27 
 
 
367 aa  159  2e-37  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_2440  4-hydroxyphenylpyruvate dioxygenase  31.23 
 
 
358 aa  158  2e-37  Pseudomonas putida W619  Bacteria  normal  0.807767  normal 
 
 
-
 
NC_010508  Bcenmc03_0301  4-hydroxyphenylpyruvate dioxygenase  32.84 
 
 
365 aa  158  4e-37  Burkholderia cenocepacia MC0-3  Bacteria  normal  hitchhiker  0.000140026 
 
 
-
 
NC_008060  Bcen_2785  4-hydroxyphenylpyruvate dioxygenase  32.84 
 
 
365 aa  158  4e-37  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0321  4-hydroxyphenylpyruvate dioxygenase  32.84 
 
 
365 aa  158  4e-37  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_3433  4-hydroxyphenylpyruvate dioxygenase  31.53 
 
 
358 aa  157  5.0000000000000005e-37  Pseudomonas putida KT2440  Bacteria  normal  0.954221  normal  0.970213 
 
 
-
 
NC_010322  PputGB1_2502  4-hydroxyphenylpyruvate dioxygenase  31.53 
 
 
358 aa  157  5.0000000000000005e-37  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_0240  4-hydroxyphenylpyruvate dioxygenase  32.84 
 
 
365 aa  157  5.0000000000000005e-37  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_2329  4-hydroxyphenylpyruvate dioxygenase  31.53 
 
 
358 aa  157  6e-37  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A0346  4-hydroxyphenylpyruvate dioxygenase  33.33 
 
 
370 aa  156  9e-37  Methylibium petroleiphilum PM1  Bacteria  normal  0.152583  normal 
 
 
-
 
NC_007651  BTH_I3106  4-hydroxyphenylpyruvate dioxygenase  33.43 
 
 
365 aa  156  9e-37  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A0286  4-hydroxyphenylpyruvate dioxygenase  32.93 
 
 
365 aa  156  1e-36  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.408126 
 
 
-
 
NC_010551  BamMC406_0248  4-hydroxyphenylpyruvate dioxygenase  32.84 
 
 
365 aa  156  1e-36  Burkholderia ambifaria MC40-6  Bacteria  normal  hitchhiker  0.000564922 
 
 
-
 
NC_007510  Bcep18194_A3420  4-hydroxyphenylpyruvate dioxygenase  32.55 
 
 
365 aa  155  2e-36  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_0223  4-hydroxyphenylpyruvate dioxygenase  32.55 
 
 
365 aa  155  2e-36  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.376735  hitchhiker  0.0000014808 
 
 
-
 
NC_008786  Veis_2137  4-hydroxyphenylpyruvate dioxygenase  32.85 
 
 
377 aa  155  2.9999999999999998e-36  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.658248 
 
 
-
 
NC_008781  Pnap_1120  4-hydroxyphenylpyruvate dioxygenase  30.63 
 
 
360 aa  155  2.9999999999999998e-36  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_4191  4-hydroxyphenylpyruvate dioxygenase  32.15 
 
 
378 aa  154  5e-36  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A0960  4-hydroxyphenylpyruvate dioxygenase  30.79 
 
 
369 aa  154  5.9999999999999996e-36  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_3671  4-hydroxyphenylpyruvate dioxygenase  32.04 
 
 
365 aa  154  5.9999999999999996e-36  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0292973  hitchhiker  0.0000000943483 
 
 
-
 
NC_009654  Mmwyl1_2737  4-hydroxyphenylpyruvate dioxygenase  31.4 
 
 
358 aa  152  1e-35  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_3865  4-hydroxyphenylpyruvate dioxygenase  32.82 
 
 
367 aa  152  1e-35  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_2866  4-hydroxyphenylpyruvate dioxygenase  32.56 
 
 
365 aa  152  1e-35  Burkholderia phymatum STM815  Bacteria  normal  hitchhiker  0.0000187167 
 
 
-
 
NC_009783  VIBHAR_02177  4-hydroxyphenylpyruvate dioxygenase  30.03 
 
 
357 aa  153  1e-35  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007974  Rmet_4925  4-hydroxyphenylpyruvate dioxygenase oxidoreductase protein  30.03 
 
 
357 aa  152  1e-35  Cupriavidus metallidurans CH34  Bacteria  normal  0.757451  normal  0.0949883 
 
 
-
 
NC_008463  PA14_53070  4-hydroxyphenylpyruvate dioxygenase  33.03 
 
 
357 aa  152  1e-35  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_3388  4-hydroxyphenylpyruvate dioxygenase  30.68 
 
 
368 aa  152  2e-35  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_2997  4-hydroxyphenylpyruvate dioxygenase  32.33 
 
 
360 aa  152  2e-35  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.171273  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0003  4-hydroxyphenylpyruvate dioxygenase  32.45 
 
 
365 aa  152  3e-35  Burkholderia mallei SAVP1  Bacteria  normal  0.809  n/a   
 
 
-
 
NC_006348  BMA2582  4-hydroxyphenylpyruvate dioxygenase  32.45 
 
 
365 aa  152  3e-35  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B4501  4-hydroxyphenylpyruvate dioxygenase  30.33 
 
 
359 aa  152  3e-35  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1975  4-hydroxyphenylpyruvate dioxygenase  32.45 
 
 
365 aa  152  3e-35  Burkholderia mallei NCTC 10229  Bacteria  normal  0.673327  n/a   
 
 
-
 
NC_009080  BMA10247_3528  4-hydroxyphenylpyruvate dioxygenase  32.45 
 
 
365 aa  152  3e-35  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3845  4-hydroxyphenylpyruvate dioxygenase  32.45 
 
 
365 aa  152  3e-35  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3120  4-hydroxyphenylpyruvate dioxygenase  32.45 
 
 
365 aa  152  3e-35  Burkholderia mallei SAVP1  Bacteria  normal  0.379899  n/a   
 
 
-
 
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