More than 300 homologs were found in PanDaTox collection
for query gene BamMC406_4407 on replicon NC_010552
Organism: Burkholderia ambifaria MC40-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010552  BamMC406_4407  AraC family transcriptional regulator  100 
 
 
313 aa  622  1e-177  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.332097 
 
 
-
 
NC_008391  Bamb_3944  AraC family transcriptional regulator  99.04 
 
 
313 aa  617  1e-176  Burkholderia ambifaria AMMD  Bacteria  normal  0.313213  normal 
 
 
-
 
NC_007511  Bcep18194_B1337  AraC family transcriptional regulator  97.12 
 
 
600 aa  590  1e-168  Burkholderia sp. 383  Bacteria  normal  normal  0.477585 
 
 
-
 
NC_008061  Bcen_3855  AraC family transcriptional regulator  98.68 
 
 
313 aa  577  1e-164  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_5791  AraC family transcriptional regulator  98.68 
 
 
313 aa  577  1e-164  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_4513  AraC family transcriptional regulator  98.68 
 
 
313 aa  577  1e-164  Burkholderia cenocepacia HI2424  Bacteria  normal  0.24786  normal 
 
 
-
 
NC_010086  Bmul_4141  AraC family transcriptional regulator  96.42 
 
 
307 aa  570  1e-161  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.0368552 
 
 
-
 
NC_007650  BTH_II1388  AraC family transcriptional regulator  84.72 
 
 
336 aa  508  1e-143  Burkholderia thailandensis E264  Bacteria  hitchhiker  0.00534804  n/a   
 
 
-
 
NC_006349  BMAA1189  AraC family transcriptional regulator  83.01 
 
 
550 aa  503  1e-141  Burkholderia mallei ATCC 23344  Bacteria  normal  0.459992  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0013  AraC family transcriptional regulator  83.01 
 
 
485 aa  501  1e-141  Burkholderia pseudomallei 1710b  Bacteria  normal  0.344073  n/a   
 
 
-
 
NC_009079  BMA10247_A1151  AraC family transcriptional regulator  83.01 
 
 
342 aa  501  1e-141  Burkholderia mallei NCTC 10247  Bacteria  normal  0.0648007  n/a   
 
 
-
 
NC_008784  BMASAVP1_0149  AraC family transcriptional regulator  84.07 
 
 
331 aa  488  1e-137  Burkholderia mallei SAVP1  Bacteria  normal  0.511163  n/a   
 
 
-
 
NC_008835  BMA10229_0427  AraC family transcriptional regulator  84.07 
 
 
331 aa  488  1e-137  Burkholderia mallei NCTC 10229  Bacteria  normal  0.459699  n/a   
 
 
-
 
NC_009075  BURPS668_A1497  AraC family transcription regulator  84.07 
 
 
337 aa  487  1e-136  Burkholderia pseudomallei 668  Bacteria  normal  0.141505  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1411  AraC family transcriptional regulator  84.07 
 
 
337 aa  487  1e-136  Burkholderia pseudomallei 1106a  Bacteria  normal  0.439169  n/a   
 
 
-
 
NC_007948  Bpro_1731  AraC family transcriptional regulator  54.48 
 
 
302 aa  314  9.999999999999999e-85  Polaromonas sp. JS666  Bacteria  normal  normal  0.533642 
 
 
-
 
NC_007492  Pfl01_2237  AraC family transcriptional regulator  52.33 
 
 
310 aa  311  9e-84  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_4009  helix-turn-helix domain-containing protein  51.53 
 
 
309 aa  289  3e-77  Pseudomonas putida F1  Bacteria  normal  0.125602  normal  0.35131 
 
 
-
 
NC_008752  Aave_0591  AraC family transcriptional regulator  53.05 
 
 
321 aa  289  5.0000000000000004e-77  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_1711  AraC family transcriptional regulator  51.53 
 
 
309 aa  287  2e-76  Pseudomonas putida KT2440  Bacteria  normal  0.311162  normal  0.0412412 
 
 
-
 
NC_012791  Vapar_3550  transcriptional regulator, AraC family  49.13 
 
 
313 aa  262  4.999999999999999e-69  Variovorax paradoxus S110  Bacteria  normal  0.682713  n/a   
 
 
-
 
NC_010320  Teth514_0399  response regulator receiver protein  26.71 
 
 
365 aa  84  0.000000000000003  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1958  response regulator receiver protein  34.86 
 
 
530 aa  83.2  0.000000000000005  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000471781  n/a   
 
 
-
 
NC_011899  Hore_19910  response regulator receiver protein  31.82 
 
 
386 aa  81.3  0.00000000000002  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_2253  two component AraC family transcriptional regulator  31.45 
 
 
532 aa  80.1  0.00000000000004  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_5348  transcriptional regulator, AraC family  25.87 
 
 
291 aa  80.1  0.00000000000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.650952  normal  0.226075 
 
 
-
 
NC_013411  GYMC61_2158  two component transcriptional regulator, AraC family  38.66 
 
 
493 aa  79.7  0.00000000000006  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012793  GWCH70_1280  two component transcriptional regulator, AraC family  35.71 
 
 
492 aa  78.6  0.0000000000001  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_1205  AraC family transcriptional regulator  35 
 
 
440 aa  79  0.0000000000001  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.909691  normal 
 
 
-
 
NC_010001  Cphy_1583  two component AraC family transcriptional regulator  28.69 
 
 
533 aa  79  0.0000000000001  Clostridium phytofermentans ISDg  Bacteria  normal  0.160886  n/a   
 
 
-
 
NC_007643  Rru_A0919  two component AraC family transcriptional regulator  35.54 
 
 
356 aa  77.8  0.0000000000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0600  two component transcriptional regulator, AraC family  29.41 
 
 
546 aa  78.2  0.0000000000002  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0937  transcriptional regulator, AraC family  32.08 
 
 
291 aa  77.8  0.0000000000002  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.440102  n/a   
 
 
-
 
NC_011094  SeSA_A2206  regulatory protein PocR  34.29 
 
 
303 aa  76.6  0.0000000000005  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.742166  normal 
 
 
-
 
NC_013421  Pecwa_4087  two component transcriptional regulator, AraC family  34.29 
 
 
350 aa  76.6  0.0000000000005  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_2277  regulatory protein PocR  37.27 
 
 
304 aa  76.6  0.0000000000005  Escherichia coli E24377A  Bacteria  hitchhiker  0.000774305  n/a   
 
 
-
 
NC_011729  PCC7424_2267  two component transcriptional regulator, AraC family  35.29 
 
 
265 aa  76.3  0.0000000000007  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00808217 
 
 
-
 
NC_011080  SNSL254_A2213  regulatory protein PocR  38.38 
 
 
303 aa  75.1  0.000000000001  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.639643  normal 
 
 
-
 
NC_011205  SeD_A2372  regulatory protein PocR  38.38 
 
 
303 aa  75.1  0.000000000001  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.740068  normal 
 
 
-
 
NC_011083  SeHA_C2259  regulatory protein PocR  38.38 
 
 
303 aa  75.1  0.000000000001  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.746184  normal  0.221956 
 
 
-
 
NC_011149  SeAg_B2159  regulatory protein PocR  38.38 
 
 
303 aa  75.1  0.000000000001  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.385139  n/a   
 
 
-
 
NC_009513  Lreu_1750  AraC family transcriptional regulator  30.36 
 
 
359 aa  75.5  0.000000000001  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3697  two component AraC family transcriptional regulator  36.36 
 
 
517 aa  75.5  0.000000000001  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0000611836  n/a   
 
 
-
 
NC_013456  VEA_002640  transcriptional regulator AraC family  35.59 
 
 
241 aa  74.3  0.000000000002  Vibrio sp. Ex25  Bacteria  normal  0.632133  n/a   
 
 
-
 
NC_013172  Bfae_29140  response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain  46.88 
 
 
279 aa  73.9  0.000000000003  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0102  two component transcriptional regulator, AraC family  29.31 
 
 
519 aa  73.2  0.000000000006  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_3305  two component transcriptional regulator, AraC family  43.53 
 
 
513 aa  72.8  0.000000000007  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010571  Oter_3657  AraC family transcriptional regulator  42.71 
 
 
430 aa  72.8  0.000000000008  Opitutus terrae PB90-1  Bacteria  normal  0.316455  normal 
 
 
-
 
NC_010184  BcerKBAB4_2786  AraC family transcriptional regulator  33.33 
 
 
411 aa  72.4  0.000000000008  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.173826  n/a   
 
 
-
 
NC_010001  Cphy_3256  AraC family transcriptional regulator  25.29 
 
 
292 aa  71.6  0.00000000001  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_2642  transcriptional regulator, AraC family  22.54 
 
 
304 aa  72  0.00000000001  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_2113  two component AraC family transcriptional regulator  34.45 
 
 
548 aa  71.2  0.00000000002  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_2332  DNA-binding transcriptional regulator AraC  39.45 
 
 
310 aa  70.9  0.00000000003  Pectobacterium wasabiae WPP163  Bacteria  normal  0.0890796  n/a   
 
 
-
 
NC_007954  Sden_3152  sigma-54 factor, interaction region  30.77 
 
 
440 aa  70.9  0.00000000003  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0496  two component AraC family transcriptional regulator  25.87 
 
 
543 aa  70.5  0.00000000004  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_1172  AraC family DNA-binding response regulator  33.67 
 
 
250 aa  70.1  0.00000000004  Clostridium perfringens ATCC 13124  Bacteria  normal  0.409048  n/a   
 
 
-
 
NC_011368  Rleg2_4428  transcriptional regulator, AraC family  27.46 
 
 
291 aa  70.1  0.00000000004  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010816  BLD_1536  putative AraC family DNA-binding protein  41.38 
 
 
310 aa  70.1  0.00000000004  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_3197  DNA-binding transcriptional regulator AraC  38.53 
 
 
325 aa  69.7  0.00000000005  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0504834 
 
 
-
 
NC_011830  Dhaf_4320  transcriptional regulator, AraC family  37.65 
 
 
427 aa  69.7  0.00000000006  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2032  DNA-binding transcriptional regulator AraC  38.53 
 
 
310 aa  69.7  0.00000000006  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.527693  n/a   
 
 
-
 
NC_011899  Hore_15370  helix-turn-helix- domain containing protein AraC type  30.1 
 
 
415 aa  69.7  0.00000000006  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_1179  two component AraC family transcriptional regulator  35.05 
 
 
359 aa  69.3  0.00000000008  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_0224  response regulator receiver protein  29.7 
 
 
537 aa  69.3  0.00000000008  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_4762  transcriptional regulator, AraC family  25.84 
 
 
311 aa  68.9  0.00000000009  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.0640871  normal  0.0124247 
 
 
-
 
NC_005957  BT9727_2894  AraC family transcriptional regulator  26.72 
 
 
409 aa  68.6  0.0000000001  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  0.00223441  n/a   
 
 
-
 
NC_008261  CPF_2344  AraC family DNA-binding response regulator  28.71 
 
 
507 aa  68.6  0.0000000001  Clostridium perfringens ATCC 13124  Bacteria  normal  0.627636  n/a   
 
 
-
 
NC_011898  Ccel_1982  two component transcriptional regulator, AraC family  34.86 
 
 
544 aa  68.6  0.0000000001  Clostridium cellulolyticum H10  Bacteria  normal  0.184696  n/a   
 
 
-
 
NC_009380  Strop_0182  helix-turn-helix domain-containing protein  41.18 
 
 
326 aa  68.9  0.0000000001  Salinispora tropica CNB-440  Bacteria  normal  0.0556726  normal 
 
 
-
 
NC_010001  Cphy_1722  two component AraC family transcriptional regulator  32 
 
 
508 aa  68.6  0.0000000001  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_3148  transcriptional regulator, AraC family  26.72 
 
 
409 aa  68.6  0.0000000001  Bacillus cereus AH820  Bacteria  n/a    normal  0.322003 
 
 
-
 
NC_012793  GWCH70_3156  two component transcriptional regulator, AraC family  31.3 
 
 
515 aa  68.9  0.0000000001  Geobacillus sp. WCH70  Bacteria  normal  0.949308  n/a   
 
 
-
 
NC_013132  Cpin_5975  transcriptional regulator, AraC family  22.55 
 
 
299 aa  68.2  0.0000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_006274  BCZK4578  AraC family transcriptional regulator  28 
 
 
409 aa  68.2  0.0000000002  Bacillus cereus E33L  Bacteria  normal  0.0591899  n/a   
 
 
-
 
NC_007413  Ava_1138  AraC family transcriptional regulator  35.35 
 
 
276 aa  68.2  0.0000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.283837  normal  0.0213707 
 
 
-
 
NC_007413  Ava_4740  AraC family transcriptional regulator  38.55 
 
 
277 aa  68.2  0.0000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.287591  normal  0.0863508 
 
 
-
 
NC_007413  Ava_4889  two component AraC family transcriptional regulator  35.24 
 
 
288 aa  68.2  0.0000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.298891  hitchhiker  0.00503781 
 
 
-
 
NC_011898  Ccel_1228  two component transcriptional regulator, AraC family  26.89 
 
 
532 aa  68.2  0.0000000002  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0853  two component transcriptional regulator, AraC family  24.34 
 
 
509 aa  67.8  0.0000000002  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_5518  response regulator receiver protein  41.18 
 
 
284 aa  67.8  0.0000000002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.484795  normal  0.95745 
 
 
-
 
NC_011071  Smal_2105  putative sigma54 specific transcriptional regulator  40.95 
 
 
497 aa  67.8  0.0000000002  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.619214  normal  0.0553697 
 
 
-
 
NC_012880  Dd703_1909  DNA-binding transcriptional regulator AraC  39.39 
 
 
314 aa  67.4  0.0000000003  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_5590  AraC family transcriptional regulator  34.96 
 
 
310 aa  67.4  0.0000000003  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.651891 
 
 
-
 
NC_013132  Cpin_1518  transcriptional regulator, AraC family  25.78 
 
 
288 aa  67.8  0.0000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_4591  two component transcriptional regulator, AraC family  35.58 
 
 
265 aa  67.4  0.0000000003  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_1003  DNA-binding response regulator  32.65 
 
 
250 aa  67.4  0.0000000003  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013203  Apar_0838  transcriptional regulator, AraC family  30.19 
 
 
273 aa  67.4  0.0000000003  Atopobium parvulum DSM 20469  Bacteria  normal  hitchhiker  0.00346138 
 
 
-
 
NC_011725  BCB4264_A3127  transcriptional regulator, AraC family  26.72 
 
 
409 aa  67  0.0000000003  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2054  two component transcriptional regulator, AraC family  37.25 
 
 
1201 aa  67.4  0.0000000003  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.695732  normal 
 
 
-
 
NC_013730  Slin_6236  transcriptional regulator, AraC family  33.93 
 
 
307 aa  66.6  0.0000000004  Spirosoma linguale DSM 74  Bacteria  normal  0.573894  normal 
 
 
-
 
NC_011898  Ccel_0944  two component transcriptional regulator, AraC family  29.81 
 
 
539 aa  67  0.0000000004  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_2146  DNA-binding transcriptional regulator AraC  38.78 
 
 
316 aa  67  0.0000000004  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0219  helix-turn-helix domain-containing protein  34.91 
 
 
293 aa  67  0.0000000004  Shewanella putrefaciens CN-32  Bacteria  normal  0.882333  n/a   
 
 
-
 
NC_010658  SbBS512_E0056  DNA-binding transcriptional regulator AraC  35.11 
 
 
292 aa  66.6  0.0000000004  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010180  BcerKBAB4_5603  AraC family transcriptional regulator  27.59 
 
 
409 aa  67  0.0000000004  Bacillus weihenstephanensis KBAB4  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_2466  AraC family transcriptional regulator  27.03 
 
 
315 aa  66.6  0.0000000005  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_1698  AraC family transcriptional regulator  30.93 
 
 
686 aa  66.6  0.0000000005  Clostridium perfringens ATCC 13124  Bacteria  decreased coverage  0.000348751  n/a   
 
 
-
 
NC_008262  CPR_1432  AraC family transcriptional regulator  30.93 
 
 
686 aa  66.6  0.0000000005  Clostridium perfringens SM101  Bacteria  hitchhiker  0.00438113  n/a   
 
 
-
 
NC_008262  CPR_2056  AraC family DNA-binding response regulator  28.71 
 
 
507 aa  66.6  0.0000000005  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_0071  transcriptional regulator, AraC family  28.79 
 
 
308 aa  66.6  0.0000000005  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.462194  normal  0.509071 
 
 
-
 
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