More than 300 homologs were found in PanDaTox collection
for query gene BamMC406_3149 on replicon NC_010552
Organism: Burkholderia ambifaria MC40-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010552  BamMC406_3149  Crp/FNR family transcriptional regulator  100 
 
 
249 aa  510  1e-144  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_5008  Crp/FNR family transcriptional regulator  98.8 
 
 
249 aa  504  9.999999999999999e-143  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B3138  Crp/FNR family transcriptional regulator  95.18 
 
 
248 aa  481  1e-135  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_4486  Crp/FNR family transcriptional regulator  94.78 
 
 
248 aa  479  1e-134  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_5737  Crp/FNR family transcriptional regulator  94.78 
 
 
248 aa  478  1e-134  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.188641 
 
 
-
 
NC_008061  Bcen_5122  Crp/FNR family transcriptional regulator  94.78 
 
 
248 aa  478  1e-134  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_5297  Crp/FNR family transcriptional regulator  92.77 
 
 
248 aa  472  1e-132  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007435  BURPS1710b_A1540  Crp/FNR family transcriptional regulator  91.74 
 
 
630 aa  446  1.0000000000000001e-124  Burkholderia pseudomallei 1710b  Bacteria  normal  0.18142  n/a   
 
 
-
 
NC_009075  BURPS668_A0051  cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases  90.99 
 
 
251 aa  445  1.0000000000000001e-124  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0037  Crp/FNR family transcriptional regulator  90.99 
 
 
251 aa  445  1.0000000000000001e-124  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0031  Crp/FNR family transcriptional regulator  90.56 
 
 
251 aa  443  1e-123  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0037  Crp/FNR family transcriptional regulator  90.56 
 
 
251 aa  443  1e-123  Burkholderia mallei NCTC 10247  Bacteria  normal  0.284481  n/a   
 
 
-
 
NC_008835  BMA10229_1464  Crp/FNR family transcriptional regulator  90.56 
 
 
251 aa  443  1e-123  Burkholderia mallei NCTC 10229  Bacteria  normal  0.855917  n/a   
 
 
-
 
NC_007650  BTH_II0035  Crp/FNR family transcriptional regulator  90.56 
 
 
251 aa  442  1e-123  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1184  Crp/FNR family transcriptional regulator  90.56 
 
 
251 aa  443  1e-123  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B0606  Crp/FNR family transcriptional regulator  70.64 
 
 
267 aa  347  1e-94  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.149995 
 
 
-
 
NC_010676  Bphyt_4272  transcriptional regulator, Crp/Fnr family  72.94 
 
 
218 aa  337  9.999999999999999e-92  Burkholderia phytofirmans PsJN  Bacteria  normal  0.71016  normal  0.563993 
 
 
-
 
NC_010623  Bphy_4433  Crp/FNR family transcriptional regulator  72.48 
 
 
224 aa  329  3e-89  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009075  BURPS668_A1636  Crp/FNR family transcriptional regulator  55.82 
 
 
259 aa  285  4e-76  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0129  Crp/FNR family transcriptional regulator  55.42 
 
 
259 aa  282  3.0000000000000004e-75  Burkholderia pseudomallei 1710b  Bacteria  normal  0.300797  n/a   
 
 
-
 
NC_007650  BTH_II0460  Crp/FNR family transcriptional regulator  59.29 
 
 
260 aa  282  3.0000000000000004e-75  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1554  Crp/FNR family transcriptional regulator  55.42 
 
 
259 aa  282  3.0000000000000004e-75  Burkholderia pseudomallei 1106a  Bacteria  normal  0.796955  n/a   
 
 
-
 
NC_010552  BamMC406_4280  Crp/FNR family transcriptional regulator  53.01 
 
 
257 aa  281  7.000000000000001e-75  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.0900166 
 
 
-
 
NC_008391  Bamb_3812  Crp/FNR family transcriptional regulator  53.01 
 
 
257 aa  281  7.000000000000001e-75  Burkholderia ambifaria AMMD  Bacteria  normal  0.279241  normal  0.577974 
 
 
-
 
NC_006349  BMAA0164  Crp/FNR family transcriptional regulator  56.56 
 
 
260 aa  281  1e-74  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1016  Crp/FNR family transcriptional regulator  56.56 
 
 
260 aa  281  1e-74  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2604  Crp/Fnr family transcriptional regulator  56.56 
 
 
260 aa  281  1e-74  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A2747  Crp/Fnr family transcriptional regulator  56.56 
 
 
260 aa  281  1e-74  Burkholderia pseudomallei 668  Bacteria  normal  0.225266  n/a   
 
 
-
 
NC_009079  BMA10247_A0190  Crp/FNR family transcriptional regulator  58.85 
 
 
242 aa  280  1e-74  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1334  Crp/FNR family transcriptional regulator  58.85 
 
 
242 aa  280  1e-74  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II1244  Crp/FNR family transcriptional regulator  55.69 
 
 
261 aa  279  3e-74  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010087  Bmul_5904  Crp/FNR family transcriptional regulator  53.06 
 
 
257 aa  277  1e-73  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.379633  normal  0.222249 
 
 
-
 
NC_010676  Bphyt_6315  transcriptional regulator, Crp/Fnr family  52.4 
 
 
403 aa  277  1e-73  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010557  BamMC406_6195  Crp/FNR family transcriptional regulator  51.81 
 
 
257 aa  277  1e-73  Burkholderia ambifaria MC40-6  Bacteria  normal  0.107166  normal  0.295507 
 
 
-
 
NC_010625  Bphy_5811  Crp/FNR family transcriptional regulator  54.58 
 
 
266 aa  273  2.0000000000000002e-72  Burkholderia phymatum STM815  Bacteria  normal  normal  0.118405 
 
 
-
 
NC_010622  Bphy_1138  Crp/FNR family transcriptional regulator  54.55 
 
 
260 aa  268  5e-71  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_4238  Crp/FNR family transcriptional regulator  52.02 
 
 
257 aa  266  2e-70  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0460631  normal 
 
 
-
 
NC_010086  Bmul_4265  Crp/FNR family transcriptional regulator  53.63 
 
 
259 aa  261  4.999999999999999e-69  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.367581  normal  0.892156 
 
 
-
 
NC_010515  Bcenmc03_5999  Crp/FNR family transcriptional regulator  51.82 
 
 
259 aa  261  6.999999999999999e-69  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.582695  normal 
 
 
-
 
NC_007511  Bcep18194_B1665  Crp/FNR family transcriptional regulator  51.82 
 
 
259 aa  261  8e-69  Burkholderia sp. 383  Bacteria  hitchhiker  0.00239618  normal  0.130389 
 
 
-
 
NC_007347  Reut_A1147  cyclic nucleotide-binding: regulatory protein, Crp  56.62 
 
 
261 aa  259  3e-68  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1217  cyclic nucleotide-binding: regulatory protein, Crp  56.62 
 
 
261 aa  259  3e-68  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4355  Crp/FNR family transcriptional regulator  51.84 
 
 
259 aa  259  3e-68  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0811079  normal 
 
 
-
 
NC_008061  Bcen_4012  Crp/FNR family transcriptional regulator  51.84 
 
 
259 aa  259  3e-68  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_3764  Crp/FNR family transcriptional regulator  51.46 
 
 
259 aa  254  1.0000000000000001e-66  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0549839 
 
 
-
 
NC_010524  Lcho_2772  Crp/FNR family transcriptional regulator  54.71 
 
 
245 aa  250  1e-65  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00275745 
 
 
-
 
NC_011662  Tmz1t_1288  transcriptional regulator, Crp/Fnr family  55 
 
 
246 aa  250  2e-65  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1047  cyclic nucleotide-binding: regulatory protein, Crp  52.73 
 
 
247 aa  243  1.9999999999999999e-63  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_2782  Crp/FNR family transcriptional regulator  52.02 
 
 
262 aa  242  3.9999999999999997e-63  Delftia acidovorans SPH-1  Bacteria  normal  0.0680307  normal  0.414614 
 
 
-
 
NC_007948  Bpro_1170  Crp/FNR family transcriptional regulator  52.79 
 
 
274 aa  241  7.999999999999999e-63  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_1007  transcriptional regulator, Crp/Fnr family  51.57 
 
 
242 aa  241  9e-63  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_1091  CRP/FNR family transcriptional regulator  51.57 
 
 
247 aa  241  9e-63  Acidovorax sp. JS42  Bacteria  normal  0.140321  normal 
 
 
-
 
NC_008752  Aave_1530  Crp/FNR family transcriptional regulator  50.87 
 
 
239 aa  239  2.9999999999999997e-62  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4294  Crp/FNR family transcriptional regulator  54.75 
 
 
272 aa  239  2.9999999999999997e-62  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A2471  transcription factor Fnr  55 
 
 
269 aa  236  2e-61  Methylibium petroleiphilum PM1  Bacteria  normal  0.366844  normal  0.0435693 
 
 
-
 
NC_007974  Rmet_4521  Crp/Fnr family transcriptional regulator  49.36 
 
 
257 aa  236  3e-61  Cupriavidus metallidurans CH34  Bacteria  normal  0.0161618  normal  0.0108643 
 
 
-
 
NC_008781  Pnap_3775  CRP/FNR family transcriptional regulator  50.91 
 
 
265 aa  235  6e-61  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_1163  CRP/FNR family transcriptional regulator  50.22 
 
 
251 aa  233  3e-60  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_0792  CRP/FNR family transcriptional regulator  51.36 
 
 
262 aa  225  6e-58  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.328451  normal 
 
 
-
 
NC_003295  RSc0190  transcription regulator protein  48.88 
 
 
266 aa  224  8e-58  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.180711 
 
 
-
 
NC_010678  Rpic_4428  transcriptional regulator, Crp/Fnr family  49.31 
 
 
263 aa  224  1e-57  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_4561  transcriptional regulator, Crp/Fnr family  49.31 
 
 
263 aa  224  1e-57  Ralstonia pickettii 12D  Bacteria  normal  normal  0.291712 
 
 
-
 
NC_011901  Tgr7_0212  putative transcriptional regulator, Crp/Fnr family  47.98 
 
 
254 aa  221  7e-57  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1207  Crp/FNR family transcriptional regulator  50.22 
 
 
264 aa  221  7e-57  Polaromonas sp. JS666  Bacteria  normal  0.494469  normal 
 
 
-
 
NC_007908  Rfer_1937  Crp/FNR family transcriptional regulator  49.77 
 
 
223 aa  220  1.9999999999999999e-56  Rhodoferax ferrireducens T118  Bacteria  normal  0.155753  n/a   
 
 
-
 
NC_010506  Swoo_2417  fumarate/nitrate reduction transcriptional regulator  44.59 
 
 
249 aa  219  5e-56  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0646393  decreased coverage  0.000000159166 
 
 
-
 
NC_009092  Shew_1993  fumarate/nitrate reduction transcriptional regulator  44.16 
 
 
249 aa  218  7e-56  Shewanella loihica PV-4  Bacteria  normal  0.238952  normal 
 
 
-
 
NC_008700  Sama_1799  fumarate/nitrate reduction transcriptional regulator  44.59 
 
 
250 aa  216  2e-55  Shewanella amazonensis SB2B  Bacteria  normal  0.417815  normal  0.180258 
 
 
-
 
NC_009654  Mmwyl1_2233  CRP/FNR family transcriptional regulator  43.91 
 
 
253 aa  216  4e-55  Marinomonas sp. MWYL1  Bacteria  normal  0.0375344  normal  0.791743 
 
 
-
 
NC_009831  Ssed_2219  fumarate/nitrate reduction transcriptional regulator  44.3 
 
 
249 aa  215  5.9999999999999996e-55  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_2037  Crp/FNR family transcriptional regulator  46.02 
 
 
232 aa  214  7e-55  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.441781 
 
 
-
 
NC_008345  Sfri_2018  fumarate/nitrate reduction transcriptional regulator  44.39 
 
 
252 aa  214  9.999999999999999e-55  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.831368  n/a   
 
 
-
 
NC_009379  Pnuc_0460  CRP/FNR family transcriptional regulator  44.39 
 
 
256 aa  212  4.9999999999999996e-54  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2222  fumarate/nitrate reduction transcriptional regulator  43.36 
 
 
250 aa  211  1e-53  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0665535  n/a   
 
 
-
 
NC_009438  Sputcn32_1951  fumarate/nitrate reduction transcriptional regulator  43.67 
 
 
250 aa  211  1e-53  Shewanella putrefaciens CN-32  Bacteria  normal  0.80493  n/a   
 
 
-
 
NC_008709  Ping_0931  fumarate/nitrate reduction transcriptional regulator  42.6 
 
 
249 aa  210  2e-53  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.896198 
 
 
-
 
NC_009783  VIBHAR_02295  fumarate/nitrate reduction transcriptional regulator  43.5 
 
 
248 aa  210  2e-53  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_2115  fumarate/nitrate reduction transcriptional regulator  43.48 
 
 
250 aa  209  3e-53  Shewanella sp. ANA-3  Bacteria  normal  0.508722  normal  0.0650668 
 
 
-
 
NC_010682  Rpic_2510  transcriptional regulator, Crp/Fnr family  46.64 
 
 
274 aa  209  3e-53  Ralstonia pickettii 12J  Bacteria  normal  normal  0.6173 
 
 
-
 
NC_007347  Reut_A2034  cyclic nucleotide-binding: regulatory protein, Crp  45.13 
 
 
232 aa  209  3e-53  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003475  fumarate and nitrate reduction regulatory protein  42.92 
 
 
248 aa  209  3e-53  Vibrio sp. Ex25  Bacteria  normal  0.292896  n/a   
 
 
-
 
NC_008321  Shewmr4_2014  fumarate/nitrate reduction transcriptional regulator  43.48 
 
 
250 aa  209  3e-53  Shewanella sp. MR-4  Bacteria  normal  decreased coverage  0.00000000422436 
 
 
-
 
NC_008322  Shewmr7_1961  fumarate/nitrate reduction transcriptional regulator  43.95 
 
 
250 aa  209  3e-53  Shewanella sp. MR-7  Bacteria  normal  hitchhiker  0.00754009 
 
 
-
 
NC_003910  CPS_1987  fumarate/nitrate reduction transcriptional regulator  44.2 
 
 
239 aa  209  4e-53  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I1571  fumarate/nitrate reduction transcriptional regulator  43.5 
 
 
250 aa  209  4e-53  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.75505  n/a   
 
 
-
 
NC_007954  Sden_1843  fumarate/nitrate reduction transcriptional regulator  42.86 
 
 
250 aa  209  4e-53  Shewanella denitrificans OS217  Bacteria  normal  0.0177159  n/a   
 
 
-
 
NC_012880  Dd703_1864  fumarate/nitrate reduction transcriptional regulator  43.05 
 
 
250 aa  208  6e-53  Dickeya dadantii Ech703  Bacteria  normal  0.856056  n/a   
 
 
-
 
CP001637  EcDH1_2311  transcriptional regulator, Crp/Fnr family  43.05 
 
 
250 aa  207  1e-52  Escherichia coli DH1  Bacteria  normal  0.144598  n/a   
 
 
-
 
NC_009801  EcE24377A_1546  fumarate/nitrate reduction transcriptional regulator  43.05 
 
 
250 aa  207  1e-52  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2356  fumarate/nitrate reduction transcriptional regulator  43.48 
 
 
254 aa  207  1e-52  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010658  SbBS512_E1575  fumarate/nitrate reduction transcriptional regulator  43.05 
 
 
250 aa  207  1e-52  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2291  fumarate/nitrate reduction transcriptional regulator  43.05 
 
 
250 aa  207  1e-52  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B1491  fumarate/nitrate reduction transcriptional regulator  43.05 
 
 
250 aa  207  1e-52  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0202312  n/a   
 
 
-
 
NC_010498  EcSMS35_1788  fumarate/nitrate reduction transcriptional regulator  43.05 
 
 
250 aa  207  1e-52  Escherichia coli SMS-3-5  Bacteria  normal  0.765276  normal 
 
 
-
 
NC_011205  SeD_A1673  fumarate/nitrate reduction transcriptional regulator  43.05 
 
 
250 aa  207  1e-52  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.349784  normal  0.0983377 
 
 
-
 
NC_011080  SNSL254_A1783  fumarate/nitrate reduction transcriptional regulator  43.05 
 
 
250 aa  207  1e-52  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.251439 
 
 
-
 
NC_011083  SeHA_C1845  fumarate/nitrate reduction transcriptional regulator  43.05 
 
 
250 aa  207  1e-52  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.918423  normal 
 
 
-
 
NC_012912  Dd1591_2081  fumarate/nitrate reduction transcriptional regulator  43.78 
 
 
250 aa  207  1e-52  Dickeya zeae Ech1591  Bacteria  normal  0.0488524  n/a   
 
 
-
 
NC_012917  PC1_2105  fumarate/nitrate reduction transcriptional regulator  42.92 
 
 
248 aa  207  1e-52  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0944449  n/a   
 
 
-
 
NC_009800  EcHS_A1450  fumarate/nitrate reduction transcriptional regulator  43.05 
 
 
250 aa  207  1e-52  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
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