More than 300 homologs were found in PanDaTox collection
for query gene BamMC406_0549 on replicon NC_010551
Organism: Burkholderia ambifaria MC40-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010551  BamMC406_0549  short-chain dehydrogenase/reductase SDR  100 
 
 
270 aa  538  9.999999999999999e-153  Burkholderia ambifaria MC40-6  Bacteria  decreased coverage  0.00753595  normal  0.67708 
 
 
-
 
NC_008390  Bamb_0525  short-chain dehydrogenase/reductase SDR  98.89 
 
 
271 aa  529  1e-149  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A3706  Short-chain dehydrogenase/reductase SDR  90.77 
 
 
268 aa  481  1e-135  Burkholderia sp. 383  Bacteria  normal  0.283086  normal  0.654023 
 
 
-
 
NC_010508  Bcenmc03_0592  short-chain dehydrogenase/reductase SDR  87.23 
 
 
271 aa  456  1e-127  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.0410788 
 
 
-
 
NC_008060  Bcen_0141  short-chain dehydrogenase/reductase SDR  87.23 
 
 
271 aa  456  1e-127  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0624  short-chain dehydrogenase/reductase SDR  87.23 
 
 
271 aa  456  1e-127  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0853252  n/a   
 
 
-
 
NC_010084  Bmul_2761  short-chain dehydrogenase/reductase SDR  85.24 
 
 
264 aa  450  1e-125  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.386853 
 
 
-
 
NC_006348  BMA2483  short chain dehydrogenase/reductase family oxidoreductase  81.41 
 
 
268 aa  424  1e-118  Burkholderia mallei ATCC 23344  Bacteria  normal  0.709099  n/a   
 
 
-
 
NC_009080  BMA10247_3302  short chain dehydrogenase/reductase family oxidoreductase  81.41 
 
 
268 aa  424  1e-118  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3480  short chain dehydrogenase/reductase family oxidoreductase  81.41 
 
 
268 aa  424  1e-118  Burkholderia pseudomallei 1710b  Bacteria  normal  0.538943  n/a   
 
 
-
 
NC_009076  BURPS1106A_3483  NAD dependent epimerase/dehydratase family protein  80.29 
 
 
271 aa  424  1e-118  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0403  short chain dehydrogenase/reductase family oxidoreductase  81.41 
 
 
268 aa  424  1e-118  Burkholderia mallei SAVP1  Bacteria  normal  0.253369  n/a   
 
 
-
 
NC_008836  BMA10229_A1263  short chain dehydrogenase/reductase family oxidoreductase  81.41 
 
 
268 aa  424  1e-118  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3445  NAD dependent epimerase/dehydratase family protein  81.41 
 
 
268 aa  424  1e-118  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I1182  short chain dehydrogenase/reductase family oxidoreductase  83.59 
 
 
271 aa  416  9.999999999999999e-116  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A0549  putative short-chain dehydrogenase/reductase, FabG-like  76.36 
 
 
266 aa  401  1e-111  Burkholderia xenovorans LB400  Bacteria  normal  0.204322  normal  0.437639 
 
 
-
 
NC_010681  Bphyt_3408  short-chain dehydrogenase/reductase SDR  75.97 
 
 
266 aa  400  9.999999999999999e-111  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0359384  normal  0.0764099 
 
 
-
 
NC_010622  Bphy_2612  short-chain dehydrogenase/reductase SDR  77.95 
 
 
266 aa  397  9.999999999999999e-111  Burkholderia phymatum STM815  Bacteria  normal  normal  0.227086 
 
 
-
 
NC_007908  Rfer_0433  short-chain dehydrogenase/reductase SDR  62.85 
 
 
254 aa  324  1e-87  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_5073  short-chain dehydrogenase/reductase SDR  58.15 
 
 
261 aa  274  9e-73  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_4106  short-chain dehydrogenase/reductase SDR  53.75 
 
 
256 aa  272  3e-72  Marinomonas sp. MWYL1  Bacteria  normal  decreased coverage  0.00000000241543 
 
 
-
 
NC_007912  Sde_0771  GntR family transcriptional regulator  54.18 
 
 
256 aa  268  8e-71  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.00515913  normal  0.0552536 
 
 
-
 
NC_007912  Sde_0761  putative oxidoreductase  52.21 
 
 
255 aa  266  2e-70  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.429001 
 
 
-
 
NC_009484  Acry_2599  short-chain dehydrogenase/reductase SDR  53.97 
 
 
257 aa  255  4e-67  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_0389  short-chain dehydrogenase/reductase SDR  57.31 
 
 
261 aa  255  6e-67  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.132836  normal  0.554145 
 
 
-
 
NC_009438  Sputcn32_2061  short-chain dehydrogenase/reductase SDR  50 
 
 
256 aa  248  7e-65  Shewanella putrefaciens CN-32  Bacteria  normal  0.138185  n/a   
 
 
-
 
NC_012791  Vapar_1041  short-chain dehydrogenase/reductase SDR  52.4 
 
 
258 aa  248  9e-65  Variovorax paradoxus S110  Bacteria  normal  0.208357  n/a   
 
 
-
 
NC_012560  Avin_51440  Short-chain dehydrogenase/reductase (SDR) family protein  54.76 
 
 
260 aa  246  3e-64  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_1990  short-chain dehydrogenase/reductase SDR  50 
 
 
256 aa  246  3e-64  Shewanella sp. MR-7  Bacteria  normal  0.0224708  unclonable  0.0000202886 
 
 
-
 
NC_011663  Sbal223_2145  short-chain dehydrogenase/reductase SDR  49.21 
 
 
256 aa  246  4e-64  Shewanella baltica OS223  Bacteria  normal  0.0597739  normal  0.690345 
 
 
-
 
NC_008321  Shewmr4_1984  short-chain dehydrogenase/reductase SDR  49.6 
 
 
256 aa  243  1.9999999999999999e-63  Shewanella sp. MR-4  Bacteria  hitchhiker  0.00682949  normal  0.0302653 
 
 
-
 
NC_008577  Shewana3_2071  short-chain dehydrogenase/reductase SDR  49.6 
 
 
256 aa  242  5e-63  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00640028  hitchhiker  0.00000248708 
 
 
-
 
NC_012857  Rpic12D_4189  short-chain dehydrogenase/reductase SDR  54.15 
 
 
255 aa  241  7e-63  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4077  short-chain dehydrogenase/reductase SDR  54.15 
 
 
255 aa  241  7e-63  Ralstonia pickettii 12J  Bacteria  normal  0.13973  normal 
 
 
-
 
NC_007953  Bxe_C1363  D-xylose dehydrogenase  50.99 
 
 
268 aa  240  2e-62  Burkholderia xenovorans LB400  Bacteria  normal  0.879722  normal  0.999685 
 
 
-
 
NC_008786  Veis_0735  short-chain dehydrogenase/reductase SDR  52.36 
 
 
270 aa  239  2.9999999999999997e-62  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.304096  normal 
 
 
-
 
NC_010505  Mrad2831_5401  short-chain dehydrogenase/reductase SDR  51.35 
 
 
258 aa  239  4e-62  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_3587  short-chain dehydrogenase/reductase SDR  51 
 
 
255 aa  236  3e-61  Chelativorans sp. BNC1  Bacteria  normal  0.435673  n/a   
 
 
-
 
NC_007802  Jann_2374  short-chain dehydrogenase/reductase SDR  49.61 
 
 
251 aa  231  1e-59  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0516  short-chain dehydrogenase/reductase SDR  45.38 
 
 
254 aa  216  2.9999999999999998e-55  Marinomonas sp. MWYL1  Bacteria  normal  0.098133  normal 
 
 
-
 
NC_007493  RSP_1369  Short-chain dehydrogenase/reductase SDR  49.61 
 
 
260 aa  215  7e-55  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_0037  short-chain dehydrogenase/reductase SDR  49.22 
 
 
260 aa  214  9.999999999999999e-55  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_2258  short-chain dehydrogenase/reductase SDR  50 
 
 
271 aa  214  9.999999999999999e-55  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0225727  hitchhiker  0.000000282328 
 
 
-
 
NC_007802  Jann_3834  short-chain dehydrogenase/reductase SDR  45.63 
 
 
256 aa  213  2.9999999999999995e-54  Jannaschia sp. CCS1  Bacteria  normal  0.140905  normal 
 
 
-
 
NC_008228  Patl_3529  short-chain dehydrogenase/reductase SDR  45.67 
 
 
270 aa  208  8e-53  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_0941  short-chain dehydrogenase/reductase SDR  49.8 
 
 
251 aa  208  9e-53  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.995863 
 
 
-
 
NC_010338  Caul_4001  short-chain dehydrogenase/reductase SDR  46.67 
 
 
259 aa  207  2e-52  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_1243  short-chain dehydrogenase/reductase SDR  47.58 
 
 
258 aa  206  2e-52  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.455666  normal  0.236793 
 
 
-
 
NC_008043  TM1040_3488  short-chain dehydrogenase/reductase SDR  46.72 
 
 
256 aa  206  4e-52  Ruegeria sp. TM1040  Bacteria  normal  normal  0.742718 
 
 
-
 
NC_009636  Smed_0438  short-chain dehydrogenase/reductase SDR  47.41 
 
 
256 aa  206  4e-52  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.285603 
 
 
-
 
NC_009428  Rsph17025_0027  short-chain dehydrogenase/reductase SDR  49.81 
 
 
288 aa  202  4e-51  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_0503  short-chain dehydrogenase/reductase SDR  49 
 
 
253 aa  199  5e-50  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
BN001304  ANIA_07128  conserved hypothetical protein  40.75 
 
 
275 aa  197  2.0000000000000003e-49  Aspergillus nidulans FGSC A4  Eukaryota  hitchhiker  0.00131023  normal  0.0770254 
 
 
-
 
NC_012850  Rleg_0546  short-chain dehydrogenase/reductase SDR  48.61 
 
 
257 aa  196  3e-49  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_1729  D-xylose dehydrogenase  47.22 
 
 
245 aa  186  4e-46  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.380531  n/a   
 
 
-
 
NC_010506  Swoo_3666  short-chain dehydrogenase/reductase SDR  39.43 
 
 
255 aa  172  5e-42  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00136979  normal 
 
 
-
 
NC_010505  Mrad2831_3001  short-chain dehydrogenase/reductase SDR  40.64 
 
 
249 aa  142  6e-33  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_2746  short-chain dehydrogenase/reductase SDR  41.04 
 
 
249 aa  141  9e-33  Methylobacterium sp. 4-46  Bacteria  normal  0.458004  normal  0.197887 
 
 
-
 
NC_011757  Mchl_2365  short-chain dehydrogenase/reductase SDR  41.43 
 
 
249 aa  139  3.9999999999999997e-32  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.0450975 
 
 
-
 
NC_011737  PCC7424_5536  short-chain dehydrogenase/reductase SDR  35.94 
 
 
254 aa  139  3.9999999999999997e-32  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0819159 
 
 
-
 
NC_010172  Mext_2090  short-chain dehydrogenase/reductase SDR  41.04 
 
 
249 aa  138  7.999999999999999e-32  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.120513 
 
 
-
 
NC_012918  GM21_2843  short-chain dehydrogenase/reductase SDR  34.24 
 
 
255 aa  138  1e-31  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011894  Mnod_4381  short-chain dehydrogenase/reductase SDR  41.27 
 
 
254 aa  137  2e-31  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3851  short-chain dehydrogenase/reductase SDR  35.61 
 
 
256 aa  134  1.9999999999999998e-30  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.575902  normal  0.466968 
 
 
-
 
NC_010725  Mpop_0259  short-chain dehydrogenase/reductase SDR  38.65 
 
 
249 aa  132  5e-30  Methylobacterium populi BJ001  Bacteria  normal  normal  0.519285 
 
 
-
 
NC_012034  Athe_1156  3-oxoacyl-(acyl-carrier-protein) reductase  34 
 
 
248 aa  132  6.999999999999999e-30  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.0000000536759  n/a   
 
 
-
 
NC_007794  Saro_1560  short-chain dehydrogenase/reductase SDR  37.65 
 
 
257 aa  132  7.999999999999999e-30  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.0890906  n/a   
 
 
-
 
NC_009901  Spea_2148  short-chain dehydrogenase/reductase SDR  34.65 
 
 
247 aa  132  7.999999999999999e-30  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_2801  3-oxoacyl-(acyl-carrier-protein) reductase  37.6 
 
 
249 aa  131  1.0000000000000001e-29  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_6140  short-chain dehydrogenase/reductase SDR  38.65 
 
 
254 aa  131  1.0000000000000001e-29  Burkholderia phytofirmans PsJN  Bacteria  normal  0.601598  normal 
 
 
-
 
NC_007488  RSP_3963  Short-chain dehydrogenase/reductase SDR  36.29 
 
 
251 aa  130  2.0000000000000002e-29  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.680971  n/a   
 
 
-
 
NC_008686  Pden_0474  3-ketoacyl-(acyl-carrier-protein) reductase  36.33 
 
 
254 aa  130  2.0000000000000002e-29  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_011898  Ccel_1173  short-chain dehydrogenase/reductase SDR  31.66 
 
 
256 aa  129  5.0000000000000004e-29  Clostridium cellulolyticum H10  Bacteria  normal  0.0283651  n/a   
 
 
-
 
NC_007517  Gmet_2249  Short-chain dehydrogenase/reductase SDR  33.85 
 
 
260 aa  129  7.000000000000001e-29  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00000000000113674  decreased coverage  1.89116e-19 
 
 
-
 
NC_007950  Bpro_5564  short-chain dehydrogenase/reductase SDR  35.51 
 
 
250 aa  127  1.0000000000000001e-28  Polaromonas sp. JS666  Bacteria  normal  0.0387947  normal 
 
 
-
 
NC_007348  Reut_B4572  2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase  35.83 
 
 
258 aa  127  2.0000000000000002e-28  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0729  short-chain dehydrogenase/reductase SDR  30.77 
 
 
251 aa  126  4.0000000000000003e-28  Petrotoga mobilis SJ95  Bacteria  normal  0.0262547  n/a   
 
 
-
 
NC_009077  Mjls_3399  short-chain dehydrogenase/reductase SDR  37.85 
 
 
251 aa  126  4.0000000000000003e-28  Mycobacterium sp. JLS  Bacteria  normal  0.265476  normal  0.579067 
 
 
-
 
NC_008146  Mmcs_3389  short-chain dehydrogenase/reductase SDR  37.85 
 
 
251 aa  126  4.0000000000000003e-28  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_3451  short-chain dehydrogenase/reductase SDR  37.85 
 
 
251 aa  126  4.0000000000000003e-28  Mycobacterium sp. KMS  Bacteria  normal  0.282866  normal  0.301564 
 
 
-
 
NC_010551  BamMC406_1208  short-chain dehydrogenase/reductase SDR  35.94 
 
 
260 aa  125  5e-28  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_1779  short-chain dehydrogenase/reductase SDR  34.52 
 
 
254 aa  126  5e-28  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_007509  Bcep18194_C7178  short chain dehydrogenase  36.61 
 
 
262 aa  125  7e-28  Burkholderia sp. 383  Bacteria  normal  normal  0.0959368 
 
 
-
 
NC_013411  GYMC61_1779  short-chain dehydrogenase/reductase SDR  31.73 
 
 
249 aa  125  9e-28  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011898  Ccel_2089  short-chain dehydrogenase/reductase SDR  32.93 
 
 
246 aa  124  1e-27  Clostridium cellulolyticum H10  Bacteria  normal  0.0163129  n/a   
 
 
-
 
NC_013205  Aaci_0156  short-chain dehydrogenase/reductase SDR  34.43 
 
 
253 aa  124  1e-27  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  hitchhiker  0.000000282185  n/a   
 
 
-
 
NC_010512  Bcenmc03_6360  short chain dehydrogenase  37.4 
 
 
262 aa  124  1e-27  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_4827  short-chain dehydrogenase/reductase SDR  37.21 
 
 
295 aa  125  1e-27  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_3580  short-chain dehydrogenase/reductase SDR  34.78 
 
 
252 aa  124  1e-27  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_008062  Bcen_5486  short chain dehydrogenase  38.13 
 
 
262 aa  124  2e-27  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.398056  n/a   
 
 
-
 
NC_008544  Bcen2424_6772  short chain dehydrogenase  38.13 
 
 
262 aa  124  2e-27  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.646299 
 
 
-
 
NC_002947  PP_1852  3-ketoacyl-(acyl-carrier-protein) reductase  37.6 
 
 
249 aa  123  3e-27  Pseudomonas putida KT2440  Bacteria  normal  0.454003  normal 
 
 
-
 
NC_009077  Mjls_3782  short-chain dehydrogenase/reductase SDR  33.98 
 
 
282 aa  123  3e-27  Mycobacterium sp. JLS  Bacteria  normal  0.25135  normal 
 
 
-
 
NC_009720  Xaut_1138  short-chain dehydrogenase/reductase SDR  36.55 
 
 
255 aa  123  3e-27  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_1428  3-ketoacyl-(acyl-carrier-protein) reductase  38.37 
 
 
249 aa  122  4e-27  Pseudomonas putida GB-1  Bacteria  normal  normal  0.596689 
 
 
-
 
NC_007511  Bcep18194_B2225  Short-chain dehydrogenase/reductase SDR  34.46 
 
 
267 aa  123  4e-27  Burkholderia sp. 383  Bacteria  normal  normal  0.801106 
 
 
-
 
NC_007973  Rmet_3320  short chain dehydrogenase  35.2 
 
 
262 aa  123  4e-27  Cupriavidus metallidurans CH34  Bacteria  normal  0.694446  normal 
 
 
-
 
NC_013744  Htur_4226  short-chain dehydrogenase/reductase SDR  33.33 
 
 
255 aa  123  4e-27  Haloterrigena turkmenica DSM 5511  Archaea  normal  n/a   
 
 
-
 
NC_009512  Pput_3860  3-ketoacyl-(acyl-carrier-protein) reductase  37.6 
 
 
249 aa  122  5e-27  Pseudomonas putida F1  Bacteria  normal  0.840744  normal  0.0763537 
 
 
-
 
NC_010623  Bphy_5382  short chain dehydrogenase  36.65 
 
 
247 aa  122  5e-27  Burkholderia phymatum STM815  Bacteria  normal  0.429427  normal  0.712878 
 
 
-
 
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