More than 300 homologs were found in PanDaTox collection
for query gene BBta_3079 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_3079  two component LuxR family transcriptional regulator  100 
 
 
233 aa  464  9.999999999999999e-131  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3789  response regulator receiver  63.88 
 
 
228 aa  292  4e-78  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0916709 
 
 
-
 
NC_007778  RPB_4035  two component LuxR family transcriptional regulator  63.84 
 
 
228 aa  288  5.0000000000000004e-77  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_1676  two component transcriptional regulator, LuxR family  62.72 
 
 
228 aa  288  7e-77  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4449  two component LuxR family transcriptional regulator  61.57 
 
 
230 aa  274  7e-73  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.683214 
 
 
-
 
NC_007925  RPC_3790  two component LuxR family transcriptional regulator  58.74 
 
 
226 aa  269  2.9999999999999997e-71  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_2401  response regulator receiver  59.03 
 
 
230 aa  269  2.9999999999999997e-71  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0808908 
 
 
-
 
NC_011666  Msil_2019  two component transcriptional regulator, LuxR family  60 
 
 
223 aa  249  3e-65  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_011004  Rpal_3423  two component transcriptional regulator, LuxR family  55.56 
 
 
235 aa  243  3e-63  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.324081  n/a   
 
 
-
 
NC_010505  Mrad2831_3042  two component LuxR family transcriptional regulator  48.84 
 
 
222 aa  201  7e-51  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.280021 
 
 
-
 
NC_010725  Mpop_3747  two component transcriptional regulator, LuxR family  48.18 
 
 
221 aa  201  9.999999999999999e-51  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_5717  two component LuxR family transcriptional regulator  48.6 
 
 
220 aa  194  8.000000000000001e-49  Methylobacterium sp. 4-46  Bacteria  normal  0.873964  hitchhiker  0.00405289 
 
 
-
 
NC_007778  RPB_4442  response regulator receiver domain-containing protein  64.29 
 
 
172 aa  189  4e-47  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.591595 
 
 
-
 
NC_007958  RPD_2393  response regulator receiver  64.93 
 
 
172 aa  188  7e-47  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.820012  normal  0.124287 
 
 
-
 
NC_011894  Mnod_0855  two component transcriptional regulator, LuxR family  43.23 
 
 
223 aa  187  9e-47  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.082304  n/a   
 
 
-
 
NC_011894  Mnod_0851  two component transcriptional regulator, LuxR family  40.45 
 
 
232 aa  161  9e-39  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_4860  two component transcriptional regulator, LuxR family  43.38 
 
 
236 aa  159  2e-38  Methylobacterium populi BJ001  Bacteria  normal  normal  0.142587 
 
 
-
 
NC_011757  Mchl_1985  two component transcriptional regulator, LuxR family  38.6 
 
 
222 aa  156  2e-37  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_0347  two component transcriptional regulator, LuxR family  38.68 
 
 
222 aa  157  2e-37  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1668  response regulator receiver  38.68 
 
 
222 aa  156  3e-37  Methylobacterium extorquens PA1  Bacteria  normal  0.679138  normal 
 
 
-
 
NC_002939  GSU0682  LuxR family DNA-binding response regulator  42.65 
 
 
215 aa  155  7e-37  Geobacter sulfurreducens PCA  Bacteria  normal  0.874366  n/a   
 
 
-
 
NC_011830  Dhaf_1230  two component transcriptional regulator, LuxR family  36.92 
 
 
215 aa  154  1e-36  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_4343  response regulator receiver  40.18 
 
 
236 aa  152  5e-36  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_4712  two component transcriptional regulator, LuxR family  40.18 
 
 
236 aa  152  5e-36  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.37561  normal 
 
 
-
 
NC_007760  Adeh_1997  two component LuxR family transcriptional regulator  39.53 
 
 
218 aa  150  1e-35  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  39.07 
 
 
218 aa  150  2e-35  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  39.07 
 
 
218 aa  150  2e-35  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_007644  Moth_0023  two component LuxR family transcriptional regulator  40.47 
 
 
221 aa  149  3e-35  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.273145  hitchhiker  0.00000136124 
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  37.5 
 
 
213 aa  149  3e-35  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1810  two component LuxR family transcriptional regulator  40 
 
 
218 aa  149  5e-35  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_1194  two component transcriptional regulator, LuxR family  37.16 
 
 
217 aa  148  6e-35  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.272513  n/a   
 
 
-
 
NC_012918  GM21_1103  two component transcriptional regulator, LuxR family  39.53 
 
 
216 aa  148  7e-35  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011831  Cagg_3668  two component transcriptional regulator, LuxR family  40.38 
 
 
213 aa  147  1.0000000000000001e-34  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  38.94 
 
 
228 aa  143  3e-33  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_1385  two component LuxR family transcriptional regulator  41.63 
 
 
212 aa  142  4e-33  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_009455  DehaBAV1_0945  two component LuxR family transcriptional regulator  38.39 
 
 
232 aa  142  4e-33  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2780  two component LuxR family transcriptional regulator  40.09 
 
 
226 aa  142  4e-33  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1406  DNA-binding response regulator  34.98 
 
 
215 aa  141  7e-33  Colwellia psychrerythraea 34H  Bacteria  normal  0.253896  n/a   
 
 
-
 
NC_011830  Dhaf_1205  two component transcriptional regulator, LuxR family  36.15 
 
 
212 aa  141  7e-33  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_1123  two component transcriptional regulator, LuxR family  35.75 
 
 
242 aa  141  9.999999999999999e-33  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_0029  two component LuxR family transcriptional regulator  39.81 
 
 
214 aa  140  9.999999999999999e-33  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.317943  n/a   
 
 
-
 
NC_013739  Cwoe_3988  two component transcriptional regulator, LuxR family  37.33 
 
 
228 aa  140  9.999999999999999e-33  Conexibacter woesei DSM 14684  Bacteria  normal  0.0354189  normal  0.736565 
 
 
-
 
NC_009654  Mmwyl1_0679  two component LuxR family transcriptional regulator  34.93 
 
 
213 aa  140  1.9999999999999998e-32  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU1293  LuxR family DNA-binding response regulator  37.33 
 
 
216 aa  139  3e-32  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_3764  response regulator receiver  39.25 
 
 
217 aa  137  2e-31  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.321181  n/a   
 
 
-
 
NC_007952  Bxe_B2471  two component LuxR family transcriptional regulator  39.34 
 
 
220 aa  136  3.0000000000000003e-31  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.55611 
 
 
-
 
NC_012918  GM21_0467  two component transcriptional regulator, LuxR family  37.09 
 
 
216 aa  136  3.0000000000000003e-31  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000507383 
 
 
-
 
NC_013552  DhcVS_934  DNA-binding response regulator, LuxR family  36.62 
 
 
232 aa  135  4e-31  Dehalococcoides sp. VS  Bacteria  normal  0.717523  n/a   
 
 
-
 
NC_008228  Patl_2290  two component LuxR family transcriptional regulator  32.58 
 
 
215 aa  135  5e-31  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_2093  two component LuxR family transcriptional regulator  38.68 
 
 
206 aa  135  5e-31  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000328625  normal  0.180863 
 
 
-
 
NC_009455  DehaBAV1_0632  two component LuxR family transcriptional regulator  34.25 
 
 
224 aa  135  7.000000000000001e-31  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.00385785  n/a   
 
 
-
 
NC_007347  Reut_A1216  two component LuxR family transcriptional regulator  39.81 
 
 
215 aa  134  9e-31  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_0815  two component LuxR family transcriptional regulator  36.36 
 
 
213 aa  134  9e-31  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.00000180305  normal 
 
 
-
 
NC_002976  SERP1981  transcriptional regulatory protein DegU, putative  34.86 
 
 
218 aa  134  9.999999999999999e-31  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_0451  two component transcriptional regulator, LuxR family  36.62 
 
 
216 aa  134  9.999999999999999e-31  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3105  two component transcriptional regulator, LuxR family  37.02 
 
 
223 aa  134  9.999999999999999e-31  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013552  DhcVS_601  DNA-binding response regulator, LuxR family  34.25 
 
 
224 aa  134  9.999999999999999e-31  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_0648  two component transcriptional regulator, LuxR family  37.85 
 
 
215 aa  134  9.999999999999999e-31  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_1664  two component LuxR family transcriptional regulator  35.21 
 
 
218 aa  134  9.999999999999999e-31  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.49018  normal 
 
 
-
 
NC_004310  BR0342  LuxR family DNA-binding response regulator  34.74 
 
 
213 aa  133  1.9999999999999998e-30  Brucella suis 1330  Bacteria  normal  0.0601944  n/a   
 
 
-
 
NC_009505  BOV_0358  LuxR family DNA-binding response regulator  34.74 
 
 
213 aa  133  1.9999999999999998e-30  Brucella ovis ATCC 25840  Bacteria  normal  0.363  n/a   
 
 
-
 
NC_010001  Cphy_3936  two component LuxR family transcriptional regulator  32.24 
 
 
213 aa  133  1.9999999999999998e-30  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00507176  n/a   
 
 
-
 
NC_002936  DET0663  LuxR family DNA-binding response regulator  33.79 
 
 
224 aa  132  3e-30  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0697  LuxR family DNA-binding response regulator  33.79 
 
 
224 aa  132  3e-30  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_4290  two component LuxR family transcriptional regulator  35.62 
 
 
218 aa  132  3e-30  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0175  two component transcriptional regulator, LuxR family  37.67 
 
 
222 aa  132  3.9999999999999996e-30  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_2253  two component transcriptional regulator, LuxR family  33.02 
 
 
216 aa  132  5e-30  Geobacter bemidjiensis Bem  Bacteria  normal  0.174263  n/a   
 
 
-
 
NC_002936  DET1063  LuxR family DNA-binding response regulator  36.62 
 
 
232 aa  132  6e-30  Dehalococcoides ethenogenes 195  Bacteria  normal  0.815436  n/a   
 
 
-
 
NC_008391  Bamb_5330  two component LuxR family transcriptional regulator  38.16 
 
 
215 aa  131  7.999999999999999e-30  Burkholderia ambifaria AMMD  Bacteria  normal  0.858277  normal 
 
 
-
 
NC_009997  Sbal195_2246  two component LuxR family transcriptional regulator  34.43 
 
 
214 aa  131  9e-30  Shewanella baltica OS195  Bacteria  normal  0.0703025  hitchhiker  0.00413313 
 
 
-
 
NC_009487  SaurJH9_2415  two component LuxR family transcriptional regulator  34.1 
 
 
217 aa  130  1.0000000000000001e-29  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0896  LuxR family transcriptional regulator  35.98 
 
 
216 aa  130  1.0000000000000001e-29  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_2463  response regulator receiver  34.1 
 
 
217 aa  130  1.0000000000000001e-29  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_5893  two component transcriptional regulator, LuxR family  39.71 
 
 
218 aa  130  2.0000000000000002e-29  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0894  two component LuxR family transcriptional regulator  35.98 
 
 
217 aa  130  2.0000000000000002e-29  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_4516  two component LuxR family transcriptional regulator  39.42 
 
 
214 aa  130  2.0000000000000002e-29  Cupriavidus metallidurans CH34  Bacteria  normal  0.0463384  normal  0.0270495 
 
 
-
 
NC_008044  TM1040_0876  two component LuxR family transcriptional regulator  35.81 
 
 
233 aa  130  2.0000000000000002e-29  Ruegeria sp. TM1040  Bacteria  normal  0.481499  normal  0.345787 
 
 
-
 
NC_008255  CHU_1317  response regulator  33.33 
 
 
220 aa  130  2.0000000000000002e-29  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.500574  normal  0.0503905 
 
 
-
 
NC_008543  Bcen2424_3595  two component LuxR family transcriptional regulator  38.16 
 
 
215 aa  130  3e-29  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_3925  two component LuxR family transcriptional regulator  38.16 
 
 
215 aa  129  3e-29  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_0790  two component LuxR family transcriptional regulator  35.55 
 
 
214 aa  129  3e-29  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.870503  normal  0.997505 
 
 
-
 
NC_009952  Dshi_2345  two component transcriptional regulator  34.72 
 
 
220 aa  129  4.0000000000000003e-29  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.499423  normal  0.134206 
 
 
-
 
NC_009441  Fjoh_4664  two component LuxR family transcriptional regulator  31.19 
 
 
219 aa  129  4.0000000000000003e-29  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013170  Ccur_06630  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  38.46 
 
 
215 aa  129  5.0000000000000004e-29  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.252447  normal  0.303532 
 
 
-
 
NC_009052  Sbal_1943  two component LuxR family transcriptional regulator  33.94 
 
 
214 aa  128  6e-29  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_1239  two component LuxR family transcriptional regulator  37.31 
 
 
196 aa  128  6e-29  Opitutus terrae PB90-1  Bacteria  normal  0.0482404  normal  0.916816 
 
 
-
 
NC_010625  Bphy_7047  two component LuxR family transcriptional regulator  35.75 
 
 
215 aa  128  9.000000000000001e-29  Burkholderia phymatum STM815  Bacteria  normal  normal  0.976007 
 
 
-
 
NC_010506  Swoo_3747  two component LuxR family transcriptional regulator  32.86 
 
 
206 aa  127  1.0000000000000001e-28  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_003136  transcriptional regulator LuxR family protein  35.71 
 
 
212 aa  127  1.0000000000000001e-28  Vibrio sp. Ex25  Bacteria  normal  0.12843  n/a   
 
 
-
 
NC_007614  Nmul_A1336  two component LuxR family transcriptional regulator  35.68 
 
 
208 aa  127  1.0000000000000001e-28  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_1691  two component LuxR family transcriptional regulator  34.11 
 
 
208 aa  127  1.0000000000000001e-28  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0637899 
 
 
-
 
NC_014212  Mesil_1051  two component transcriptional regulator, LuxR family  38.21 
 
 
211 aa  127  1.0000000000000001e-28  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0337978 
 
 
-
 
NC_011883  Ddes_0810  two component transcriptional regulator, LuxR family  39.07 
 
 
223 aa  127  2.0000000000000002e-28  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.935684  n/a   
 
 
-
 
NC_007614  Nmul_A1235  two component LuxR family transcriptional regulator  35.75 
 
 
211 aa  127  2.0000000000000002e-28  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_4296  two component LuxR family transcriptional regulator  38.68 
 
 
214 aa  127  2.0000000000000002e-28  Polaromonas sp. JS666  Bacteria  normal  0.891496  normal 
 
 
-
 
NC_008025  Dgeo_0183  two component LuxR family transcriptional regulator  37.26 
 
 
200 aa  127  2.0000000000000002e-28  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.541303  normal  0.654013 
 
 
-
 
NC_009972  Haur_1600  two component LuxR family transcriptional regulator  37.14 
 
 
207 aa  127  2.0000000000000002e-28  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B5066  LuxR response regulator receiver  35.91 
 
 
217 aa  126  3e-28  Ralstonia eutropha JMP134  Bacteria  normal  0.822528  n/a   
 
 
-
 
NC_007948  Bpro_1167  two component LuxR family transcriptional regulator  37.26 
 
 
213 aa  126  3e-28  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0443  two component LuxR family transcriptional regulator  34.74 
 
 
213 aa  126  3e-28  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>