59 homologs were found in PanDaTox collection
for query gene BBta_2864 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_2864  phenylacetic acid degradation operon negative regulatory protein paaX  100 
 
 
293 aa  580  1e-165  Bradyrhizobium sp. BTAi1  Bacteria  decreased coverage  0.00499823  normal  0.0484276 
 
 
-
 
NC_007925  RPC_0692  phenylacetic acid degradation operon negative regulatory protein PaaX  56.99 
 
 
287 aa  318  8e-86  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.717402  normal 
 
 
-
 
NC_009720  Xaut_0895  PaaX family transcriptional regulator  55.09 
 
 
305 aa  307  1e-82  Xanthobacter autotrophicus Py2  Bacteria  normal  0.947925  normal 
 
 
-
 
NC_011894  Mnod_7200  transcriptional regulator, PaaX family  51.94 
 
 
292 aa  249  3e-65  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.803046  n/a   
 
 
-
 
NC_010322  PputGB1_2610  PaaX family transcriptional regulator  38.59 
 
 
334 aa  207  2e-52  Pseudomonas putida GB-1  Bacteria  normal  0.218497  normal  0.0704814 
 
 
-
 
NC_010501  PputW619_2623  PaaX family transcriptional regulator  38.93 
 
 
334 aa  204  2e-51  Pseudomonas putida W619  Bacteria  normal  0.312733  normal  0.0873289 
 
 
-
 
NC_002947  PP_3286  PaaX family transcriptional regulator  37.92 
 
 
307 aa  203  3e-51  Pseudomonas putida KT2440  Bacteria  normal  0.17765  normal 
 
 
-
 
NC_009512  Pput_2473  PaaX family transcriptional regulator  37.92 
 
 
334 aa  202  5e-51  Pseudomonas putida F1  Bacteria  normal  0.303711  normal 
 
 
-
 
NC_009654  Mmwyl1_3103  PaaX family transcriptional regulator  36.99 
 
 
307 aa  200  2e-50  Marinomonas sp. MWYL1  Bacteria  decreased coverage  6.61945e-07  decreased coverage  3.97547e-05 
 
 
-
 
NC_009484  Acry_0094  PaaX family transcriptional regulator  43.15 
 
 
289 aa  192  7e-48  Acidiphilium cryptum JF-5  Bacteria  normal  0.339453  n/a   
 
 
-
 
NC_009832  Spro_3083  PaaX family transcriptional regulator  40.07 
 
 
312 aa  188  8e-47  Serratia proteamaculans 568  Bacteria  normal  normal  0.415086 
 
 
-
 
NC_007298  Daro_0386  phenylacetic acid degradation operon negative regulatory protein PaaX  39.32 
 
 
352 aa  185  6e-46  Dechloromonas aromatica RCB  Bacteria  hitchhiker  1.87716e-08  normal  0.0170462 
 
 
-
 
NC_011662  Tmz1t_1514  transcriptional regulator, PaaX family  41.41 
 
 
316 aa  184  2e-45  Thauera sp. MZ1T  Bacteria  normal  0.139923  n/a   
 
 
-
 
NC_007958  RPD_1521  phenylacetic acid degradation operon negative regulatory protein PaaX  35.71 
 
 
312 aa  174  2e-42  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4146  PaaX family transcriptional regulator  37.32 
 
 
305 aa  168  8e-41  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.85173 
 
 
-
 
NC_010468  EcolC_2256  PaaX family transcriptional regulator  36.21 
 
 
316 aa  164  1e-39  Escherichia coli ATCC 8739  Bacteria  normal  0.203735  normal 
 
 
-
 
NC_009800  EcHS_A1486  phenylacetic acid degradation operon negative regulatory protein PaaX  36.21 
 
 
316 aa  164  1e-39  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_2246  transcriptional regulator, PaaX family  36.21 
 
 
316 aa  164  1e-39  Escherichia coli DH1  Bacteria  normal  0.218129  n/a   
 
 
-
 
NC_009801  EcE24377A_1585  phenylacetic acid degradation operon negative regulatory protein PaaX  35.88 
 
 
316 aa  164  2e-39  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3357  transcriptional regulator, PaaX family  35.46 
 
 
301 aa  162  7e-39  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_0196  transcriptional regulator, PaaX family  34.13 
 
 
319 aa  159  5e-38  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2859  transcriptional regulator, PaaX family  33.96 
 
 
285 aa  157  2e-37  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007348  Reut_B3734  phenylacetic acid degradation operon negative regulatory protein PaaX  34.28 
 
 
307 aa  154  2e-36  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008688  Pden_4812  PaaX domain-containing protein  37.41 
 
 
284 aa  144  1e-33  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.33483 
 
 
-
 
NC_010506  Swoo_0216  PaaX family transcriptional regulator  29.59 
 
 
311 aa  142  8e-33  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.0165647 
 
 
-
 
NC_008709  Ping_0661  PaaX domain-containing protein, C- domain  29.39 
 
 
285 aa  136  4e-31  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_2835  transcriptional regulator, PaaX family  26.39 
 
 
285 aa  114  2e-24  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013947  Snas_0703  transcriptional regulator, PaaX family  29.37 
 
 
259 aa  102  7e-21  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_0708  PaaX family transcriptional regulator  29.3 
 
 
272 aa  96.3  5e-19  Salinispora tropica CNB-440  Bacteria  normal  0.719013  normal  0.640912 
 
 
-
 
NC_009953  Sare_0655  PaaX family transcriptional regulator  28.63 
 
 
272 aa  96.3  6e-19  Salinispora arenicola CNS-205  Bacteria  normal  0.0748596  hitchhiker  0.00291671 
 
 
-
 
NC_013946  Mrub_2629  PaaX family transcriptional regulator  29.37 
 
 
259 aa  94.7  1e-18  Meiothermus ruber DSM 1279  Bacteria  normal  0.495501  normal 
 
 
-
 
NC_013131  Caci_2009  transcriptional regulator, PaaX family  28.51 
 
 
281 aa  94.7  1e-18  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.429433  normal 
 
 
-
 
NC_013093  Amir_0787  transcriptional regulator, PaaX family  30.74 
 
 
268 aa  92.4  8e-18  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_6455  transcriptional regulator, PaaX family  31.15 
 
 
260 aa  92  1e-17  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_2150  transcriptional regulator, PaaX family  28.74 
 
 
289 aa  87.4  2e-16  Conexibacter woesei DSM 14684  Bacteria  normal  0.933136  normal  0.276366 
 
 
-
 
NC_014212  Mesil_0980  transcriptional regulator, PaaX family  27.09 
 
 
259 aa  86.3  6e-16  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.148761 
 
 
-
 
NC_009921  Franean1_1685  PaaX family transcriptional regulator  29.96 
 
 
333 aa  84  3e-15  Frankia sp. EAN1pec  Bacteria  normal  0.0710641  normal  0.260669 
 
 
-
 
NC_013159  Svir_19070  phenylacetic acid-responsive transcriptional repressor  26.74 
 
 
292 aa  82.4  8e-15  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0202563  normal 
 
 
-
 
NC_013595  Sros_8420  putative transcriptional regulator, PaaX family  29.17 
 
 
260 aa  82  1e-14  Streptosporangium roseum DSM 43021  Bacteria  normal  0.289328  normal 
 
 
-
 
NC_014151  Cfla_0294  transcriptional regulator, PaaX family  29.88 
 
 
318 aa  79  9e-14  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0429653  hitchhiker  8.64342e-05 
 
 
-
 
NC_009956  Dshi_3828  PaaX family transcriptional regulator  27.53 
 
 
264 aa  76.6  5e-13  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.648927  normal 
 
 
-
 
NC_014165  Tbis_1609  PaaX family transcriptional regulator  26.23 
 
 
258 aa  75.9  7e-13  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_4899  transcriptional regulator, PaaX family  27.34 
 
 
276 aa  74.3  2e-12  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.425131  normal 
 
 
-
 
NC_008044  TM1040_0436  PaaX-like  28.22 
 
 
301 aa  73.9  3e-12  Ruegeria sp. TM1040  Bacteria  normal  normal  0.581976 
 
 
-
 
NC_008699  Noca_1206  PaaX domain-containing protein, C- domain  26.8 
 
 
258 aa  73.6  4e-12  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_0588  transcriptional regulator, PaaX family  26.72 
 
 
276 aa  70.1  4e-11  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_5523  transcriptional regulator, PaaX family  27.2 
 
 
267 aa  68.6  1e-10  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.543092 
 
 
-
 
NC_013530  Xcel_0309  transcriptional regulator, PaaX family  27.98 
 
 
302 aa  59.7  5e-08  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_0659  PaaX-like  28.74 
 
 
265 aa  58.9  1e-07  Jannaschia sp. CCS1  Bacteria  normal  0.702789  normal 
 
 
-
 
NC_008146  Mmcs_0977  PaaX-like protein  28.64 
 
 
243 aa  57.8  2e-07  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0995  PaaX domain-containing protein, C- domain  28.64 
 
 
243 aa  57.8  2e-07  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_1005  PaaX domain-containing protein, C- domain  28.64 
 
 
243 aa  57.8  2e-07  Mycobacterium sp. JLS  Bacteria  normal  normal  0.457167 
 
 
-
 
NC_009565  TBFG_10688  hypothetical protein  26.73 
 
 
240 aa  56.2  6e-07  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_1271  PaaX domain-containing protein, C- domain  28.44 
 
 
237 aa  56.2  6e-07  Mycobacterium vanbaalenii PYR-1  Bacteria  decreased coverage  0.00141132  normal 
 
 
-
 
NC_013441  Gbro_4285  PaaX domain protein protein domain protein  28.71 
 
 
244 aa  53.9  3e-06  Gordonia bronchialis DSM 43247  Bacteria  normal  0.246767  n/a   
 
 
-
 
NC_009338  Mflv_5085  PaaX domain-containing protein, C- domain  29.63 
 
 
244 aa  53.9  3e-06  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.706044 
 
 
-
 
NC_014151  Cfla_0289  transcriptional regulator, PaaX family  24.71 
 
 
280 aa  51.2  2e-05  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.010887  hitchhiker  7.84974e-05 
 
 
-
 
NC_014158  Tpau_3784  putative transcriptional regulator, PaaX family  29.8 
 
 
277 aa  49.3  7e-05  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_2025  transcriptional regulator, PaaX family  25 
 
 
306 aa  48.9  9e-05  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
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