More than 300 homologs were found in PanDaTox collection
for query gene BBta_2539 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_2539  putative ABC transporter, substrate binding protein  100 
 
 
437 aa  883    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_3459  extracellular solute-binding protein family 1  46.87 
 
 
458 aa  347  3e-94  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.725469  normal 
 
 
-
 
NC_008146  Mmcs_0883  twin-arginine translocation pathway signal  44.2 
 
 
450 aa  317  2e-85  Mycobacterium sp. MCS  Bacteria  normal  0.767617  n/a   
 
 
-
 
NC_008705  Mkms_0900  extracellular solute-binding protein  44.2 
 
 
450 aa  317  2e-85  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_0889  extracellular solute-binding protein  44.2 
 
 
450 aa  317  2e-85  Mycobacterium sp. JLS  Bacteria  normal  normal  0.112478 
 
 
-
 
NC_011369  Rleg2_3121  extracellular solute-binding protein family 1  26.85 
 
 
412 aa  123  8e-27  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3393  extracellular solute-binding protein family 1  26.35 
 
 
412 aa  122  9.999999999999999e-27  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.205631 
 
 
-
 
NC_010159  YpAngola_A2082  carbohydrate ABC transporter periplasmic-binding protein  26.8 
 
 
422 aa  120  6e-26  Yersinia pestis Angola  Bacteria  normal  0.890991  normal  0.0137332 
 
 
-
 
NC_010465  YPK_2280  extracellular solute-binding protein  26.8 
 
 
422 aa  120  7e-26  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_2172  carbohydrate ABC transporter periplasmic-binding protein  27.05 
 
 
422 aa  119  9.999999999999999e-26  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.00849198  n/a   
 
 
-
 
NC_009620  Smed_4557  extracellular solute-binding protein  27.34 
 
 
412 aa  117  3.9999999999999997e-25  Sinorhizobium medicae WSM419  Bacteria  normal  0.302395  normal 
 
 
-
 
NC_009667  Oant_0361  extracellular solute-binding protein  25.9 
 
 
444 aa  102  1e-20  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.678366  n/a   
 
 
-
 
NC_009952  Dshi_0547  ABC-type sugar / sn-glycerol 3-phosphate transport protein  24.66 
 
 
447 aa  100  4e-20  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_2297  extracellular solute-binding protein  24.6 
 
 
416 aa  97.4  4e-19  Serratia proteamaculans 568  Bacteria  normal  0.33558  normal 
 
 
-
 
NC_014212  Mesil_3055  extracellular solute-binding protein family 1  24.17 
 
 
449 aa  93.6  6e-18  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_19900  extracellular solute-binding protein family 1  24.52 
 
 
415 aa  93.2  9e-18  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_5468  extracellular solute-binding protein family 1  25.22 
 
 
442 aa  92.4  1e-17  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.303073 
 
 
-
 
NC_009718  Fnod_0450  extracellular solute-binding protein  28.57 
 
 
414 aa  92.8  1e-17  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  0.308403  n/a   
 
 
-
 
NC_011899  Hore_03340  extracellular solute-binding protein family 1  25.53 
 
 
439 aa  91.7  3e-17  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_012792  Vapar_5703  extracellular solute-binding protein family 1  23.8 
 
 
455 aa  91.7  3e-17  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_4940  extracellular solute-binding protein family 1  23.59 
 
 
484 aa  90.9  4e-17  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0305  extracellular solute-binding protein  26.29 
 
 
428 aa  90.5  5e-17  Petrotoga mobilis SJ95  Bacteria  normal  0.937006  n/a   
 
 
-
 
NC_012848  Rleg_5198  extracellular solute-binding protein family 1  26.63 
 
 
442 aa  89.4  1e-16  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.06332 
 
 
-
 
NC_007643  Rru_A1262  extracellular solute-binding protein  23.9 
 
 
424 aa  87  5e-16  Rhodospirillum rubrum ATCC 11170  Bacteria  decreased coverage  0.00529057  n/a   
 
 
-
 
NC_013131  Caci_2622  extracellular solute-binding protein family 1  24.64 
 
 
437 aa  85.9  0.000000000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0574924  normal  0.833644 
 
 
-
 
NC_009486  Tpet_0954  extracellular solute-binding protein  28.26 
 
 
411 aa  86.3  0.000000000000001  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0970  extracellular solute-binding protein  28.26 
 
 
411 aa  85.9  0.000000000000001  Thermotoga sp. RQ2  Bacteria  hitchhiker  0.000309876  n/a   
 
 
-
 
NC_007963  Csal_0633  extracellular solute-binding protein  24.44 
 
 
436 aa  85.5  0.000000000000002  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.131479  n/a   
 
 
-
 
NC_009484  Acry_1658  extracellular solute-binding protein  23.03 
 
 
449 aa  85.1  0.000000000000002  Acidiphilium cryptum JF-5  Bacteria  normal  0.521221  n/a   
 
 
-
 
NC_009484  Acry_0459  extracellular solute-binding protein  26.68 
 
 
436 aa  84  0.000000000000005  Acidiphilium cryptum JF-5  Bacteria  normal  0.420805  n/a   
 
 
-
 
NC_012850  Rleg_2286  extracellular solute-binding protein family 1  23.85 
 
 
484 aa  84  0.000000000000006  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.322369 
 
 
-
 
NC_009636  Smed_2696  extracellular solute-binding protein  26.82 
 
 
498 aa  84  0.000000000000006  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_0062  extracellular solute-binding protein  26.13 
 
 
436 aa  83.2  0.000000000000008  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2524  extracellular solute-binding protein family 1  27.97 
 
 
483 aa  83.2  0.000000000000009  Thermobaculum terrenum ATCC BAA-798  Bacteria  decreased coverage  0.00000000331289  n/a   
 
 
-
 
NC_013757  Gobs_2796  extracellular solute-binding protein family 1  24.17 
 
 
468 aa  82.8  0.00000000000001  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_0431  extracellular solute-binding protein  25.93 
 
 
435 aa  82.8  0.00000000000001  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_1756  ABC transporter substrate-binding protein  25.57 
 
 
439 aa  82.8  0.00000000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.887651  normal  0.574192 
 
 
-
 
NC_011661  Dtur_1743  extracellular solute-binding protein family 1  22.25 
 
 
447 aa  82  0.00000000000002  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2610  extracellular solute-binding protein  23.9 
 
 
477 aa  82  0.00000000000002  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008010  Dgeo_2870  extracellular solute-binding protein  24.25 
 
 
447 aa  82  0.00000000000002  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_2058  extracellular solute-binding protein family 1  26.04 
 
 
435 aa  82.4  0.00000000000002  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.617385 
 
 
-
 
NC_004578  PSPTO_0364  sugar ABC transporter, periplasmic sugar-binding protein, putative  26.61 
 
 
438 aa  81.3  0.00000000000003  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0915  putative ABC transporter, periplasmic binding protein  25.84 
 
 
443 aa  81.6  0.00000000000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.779259 
 
 
-
 
NC_012912  Dd1591_3240  extracellular solute-binding protein family 1  25.27 
 
 
431 aa  80.5  0.00000000000006  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0476  ABC transporter, substrate-binding protein  25.2 
 
 
427 aa  80.1  0.00000000000007  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_3999  extracellular solute-binding protein family 1  24.5 
 
 
452 aa  79  0.0000000000001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.220113  normal  0.250177 
 
 
-
 
NC_011368  Rleg2_4978  extracellular solute-binding protein family 1  24.15 
 
 
437 aa  79.3  0.0000000000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.346425  normal 
 
 
-
 
NC_009049  Rsph17029_1727  extracellular solute-binding protein  24.55 
 
 
436 aa  79.3  0.0000000000001  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_6665  extracellular solute-binding protein  26.35 
 
 
423 aa  78.2  0.0000000000003  Burkholderia phymatum STM815  Bacteria  normal  0.99524  normal 
 
 
-
 
NC_007493  RSP_0091  ABC sorbitol/mannitol transporter, periplasmic binding protein  24.55 
 
 
436 aa  77.8  0.0000000000004  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.126585  n/a   
 
 
-
 
NC_010580  Bind_3793  extracellular solute-binding protein  26.87 
 
 
437 aa  77.4  0.0000000000004  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.8374  normal  0.742912 
 
 
-
 
NC_008699  Noca_0869  extracellular solute-binding protein  23.08 
 
 
444 aa  77.4  0.0000000000004  Nocardioides sp. JS614  Bacteria  normal  0.509231  n/a   
 
 
-
 
NC_013411  GYMC61_2959  extracellular solute-binding protein family 1  25.36 
 
 
437 aa  77.4  0.0000000000005  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_014212  Mesil_2057  extracellular solute-binding protein family 1  28.71 
 
 
421 aa  76.6  0.0000000000007  Meiothermus silvanus DSM 9946  Bacteria  normal  0.112802  normal  0.296802 
 
 
-
 
NC_014212  Mesil_0158  extracellular solute-binding protein family 1  26.49 
 
 
435 aa  77  0.0000000000007  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.317406 
 
 
-
 
NC_007005  Psyr_4812  extracellular solute-binding protein  25.79 
 
 
438 aa  76.3  0.0000000000009  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_1390  extracellular solute-binding protein  25.27 
 
 
444 aa  76.3  0.0000000000009  Jannaschia sp. CCS1  Bacteria  decreased coverage  0.00129811  normal  0.103249 
 
 
-
 
NC_008010  Dgeo_2821  extracellular solute-binding protein  23.74 
 
 
428 aa  76.3  0.000000000001  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.858803  n/a   
 
 
-
 
NC_012880  Dd703_3168  extracellular solute-binding protein family 1  26.39 
 
 
419 aa  75.9  0.000000000001  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B3065  ABC sugar transporter, periplasmic ligand binding protein  26.06 
 
 
421 aa  75.1  0.000000000002  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_014150  Bmur_1088  extracellular solute-binding protein family 1  23.91 
 
 
414 aa  75.5  0.000000000002  Brachyspira murdochii DSM 12563  Bacteria  hitchhiker  0.00683834  n/a   
 
 
-
 
NC_013525  Tter_0829  extracellular solute-binding protein family 1  25.15 
 
 
504 aa  75.1  0.000000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010003  Pmob_0473  extracellular solute-binding protein  26.26 
 
 
420 aa  74.7  0.000000000003  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_1681  extracellular solute-binding protein  23.94 
 
 
436 aa  74.7  0.000000000003  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.901925  normal 
 
 
-
 
NC_010483  TRQ2_0671  extracellular solute-binding protein  22.28 
 
 
436 aa  74.3  0.000000000004  Thermotoga sp. RQ2  Bacteria  normal  0.687145  n/a   
 
 
-
 
NC_009654  Mmwyl1_0375  extracellular solute-binding protein  25 
 
 
574 aa  74.3  0.000000000004  Marinomonas sp. MWYL1  Bacteria  normal  0.812044  normal  0.244045 
 
 
-
 
NC_009620  Smed_3812  extracellular solute-binding protein  24.49 
 
 
423 aa  73.9  0.000000000005  Sinorhizobium medicae WSM419  Bacteria  normal  0.353807  normal 
 
 
-
 
NC_010524  Lcho_0889  extracellular solute-binding protein  25.48 
 
 
435 aa  73.9  0.000000000005  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008687  Pden_4181  extracellular solute-binding protein  25.89 
 
 
435 aa  73.9  0.000000000005  Paracoccus denitrificans PD1222  Bacteria  hitchhiker  0.000770865  normal  0.668736 
 
 
-
 
NC_013946  Mrub_0791  extracellular solute-binding protein family 1  27.51 
 
 
399 aa  73.6  0.000000000007  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.418273 
 
 
-
 
NC_011886  Achl_1711  extracellular solute-binding protein family 1  25.98 
 
 
450 aa  73.6  0.000000000007  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.827618 
 
 
-
 
NC_008699  Noca_4632  extracellular solute-binding protein  28.85 
 
 
419 aa  72.8  0.00000000001  Nocardioides sp. JS614  Bacteria  normal  0.448727  n/a   
 
 
-
 
NC_012669  Bcav_0310  extracellular solute-binding protein family 1  26.61 
 
 
443 aa  72.8  0.00000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3752  extracellular solute-binding protein family 1  24.01 
 
 
436 aa  72.8  0.00000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.561914  normal 
 
 
-
 
NC_010508  Bcenmc03_2619  extracellular solute-binding protein  25.91 
 
 
441 aa  71.6  0.00000000002  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.925096  normal 
 
 
-
 
NC_007510  Bcep18194_A5926  ABC sugar transporter, periplasmic ligand binding protein  25.91 
 
 
441 aa  72.4  0.00000000002  Burkholderia sp. 383  Bacteria  normal  0.517551  normal 
 
 
-
 
NC_013946  Mrub_2535  extracellular solute-binding protein family 1  28.29 
 
 
418 aa  72.4  0.00000000002  Meiothermus ruber DSM 1279  Bacteria  normal  0.105932  normal 
 
 
-
 
NC_007908  Rfer_0954  extracellular solute-binding protein  22.41 
 
 
397 aa  72  0.00000000002  Rhodoferax ferrireducens T118  Bacteria  normal  0.233769  n/a   
 
 
-
 
NC_008060  Bcen_1985  extracellular solute-binding protein  25.91 
 
 
441 aa  71.6  0.00000000002  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0378619  n/a   
 
 
-
 
NC_010551  BamMC406_2511  extracellular solute-binding protein  25.76 
 
 
441 aa  72  0.00000000002  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0464819  normal  0.359234 
 
 
-
 
NC_008390  Bamb_2643  extracellular solute-binding protein  25.76 
 
 
441 aa  72  0.00000000002  Burkholderia ambifaria AMMD  Bacteria  normal  0.0222782  n/a   
 
 
-
 
NC_008542  Bcen2424_2595  extracellular solute-binding protein  25.91 
 
 
441 aa  71.6  0.00000000002  Burkholderia cenocepacia HI2424  Bacteria  normal  0.13364  n/a   
 
 
-
 
NC_012669  Bcav_0572  extracellular solute-binding protein family 1  23.82 
 
 
470 aa  72.4  0.00000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_006348  BMA0333  maltose/mannitol ABC transporter, periplasmic maltose/mannitol-binding protein, putative  25.34 
 
 
442 aa  71.6  0.00000000003  Burkholderia mallei ATCC 23344  Bacteria  decreased coverage  0.00410857  n/a   
 
 
-
 
NC_007005  Psyr_2440  extracellular solute-binding protein  24.01 
 
 
440 aa  71.2  0.00000000003  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0811647  decreased coverage  0.000336324 
 
 
-
 
NC_007434  BURPS1710b_1034  extracellular solute-binding protein  25.34 
 
 
442 aa  71.6  0.00000000003  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0631  putative sorbitol/mannitol ABC transporter, periplasmic sorbitol/mannitol-binding protein  25.34 
 
 
442 aa  71.6  0.00000000003  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2465  putative sorbitol/mannitol ABC transporter, periplasmic sorbitol/mannitol-binding protein  25.34 
 
 
442 aa  71.6  0.00000000003  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_0872  putative sorbitol/mannitol ABC transporter, periplasmic sorbitol/mannitol-binding protein  25.34 
 
 
442 aa  71.6  0.00000000003  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0876  putative sorbitol/mannitol ABC transporter, periplasmic sorbitol/mannitol-binding protein  25.34 
 
 
442 aa  71.6  0.00000000003  Burkholderia pseudomallei 1106a  Bacteria  normal  0.0755942  n/a   
 
 
-
 
NC_009080  BMA10247_0079  putative sorbitol/mannitol ABC transporter, periplasmic sorbitol/mannitol-binding protein  25.34 
 
 
442 aa  71.6  0.00000000003  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_5309  extracellular solute-binding protein family 1  25.62 
 
 
447 aa  71.2  0.00000000004  Actinosynnema mirum DSM 43827  Bacteria  normal  0.574903  n/a   
 
 
-
 
NC_007951  Bxe_A0720  ABC sugar transporter, periplasmic ligand binding protein  25.14 
 
 
440 aa  71.2  0.00000000004  Burkholderia xenovorans LB400  Bacteria  decreased coverage  0.000000241977  normal 
 
 
-
 
NC_009485  BBta_7822  putative ABC-type sugar transport system, periplasmic component  25.42 
 
 
486 aa  71.2  0.00000000004  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_0490  extracellular solute-binding protein  25.2 
 
 
440 aa  70.5  0.00000000005  Burkholderia phymatum STM815  Bacteria  hitchhiker  0.000283806  hitchhiker  0.00214005 
 
 
-
 
NC_009767  Rcas_0516  extracellular solute-binding protein  28.42 
 
 
488 aa  70.9  0.00000000005  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_16190  extracellular solute-binding protein family 1  23.02 
 
 
401 aa  70.9  0.00000000005  Halothermothrix orenii H 168  Bacteria  decreased coverage  0.00305219  n/a   
 
 
-
 
NC_010681  Bphyt_3246  extracellular solute-binding protein family 1  25.21 
 
 
440 aa  70.5  0.00000000006  Burkholderia phytofirmans PsJN  Bacteria  decreased coverage  0.00178427  normal  0.716937 
 
 
-
 
NC_010084  Bmul_0702  extracellular solute-binding protein  26.18 
 
 
440 aa  70.1  0.00000000007  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.812706  normal  0.378032 
 
 
-
 
NC_010003  Pmob_0954  extracellular solute-binding protein  26.09 
 
 
399 aa  70.1  0.00000000008  Petrotoga mobilis SJ95  Bacteria  normal  0.0450213  n/a   
 
 
-
 
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