50 homologs were found in PanDaTox collection
for query gene BBta_1960 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_1960  putative urease accessory protein UreF  100 
 
 
223 aa  434  1e-121  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.702591  normal 
 
 
-
 
NC_010510  Mrad2831_6191  urease accessory protein UreF  50.66 
 
 
227 aa  214  7e-55  Methylobacterium radiotolerans JCM 2831  Bacteria  decreased coverage  0.00827459  normal 
 
 
-
 
NC_010172  Mext_1195  urease accessory protein UreF  53.98 
 
 
226 aa  198  6e-50  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.110316 
 
 
-
 
NC_011757  Mchl_1355  Urease accessory protein UreF  53.1 
 
 
226 aa  195  5e-49  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1134  Urease accessory protein UreF  52.21 
 
 
226 aa  190  1e-47  Methylobacterium populi BJ001  Bacteria  normal  0.348852  normal 
 
 
-
 
NC_004578  PSPTO_2412  urease accessory protein UreF  38.36 
 
 
243 aa  148  8e-35  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2199  urease accessory protein UreF  39.26 
 
 
243 aa  144  9e-34  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0590668  normal 
 
 
-
 
NC_009485  BBta_4444  urease accessory protein UreF  42.25 
 
 
225 aa  130  2e-29  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.8214 
 
 
-
 
NC_011729  PCC7424_4416  Urease accessory protein UreF  29.65 
 
 
232 aa  94.4  1e-18  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008312  Tery_0751  urease accessory protein UreF  29.49 
 
 
232 aa  91.3  1e-17  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_2716  urease accessory protein UreF  33.78 
 
 
229 aa  82.4  5e-15  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_1081  urease accessory protein UreF  28.44 
 
 
228 aa  72.8  4e-12  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1135  urease accessory protein UreF  28.44 
 
 
228 aa  72.4  5e-12  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3558  urease accessory protein  28.44 
 
 
228 aa  72.4  5e-12  Yersinia pestis Angola  Bacteria  normal  0.45506  normal  0.0231315 
 
 
-
 
NC_010681  Bphyt_0061  Urease accessory protein UreF  34.5 
 
 
239 aa  70.9  1e-11  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_013743  Htur_1553  Urease accessory protein UreF  30.8 
 
 
266 aa  70.1  3e-11  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_009338  Mflv_1681  urease accessory protein UreF  29.09 
 
 
231 aa  68.9  6e-11  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.591777  normal 
 
 
-
 
NC_004310  BR1360  urease accessory protein UreF, putative  29.61 
 
 
243 aa  67  2e-10  Brucella suis 1330  Bacteria  normal  0.87156  n/a   
 
 
-
 
NC_011757  Mchl_1465  Urease accessory protein UreF  30.13 
 
 
240 aa  64.3  1e-09  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1303  urease accessory protein UreF  28.07 
 
 
240 aa  63.9  2e-09  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_013171  Apre_0722  Urease accessory protein UreF  22.97 
 
 
240 aa  62  6e-09  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_5118  Urease accessory protein UreF  29.96 
 
 
240 aa  59.7  3e-08  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011374  UUR10_0475  urease accessory protein UreF  24.35 
 
 
235 aa  58.9  6e-08  Ureaplasma urealyticum serovar 10 str. ATCC 33699  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0685  urease accessory protein UreF  25 
 
 
228 aa  58.2  9e-08  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_4050  hypothetical protein  33.13 
 
 
218 aa  57.8  1e-07  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_009440  Msed_0885  urease accessory protein UreF  24.55 
 
 
199 aa  57  2e-07  Metallosphaera sedula DSM 5348  Archaea  normal  normal 
 
 
-
 
NC_011145  AnaeK_0974  hypothetical protein  34.91 
 
 
218 aa  56.2  4e-07  Anaeromyxobacter sp. K  Bacteria  normal  0.319857  n/a   
 
 
-
 
NC_013510  Tcur_2064  Urease accessory protein UreF  32.58 
 
 
233 aa  52.4  6e-06  Thermomonospora curvata DSM 43183  Bacteria  decreased coverage  1.68254e-06  n/a   
 
 
-
 
NC_009049  Rsph17029_1947  urease accessory protein UreF  31.48 
 
 
210 aa  52  7e-06  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0218708  normal 
 
 
-
 
NC_003909  BCE_3660  urease accessory protein UreF  21.93 
 
 
232 aa  50.8  2e-05  Bacillus cereus ATCC 10987  Bacteria  normal  0.098957  n/a   
 
 
-
 
NC_009428  Rsph17025_0991  urease accessory protein UreF  28.91 
 
 
210 aa  50.4  2e-05  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_1476  Urease accessory protein UreF  29.33 
 
 
228 aa  50.8  2e-05  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0566307  normal  0.716543 
 
 
-
 
NC_002976  SERP1873  urease accessory protein UreF  21.27 
 
 
229 aa  49.3  5e-05  Staphylococcus epidermidis RP62A  Bacteria  normal  0.674114  n/a   
 
 
-
 
NC_007493  RSP_0303  urease accessory protein UreF  31.31 
 
 
210 aa  48.5  8e-05  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_6442  putative urease accessory protein  34.23 
 
 
226 aa  48.1  0.0001  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0548041  normal  0.22219 
 
 
-
 
NC_008532  STER_0327  urease accessory protein  22.42 
 
 
237 aa  47.4  0.0002  Streptococcus thermophilus LMD-9  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_1765  urease accessory protein UreF  25.88 
 
 
227 aa  46.6  0.0003  Methylobacillus flagellatus KT  Bacteria  normal  0.858852  normal 
 
 
-
 
NC_007347  Reut_A0997  urease accessory protein UreF  24.23 
 
 
230 aa  45.4  0.0007  Ralstonia eutropha JMP134  Bacteria  normal  0.371175  n/a   
 
 
-
 
NC_009077  Mjls_2831  urease accessory protein UreF  33.55 
 
 
211 aa  45.1  0.001  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_012803  Mlut_03460  urease accessory protein UreF  24.42 
 
 
238 aa  44.3  0.001  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_2316  urease accessory protein UreF  20.36 
 
 
229 aa  43.9  0.002  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.495239  n/a   
 
 
-
 
NC_009632  SaurJH1_2359  urease accessory protein UreF  20.36 
 
 
229 aa  43.9  0.002  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4833  urease accessory protein UreF  22.02 
 
 
228 aa  43.9  0.002  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3407  urease accessory protein UreF  27.69 
 
 
225 aa  43.1  0.004  Rhodoferax ferrireducens T118  Bacteria  normal  0.195199  n/a   
 
 
-
 
NC_007614  Nmul_A1243  urease accessory protein UreF  27.44 
 
 
226 aa  42.4  0.006  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4247  Urease accessory protein UreF  29.78 
 
 
223 aa  42.4  0.006  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_2420  urease accessory protein UreF  26.17 
 
 
224 aa  42.4  0.006  Pseudomonas putida W619  Bacteria  normal  0.0454768  normal 
 
 
-
 
NC_013440  Hoch_1702  Urease accessory protein UreF  26.98 
 
 
225 aa  42  0.007  Haliangium ochraceum DSM 14365  Bacteria  normal  hitchhiker  0.000278425 
 
 
-
 
NC_008146  Mmcs_2804  urease accessory protein UreF  32.89 
 
 
211 aa  41.6  0.01  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_2848  urease accessory protein UreF  32.89 
 
 
211 aa  41.6  0.01  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
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