More than 300 homologs were found in PanDaTox collection
for query gene Avi_6091 on replicon NC_011988
Organism: Agrobacterium vitis S4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011988  Avi_6091  ABC transporter membrane spanning protein (polyamine)  100 
 
 
266 aa  511  1e-144  Agrobacterium vitis S4  Bacteria  normal  0.417915  n/a   
 
 
-
 
NC_012854  Rleg_6542  binding-protein-dependent transport systems inner membrane component  80.38 
 
 
266 aa  411  1e-114  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.208097 
 
 
-
 
NC_009621  Smed_6247  binding-protein-dependent transport systems inner membrane component  78.57 
 
 
266 aa  390  1e-107  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.487966 
 
 
-
 
NC_011368  Rleg2_5591  binding-protein-dependent transport systems inner membrane component  80 
 
 
266 aa  385  1e-106  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_007434  BURPS1710b_2209  putrescine ABC transporter permease  65.27 
 
 
264 aa  324  1e-87  Burkholderia pseudomallei 1710b  Bacteria  normal  0.052298  n/a   
 
 
-
 
NC_010087  Bmul_6113  binding-protein-dependent transport systems inner membrane component  66.79 
 
 
266 aa  313  1.9999999999999998e-84  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.575148  normal 
 
 
-
 
NC_009439  Pmen_3449  binding-protein-dependent transport systems inner membrane component  57.03 
 
 
269 aa  302  3.0000000000000004e-81  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.413551 
 
 
-
 
NC_010501  PputW619_1933  binding-protein-dependent transport systems inner membrane component  57.03 
 
 
269 aa  301  5.000000000000001e-81  Pseudomonas putida W619  Bacteria  normal  normal  0.0161656 
 
 
-
 
NC_002947  PP_3816  binding-protein-dependent transport systems inner membrane component  56.65 
 
 
269 aa  301  6.000000000000001e-81  Pseudomonas putida KT2440  Bacteria  decreased coverage  0.0037178  normal  0.4746 
 
 
-
 
NC_009512  Pput_1953  binding-protein-dependent transport systems inner membrane component  56.65 
 
 
268 aa  301  8.000000000000001e-81  Pseudomonas putida F1  Bacteria  normal  0.911704  normal 
 
 
-
 
NC_010322  PputGB1_2089  binding-protein-dependent transport systems inner membrane component  56.27 
 
 
268 aa  300  1e-80  Pseudomonas putida GB-1  Bacteria  normal  0.217099  normal 
 
 
-
 
NC_007492  Pfl01_3243  binding-protein dependent transport system inner membrane protein  55.89 
 
 
269 aa  291  8e-78  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.796458 
 
 
-
 
NC_009654  Mmwyl1_2486  binding-protein-dependent transport systems inner membrane component  57.95 
 
 
268 aa  290  2e-77  Marinomonas sp. MWYL1  Bacteria  normal  0.0758947  normal 
 
 
-
 
NC_004578  PSPTO_2665  spermidine/putrescine ABC transporter, permease protein, putative  58.26 
 
 
271 aa  283  2.0000000000000002e-75  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0357719  n/a   
 
 
-
 
NC_007005  Psyr_2399  binding-protein dependent transport system inner membrane protein  58.01 
 
 
271 aa  283  2.0000000000000002e-75  Pseudomonas syringae pv. syringae B728a  Bacteria  decreased coverage  0.00651767  normal  0.388943 
 
 
-
 
NC_011004  Rpal_5130  binding-protein-dependent transport systems inner membrane component  40.16 
 
 
596 aa  188  1e-46  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2228  binding-protein-dependent transport systems inner membrane component  39.22 
 
 
272 aa  184  1.0000000000000001e-45  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_2541  binding-protein-dependent transport systems inner membrane component  39.22 
 
 
272 aa  184  1.0000000000000001e-45  Pectobacterium wasabiae WPP163  Bacteria  normal  0.180027  n/a   
 
 
-
 
NC_010159  YpAngola_A3109  spermidine/putrescine ABC transporter permease  38.33 
 
 
282 aa  180  2e-44  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_1338  binding-protein-dependent transport systems inner membrane component  38.33 
 
 
282 aa  180  2e-44  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1221  spermidine/putrescine ABC transporter, permease protein  38.33 
 
 
282 aa  181  2e-44  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1588  binding-protein-dependent transporter inner membrane component  42.4 
 
 
279 aa  179  4.999999999999999e-44  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.148375 
 
 
-
 
NC_009439  Pmen_4000  binding-protein-dependent transport systems inner membrane component  38.59 
 
 
275 aa  178  9e-44  Pseudomonas mendocina ymp  Bacteria  normal  0.360042  normal 
 
 
-
 
NC_008688  Pden_4602  binding-protein-dependent transport systems inner membrane component  40.74 
 
 
591 aa  177  1e-43  Paracoccus denitrificans PD1222  Bacteria  normal  0.621124  normal 
 
 
-
 
NC_008786  Veis_4689  binding-protein-dependent transport systems inner membrane component  39.5 
 
 
276 aa  177  1e-43  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.363302  normal 
 
 
-
 
NC_009439  Pmen_4203  binding-protein-dependent transport systems inner membrane component  38.25 
 
 
284 aa  176  4e-43  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_0448  binding-protein-dependent transport systems inner membrane component  39.67 
 
 
275 aa  175  6e-43  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1871  binding-protein-dependent transport systems inner membrane component  40.47 
 
 
278 aa  175  6e-43  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_4294  binding-protein-dependent transport systems inner membrane component  37.25 
 
 
279 aa  174  1.9999999999999998e-42  Burkholderia ambifaria AMMD  Bacteria  normal  0.144254  normal 
 
 
-
 
NC_010623  Bphy_4324  binding-protein-dependent transport systems inner membrane component  39.59 
 
 
279 aa  173  2.9999999999999996e-42  Burkholderia phymatum STM815  Bacteria  normal  normal  0.644272 
 
 
-
 
NC_004311  BRA1105  polyamine ABC transporter, permease protein  37.4 
 
 
267 aa  172  6.999999999999999e-42  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A2045  binding-protein dependent transport system inner membrane protein  38.02 
 
 
275 aa  172  6.999999999999999e-42  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.586316  n/a   
 
 
-
 
NC_011662  Tmz1t_0427  binding-protein-dependent transport systems inner membrane component  38.67 
 
 
274 aa  171  1e-41  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_2380  binding-protein-dependent transport systems inner membrane component  37.25 
 
 
279 aa  171  1e-41  Burkholderia phymatum STM815  Bacteria  normal  0.576146  normal 
 
 
-
 
NC_010676  Bphyt_6885  binding-protein-dependent transport systems inner membrane component  37.96 
 
 
279 aa  170  2e-41  Burkholderia phytofirmans PsJN  Bacteria  normal  0.471707  normal  0.190136 
 
 
-
 
NC_007952  Bxe_B2930  spermidine/putrescine ABC transporter inner membrane protein  38.37 
 
 
279 aa  171  2e-41  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_0569  binding-protein-dependent transport systems inner membrane component  40.43 
 
 
268 aa  169  3e-41  Conexibacter woesei DSM 14684  Bacteria  normal  0.0474626  normal 
 
 
-
 
NC_009620  Smed_3736  binding-protein-dependent transport systems inner membrane component  37.45 
 
 
276 aa  169  4e-41  Sinorhizobium medicae WSM419  Bacteria  normal  0.282406  normal 
 
 
-
 
NC_009668  Oant_4153  binding-protein-dependent transport systems inner membrane component  38.16 
 
 
263 aa  166  2.9999999999999998e-40  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.829399  n/a   
 
 
-
 
NC_008044  TM1040_2990  binding-protein-dependent transport systems inner membrane component  35.52 
 
 
391 aa  166  2.9999999999999998e-40  Ruegeria sp. TM1040  Bacteria  normal  0.0689786  normal  0.478679 
 
 
-
 
NC_009075  BURPS668_A2498  putative polyamine ABC transporter, permease protein  37.55 
 
 
289 aa  165  5.9999999999999996e-40  Burkholderia pseudomallei 668  Bacteria  normal  0.633965  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2359  putative polyamine ABC transporter, permease protein  37.55 
 
 
289 aa  165  5.9999999999999996e-40  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0812  polyamine ABC transporter, permease protein  37.55 
 
 
279 aa  165  8e-40  Burkholderia pseudomallei 1710b  Bacteria  normal  0.610714  n/a   
 
 
-
 
NC_007492  Pfl01_5122  binding-protein dependent transport system inner membrane protein  37 
 
 
274 aa  164  1.0000000000000001e-39  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.026759  normal  0.638371 
 
 
-
 
NC_011982  Avi_8304  ABC transporter  37.45 
 
 
265 aa  164  1.0000000000000001e-39  Agrobacterium vitis S4  Bacteria  normal  0.0178234  n/a   
 
 
-
 
NC_008688  Pden_5050  binding-protein-dependent transport systems inner membrane component  37.92 
 
 
262 aa  164  1.0000000000000001e-39  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_3856  binding-protein-dependent transport systems inner membrane component  39.39 
 
 
270 aa  164  1.0000000000000001e-39  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_0414  binding-protein-dependent transport systems inner membrane component  37 
 
 
275 aa  164  2.0000000000000002e-39  Pseudomonas putida KT2440  Bacteria  normal  0.958357  normal 
 
 
-
 
NC_012880  Dd703_1788  binding-protein-dependent transport systems inner membrane component  37.61 
 
 
275 aa  164  2.0000000000000002e-39  Dickeya dadantii Ech703  Bacteria  normal  0.0709875  n/a   
 
 
-
 
NC_007494  RSP_3393  ABC opine/polyamine transporter, inner membrane subunit  38.36 
 
 
264 aa  163  2.0000000000000002e-39  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.381224  n/a   
 
 
-
 
NC_009050  Rsph17029_3039  binding-protein-dependent transport systems inner membrane component  38.36 
 
 
264 aa  163  2.0000000000000002e-39  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.645477  normal 
 
 
-
 
NC_009512  Pput_0448  binding-protein-dependent transport systems inner membrane component  37 
 
 
275 aa  164  2.0000000000000002e-39  Pseudomonas putida F1  Bacteria  normal  normal  0.439073 
 
 
-
 
NC_009656  PSPA7_0750  ABC transporter permease  38.39 
 
 
276 aa  164  2.0000000000000002e-39  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008688  Pden_4875  binding-protein-dependent transport systems inner membrane component  36.36 
 
 
587 aa  163  3e-39  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.432532 
 
 
-
 
NC_013456  VEA_003666  probable permease of ABC transporter  35.51 
 
 
282 aa  163  3e-39  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_1862  binding-protein-dependent transport systems inner membrane component  39.75 
 
 
272 aa  162  4.0000000000000004e-39  Chelativorans sp. BNC1  Bacteria  normal  0.148364  n/a   
 
 
-
 
NC_008254  Meso_2370  binding-protein-dependent transport systems inner membrane component  36.21 
 
 
274 aa  162  4.0000000000000004e-39  Chelativorans sp. BNC1  Bacteria  normal  0.560014  n/a   
 
 
-
 
NC_009720  Xaut_0865  binding-protein-dependent transport systems inner membrane component  41.05 
 
 
264 aa  162  4.0000000000000004e-39  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_4788  binding-protein-dependent transport systems inner membrane component  37.9 
 
 
275 aa  162  5.0000000000000005e-39  Pseudomonas putida W619  Bacteria  normal  normal  0.776443 
 
 
-
 
NC_010322  PputGB1_0445  binding-protein-dependent transport systems inner membrane component  37.96 
 
 
275 aa  162  5.0000000000000005e-39  Pseudomonas putida GB-1  Bacteria  normal  normal  0.355956 
 
 
-
 
NC_007650  BTH_II0645  polyamine ABC transporter, permease protein  37.14 
 
 
279 aa  162  6e-39  Burkholderia thailandensis E264  Bacteria  normal  0.637437  n/a   
 
 
-
 
NC_008463  PA14_07900  putative permease of ABC transporter  37.91 
 
 
276 aa  162  7e-39  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.00280578 
 
 
-
 
NC_010511  M446_3864  binding-protein-dependent transport systems inner membrane component  40 
 
 
261 aa  161  8.000000000000001e-39  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_5471  binding-protein-dependent transport systems inner membrane component  37.02 
 
 
588 aa  160  1e-38  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_3299  binding-protein-dependent transport systems inner membrane component  37.72 
 
 
278 aa  160  2e-38  Burkholderia ambifaria AMMD  Bacteria  normal  0.735344  normal  0.669781 
 
 
-
 
NC_010087  Bmul_5431  binding-protein-dependent transport systems inner membrane component  38.33 
 
 
278 aa  160  3e-38  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.708074  normal  0.0941502 
 
 
-
 
NC_007511  Bcep18194_B2167  ABC spermidine/putrescine transporter, inner membrane subunit  37.89 
 
 
278 aa  159  3e-38  Burkholderia sp. 383  Bacteria  hitchhiker  0.00407242  normal 
 
 
-
 
NC_010086  Bmul_4662  binding-protein-dependent transport systems inner membrane component  38.33 
 
 
278 aa  160  3e-38  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.445054  normal 
 
 
-
 
NC_010552  BamMC406_3815  binding-protein-dependent transport systems inner membrane component  37.89 
 
 
281 aa  159  4e-38  Burkholderia ambifaria MC40-6  Bacteria  normal  0.723291  normal 
 
 
-
 
NC_010625  Bphy_6578  binding-protein-dependent transport systems inner membrane component  32.35 
 
 
265 aa  159  5e-38  Burkholderia phymatum STM815  Bacteria  normal  0.496226  normal  0.414836 
 
 
-
 
NC_012791  Vapar_4699  binding-protein-dependent transport systems inner membrane component  38.36 
 
 
272 aa  157  2e-37  Variovorax paradoxus S110  Bacteria  normal  0.607966  n/a   
 
 
-
 
NC_007958  RPD_1033  binding-protein-dependent transport systems inner membrane component  39.17 
 
 
550 aa  157  2e-37  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.957073  normal 
 
 
-
 
NC_010515  Bcenmc03_3606  binding-protein-dependent transport systems inner membrane component  37.44 
 
 
281 aa  156  3e-37  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_4445  binding-protein-dependent transport systems inner membrane component  37.44 
 
 
281 aa  156  3e-37  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.140944  n/a   
 
 
-
 
NC_008543  Bcen2424_3921  binding-protein-dependent transport systems inner membrane component  37.44 
 
 
281 aa  156  3e-37  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_2634  Fis family transcriptional regulator  37.73 
 
 
275 aa  155  5.0000000000000005e-37  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_0469  binding-protein-dependent transport systems inner membrane component  37.5 
 
 
261 aa  155  7e-37  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_4042  binding-protein-dependent transport systems inner membrane component  36.55 
 
 
278 aa  154  1e-36  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_6153  binding-protein-dependent transport systems inner membrane component  31.51 
 
 
264 aa  154  2e-36  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_0203  binding-protein-dependent transport systems inner membrane component  35.68 
 
 
265 aa  152  4e-36  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.973641  normal  0.52762 
 
 
-
 
NC_007908  Rfer_0596  binding-protein-dependent transport systems inner membrane component  39.52 
 
 
281 aa  152  5e-36  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008687  Pden_3462  binding-protein-dependent transport systems inner membrane component  31.97 
 
 
317 aa  151  8.999999999999999e-36  Paracoccus denitrificans PD1222  Bacteria  normal  0.397103  normal 
 
 
-
 
NC_008686  Pden_2149  binding-protein-dependent transport systems inner membrane component  31.97 
 
 
317 aa  151  8.999999999999999e-36  Paracoccus denitrificans PD1222  Bacteria  normal  0.964128  normal 
 
 
-
 
NC_011989  Avi_2708  ABC transporter membrane spanning protein (polyamine)  36.21 
 
 
264 aa  151  8.999999999999999e-36  Agrobacterium vitis S4  Bacteria  normal  0.319241  n/a   
 
 
-
 
NC_010627  Bphy_7801  binding-protein-dependent transport systems inner membrane component  33.85 
 
 
284 aa  151  1e-35  Burkholderia phymatum STM815  Bacteria  normal  0.109099  normal 
 
 
-
 
NC_007005  Psyr_4612  binding-protein dependent transport system inner membrane protein  39.66 
 
 
273 aa  149  4e-35  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.950111 
 
 
-
 
NC_009636  Smed_1718  binding-protein-dependent transport systems inner membrane component  37.5 
 
 
261 aa  149  4e-35  Sinorhizobium medicae WSM419  Bacteria  normal  0.367092  normal 
 
 
-
 
NC_004578  PSPTO_0565  polyamine ABC transporter, permease protein  39.34 
 
 
273 aa  149  5e-35  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.903035  n/a   
 
 
-
 
NC_008786  Veis_0786  binding-protein-dependent transport systems inner membrane component  38.06 
 
 
265 aa  148  8e-35  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B1507  ABC spermidine/putrescine transporter, inner membrane subunit  30.28 
 
 
264 aa  148  8e-35  Burkholderia xenovorans LB400  Bacteria  normal  0.375803  normal  0.0420414 
 
 
-
 
NC_007493  RSP_1886  ABC polyamine/opine transporter, inner membrane subunit  32.84 
 
 
302 aa  148  9e-35  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.0261044  n/a   
 
 
-
 
NC_009049  Rsph17029_0533  binding-protein-dependent transport systems inner membrane component  32.84 
 
 
302 aa  148  9e-35  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3714  binding-protein-dependent transport systems inner membrane component  38.49 
 
 
264 aa  148  1.0000000000000001e-34  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.50413  n/a   
 
 
-
 
NC_007948  Bpro_2916  binding-protein-dependent transport systems inner membrane component  35.81 
 
 
274 aa  147  2.0000000000000003e-34  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_1271  binding-protein-dependent transport systems inner membrane component  38.19 
 
 
337 aa  146  3e-34  Jannaschia sp. CCS1  Bacteria  normal  0.494716  normal  0.616088 
 
 
-
 
NC_009428  Rsph17025_0669  binding-protein-dependent transport systems inner membrane component  35.62 
 
 
302 aa  146  3e-34  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.703183  decreased coverage  0.00406326 
 
 
-
 
NC_013739  Cwoe_0815  binding-protein-dependent transport systems inner membrane component  40.08 
 
 
277 aa  145  6e-34  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA0329  spermidine/putrescine ABC transporter, permease protein  38.33 
 
 
258 aa  144  1e-33  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_4105  binding-protein-dependent transport systems inner membrane component  38.39 
 
 
262 aa  144  2e-33  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_008261  CPF_1479  ABC transporter, permease protein  30.33 
 
 
260 aa  144  2e-33  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0195961  n/a   
 
 
-
 
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