More than 300 homologs were found in PanDaTox collection
for query gene Avi_3552 on replicon NC_011989
Organism: Agrobacterium vitis S4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011989  Avi_3552  ABC transporter membrane spanning protein  100 
 
 
285 aa  561  1.0000000000000001e-159  Agrobacterium vitis S4  Bacteria  normal  0.0625026  n/a   
 
 
-
 
NC_011369  Rleg2_1676  binding-protein-dependent transport systems inner membrane component  81.75 
 
 
287 aa  406  1.0000000000000001e-112  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  decreased coverage  0.00381914  normal 
 
 
-
 
NC_012848  Rleg_4665  binding-protein-dependent transport systems inner membrane component  74.56 
 
 
284 aa  399  9.999999999999999e-111  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.65192 
 
 
-
 
NC_007802  Jann_1473  binding-protein-dependent transport systems inner membrane component  54.18 
 
 
283 aa  295  6e-79  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C0801  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  55.29 
 
 
298 aa  280  1e-74  Burkholderia xenovorans LB400  Bacteria  normal  0.0745387  normal 
 
 
-
 
NC_009668  Oant_3871  binding-protein-dependent transport systems inner membrane component  55.6 
 
 
280 aa  276  2e-73  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.208081  n/a   
 
 
-
 
NC_012791  Vapar_5134  binding-protein-dependent transport systems inner membrane component  53.21 
 
 
294 aa  267  1e-70  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_0427  binding-protein-dependent transport systems inner membrane component  59.61 
 
 
279 aa  264  1e-69  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_0891  binding-protein-dependent transport systems inner membrane component  52.21 
 
 
268 aa  260  2e-68  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.223421 
 
 
-
 
NC_007406  Nwi_0333  binding-protein dependent transport system inner membrane protein  57.81 
 
 
278 aa  253  3e-66  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_1382  binding-protein-dependent transport systems inner membrane component  51.45 
 
 
285 aa  252  6e-66  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.13305  normal 
 
 
-
 
NC_008825  Mpe_A3414  ATP-binding protein of ABC transporter  52.96 
 
 
280 aa  248  1e-64  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.24016 
 
 
-
 
NC_012791  Vapar_4760  binding-protein-dependent transport systems inner membrane component  50 
 
 
267 aa  245  6e-64  Variovorax paradoxus S110  Bacteria  normal  0.318809  n/a   
 
 
-
 
NC_007958  RPD_0258  binding-protein-dependent transport systems inner membrane component  57.42 
 
 
274 aa  242  5e-63  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.750925 
 
 
-
 
NC_008312  Tery_1625  binding-protein-dependent transport systems inner membrane component  47.27 
 
 
285 aa  239  2.9999999999999997e-62  Trichodesmium erythraeum IMS101  Bacteria  normal  0.0792607  normal  0.95709 
 
 
-
 
NC_011004  Rpal_0469  binding-protein-dependent transport systems inner membrane component  55.13 
 
 
274 aa  238  5.999999999999999e-62  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.858995  n/a   
 
 
-
 
NC_009485  BBta_1263  ABC transporter permease  49.81 
 
 
262 aa  237  1e-61  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.165267 
 
 
-
 
NC_007925  RPC_0572  binding-protein-dependent transport systems inner membrane component  52.63 
 
 
276 aa  228  8e-59  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_3145  binding-protein-dependent transport systems inner membrane component  55.93 
 
 
298 aa  228  8e-59  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.433007  normal  0.243208 
 
 
-
 
NC_009485  BBta_7480  ABC transporter permease  56.67 
 
 
271 aa  226  3e-58  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.477102  normal  0.131238 
 
 
-
 
NC_010501  PputW619_2588  binding-protein-dependent transport systems inner membrane component  50.19 
 
 
267 aa  224  9e-58  Pseudomonas putida W619  Bacteria  normal  normal  0.417353 
 
 
-
 
NC_007951  Bxe_A2015  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  50 
 
 
252 aa  224  1e-57  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_2038  binding-protein-dependent transport systems inner membrane component  47.97 
 
 
264 aa  222  4.9999999999999996e-57  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.697058  normal  0.743835 
 
 
-
 
NC_002947  PP_3210  ABC transporter, permease protein  50.39 
 
 
267 aa  222  6e-57  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1719  binding-protein-dependent transport systems inner membrane component  47.97 
 
 
264 aa  221  9.999999999999999e-57  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0572  binding-protein-dependent transport systems inner membrane component  57.92 
 
 
274 aa  217  1e-55  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0627389  normal  0.343483 
 
 
-
 
NC_010725  Mpop_1095  binding-protein-dependent transport systems inner membrane component  48.5 
 
 
264 aa  217  1e-55  Methylobacterium populi BJ001  Bacteria  normal  0.0240883  normal  0.166534 
 
 
-
 
NC_011666  Msil_1164  binding-protein-dependent transport systems inner membrane component  54.82 
 
 
260 aa  212  7e-54  Methylocella silvestris BL2  Bacteria  n/a    normal  0.233018 
 
 
-
 
NC_010581  Bind_1091  binding-protein-dependent transport systems inner membrane component  53.11 
 
 
262 aa  201  9.999999999999999e-51  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_009484  Acry_0832  binding-protein-dependent transport systems inner membrane component  48.4 
 
 
254 aa  172  3.9999999999999995e-42  Acidiphilium cryptum JF-5  Bacteria  normal  0.404323  n/a   
 
 
-
 
NC_013739  Cwoe_4254  binding-protein-dependent transport systems inner membrane component  34.55 
 
 
283 aa  150  2e-35  Conexibacter woesei DSM 14684  Bacteria  normal  0.0441349  normal  0.902161 
 
 
-
 
NC_010338  Caul_1260  binding-protein-dependent transport systems inner membrane component  46.43 
 
 
252 aa  149  4e-35  Caulobacter sp. K31  Bacteria  normal  0.21476  normal  0.0147088 
 
 
-
 
NC_012791  Vapar_1862  binding-protein-dependent transport systems inner membrane component  34.47 
 
 
257 aa  139  3.9999999999999997e-32  Variovorax paradoxus S110  Bacteria  normal  0.116723  n/a   
 
 
-
 
NC_008786  Veis_0620  binding-protein-dependent transport systems inner membrane component  36.56 
 
 
254 aa  139  3.9999999999999997e-32  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.63161  normal 
 
 
-
 
NC_014148  Plim_2867  binding-protein-dependent transport systems inner membrane component  32.83 
 
 
277 aa  138  1e-31  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_3753  binding-protein-dependent transport systems inner membrane component  35.15 
 
 
268 aa  137  2e-31  Jannaschia sp. CCS1  Bacteria  normal  0.333865  normal 
 
 
-
 
NC_009921  Franean1_2281  binding-protein-dependent transport systems inner membrane component  34.29 
 
 
281 aa  134  1.9999999999999998e-30  Frankia sp. EAN1pec  Bacteria  normal  0.695693  normal  0.331928 
 
 
-
 
NC_009921  Franean1_3131  binding-protein-dependent transport systems inner membrane component  30.77 
 
 
281 aa  129  5.0000000000000004e-29  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_2033  binding-protein-dependent transport systems inner membrane component  41.01 
 
 
275 aa  129  6e-29  Haliangium ochraceum DSM 14365  Bacteria  normal  0.0253714  normal  0.258175 
 
 
-
 
NC_012669  Bcav_3788  binding-protein-dependent transport systems inner membrane component  35.71 
 
 
317 aa  127  2.0000000000000002e-28  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0255815  normal 
 
 
-
 
NC_009253  Dred_3205  binding-protein-dependent transport systems inner membrane component  32.41 
 
 
265 aa  125  6e-28  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.000457845  n/a   
 
 
-
 
NC_012792  Vapar_6052  binding-protein-dependent transport systems inner membrane component  32.9 
 
 
274 aa  125  1e-27  Variovorax paradoxus S110  Bacteria  normal  0.0454164  n/a   
 
 
-
 
NC_013441  Gbro_0259  binding-protein-dependent transport systems inner membrane component  36.46 
 
 
453 aa  121  9.999999999999999e-27  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_17280  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  34.35 
 
 
325 aa  121  9.999999999999999e-27  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.158115  normal  0.544115 
 
 
-
 
NC_007778  RPB_3118  binding-protein dependent transport system inner membrane protein  32.23 
 
 
284 aa  120  1.9999999999999998e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_1221  binding-protein-dependent transport systems inner membrane component  31.73 
 
 
246 aa  119  3.9999999999999996e-26  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009524  PsycPRwf_1445  binding-protein-dependent transport systems inner membrane component  31.18 
 
 
259 aa  119  3.9999999999999996e-26  Psychrobacter sp. PRwf-1  Bacteria  normal  normal  0.318112 
 
 
-
 
NC_009674  Bcer98_0614  binding-protein-dependent transport systems inner membrane component  31.85 
 
 
250 aa  119  6e-26  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_06840  ABC-type nitrate/sulfonate/bicarbonate transport system permease component  31.69 
 
 
266 aa  119  7e-26  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013457  VEA_000865  hydroxymethylpyrimidine ABC transporter transmembrane component  32.1 
 
 
266 aa  119  7e-26  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3810  binding-protein-dependent transport systems inner membrane component  29.29 
 
 
258 aa  118  9.999999999999999e-26  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.42897 
 
 
-
 
NC_013165  Shel_13670  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  30.96 
 
 
249 aa  117  1.9999999999999998e-25  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_2985  binding-protein-dependent transport systems inner membrane component  32.53 
 
 
273 aa  117  1.9999999999999998e-25  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_3269  binding-protein-dependent transport systems inner membrane component  34.19 
 
 
253 aa  117  1.9999999999999998e-25  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.283078  normal 
 
 
-
 
NC_013946  Mrub_1393  binding-protein-dependent transport systems inner membrane component  29.91 
 
 
254 aa  117  3e-25  Meiothermus ruber DSM 1279  Bacteria  normal  0.302994  normal  0.157809 
 
 
-
 
NC_011725  BCB4264_A0784  putative ABC transporter, permease protein  33.06 
 
 
250 aa  116  3.9999999999999997e-25  Bacillus cereus B4264  Bacteria  normal  0.605831  n/a   
 
 
-
 
NC_011658  BCAH187_A0881  putative ABC transporter, permease protein  32.27 
 
 
251 aa  116  5e-25  Bacillus cereus AH187  Bacteria  hitchhiker  0.00328051  n/a   
 
 
-
 
NC_009669  Oant_4580  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
257 aa  115  6e-25  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_2296  binding-protein-dependent transport systems inner membrane component  33.6 
 
 
250 aa  115  6.9999999999999995e-25  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3093  binding-protein dependent transport system inner membrane protein  33.2 
 
 
259 aa  115  7.999999999999999e-25  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.942666 
 
 
-
 
NC_003909  BCE_0797  ABC transporter, permease protein, putative  32.26 
 
 
250 aa  115  8.999999999999998e-25  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0637  ABC transporter, permease  32.26 
 
 
250 aa  115  1.0000000000000001e-24  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00537874  n/a   
 
 
-
 
NC_006274  BCZK0637  ABC transporter, permease  32.27 
 
 
250 aa  114  1.0000000000000001e-24  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4547  putative ABC transporter, permease protein  32.26 
 
 
251 aa  114  1.0000000000000001e-24  Bacillus cereus G9842  Bacteria  normal  0.113137  normal  0.441246 
 
 
-
 
NC_009654  Mmwyl1_2703  binding-protein-dependent transport systems inner membrane component  29.69 
 
 
263 aa  115  1.0000000000000001e-24  Marinomonas sp. MWYL1  Bacteria  normal  0.88688  normal 
 
 
-
 
NC_005945  BAS0693  ABC transporter permease  32.27 
 
 
250 aa  114  2.0000000000000002e-24  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0770  binding-protein-dependent transport systems inner membrane component  33.87 
 
 
273 aa  114  2.0000000000000002e-24  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_007530  GBAA_0727  ABC transporter permease  32.27 
 
 
250 aa  114  2.0000000000000002e-24  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0363276  n/a   
 
 
-
 
NC_011830  Dhaf_0877  binding-protein-dependent transport systems inner membrane component  29.21 
 
 
260 aa  114  3e-24  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00000000112184  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0643  binding-protein-dependent transport systems inner membrane component  31.85 
 
 
251 aa  113  3e-24  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0435  binding-protein-dependent transport systems inner membrane component  31.69 
 
 
250 aa  113  4.0000000000000004e-24  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0804  putative ABC transporter, permease protein  31.85 
 
 
250 aa  113  4.0000000000000004e-24  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.22036e-46 
 
 
-
 
NC_014210  Ndas_4504  binding-protein-dependent transport systems inner membrane component  33.6 
 
 
281 aa  112  5e-24  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_02100  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  32.74 
 
 
308 aa  112  6e-24  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_010483  TRQ2_0450  binding-protein-dependent transport systems inner membrane component  32.7 
 
 
222 aa  111  2.0000000000000002e-23  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_5406  ABC transporter membrane spanning protein  29.96 
 
 
251 aa  110  2.0000000000000002e-23  Agrobacterium vitis S4  Bacteria  normal  0.408693  n/a   
 
 
-
 
NC_009664  Krad_3112  binding-protein-dependent transport systems inner membrane component  34.29 
 
 
253 aa  110  3e-23  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0371548 
 
 
-
 
NC_009012  Cthe_2116  binding-protein-dependent transport systems inner membrane component  29.71 
 
 
253 aa  110  3e-23  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0278  binding-protein-dependent transport systems inner membrane component  27.84 
 
 
258 aa  109  4.0000000000000004e-23  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_2084  binding-protein-dependent transport systems inner membrane component  34.6 
 
 
260 aa  109  4.0000000000000004e-23  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.566245  n/a   
 
 
-
 
NC_012791  Vapar_0620  binding-protein-dependent transport systems inner membrane component  34.88 
 
 
258 aa  110  4.0000000000000004e-23  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_1464  binding-protein-dependent transport systems inner membrane component  31.9 
 
 
287 aa  109  5e-23  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_013515  Smon_0476  binding-protein-dependent transport systems inner membrane component  28.52 
 
 
249 aa  109  6e-23  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_009485  BBta_1169  putative ABC transporter permease protein  32.67 
 
 
279 aa  108  9.000000000000001e-23  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3099  binding-protein dependent transport system inner membrane protein  32.6 
 
 
261 aa  108  1e-22  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.578785 
 
 
-
 
NC_008726  Mvan_3142  binding-protein-dependent transport systems inner membrane component  30 
 
 
264 aa  108  1e-22  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.32312  normal  0.0411868 
 
 
-
 
NC_009921  Franean1_3891  binding-protein-dependent transport systems inner membrane component  32.29 
 
 
300 aa  107  2e-22  Frankia sp. EAN1pec  Bacteria  hitchhiker  0.000896674  normal  0.103005 
 
 
-
 
NC_013235  Namu_1668  binding-protein-dependent transport systems inner membrane component  28.63 
 
 
288 aa  107  3e-22  Nakamurella multipartita DSM 44233  Bacteria  normal  0.173855  normal  0.365472 
 
 
-
 
NC_008709  Ping_2376  ABC transporter substrate binding inner membrane protein  28.85 
 
 
265 aa  106  3e-22  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_1140  binding-protein-dependent transport systems inner membrane component  26.81 
 
 
255 aa  107  3e-22  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0403  binding-protein-dependent transport systems inner membrane component  32.69 
 
 
271 aa  106  4e-22  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010001  Cphy_1151  binding-protein-dependent transport systems inner membrane component  27.95 
 
 
254 aa  106  5e-22  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_3181  binding-protein-dependent transport systems inner membrane component  28.57 
 
 
277 aa  106  5e-22  Burkholderia phymatum STM815  Bacteria  normal  0.0283642  normal 
 
 
-
 
NC_013093  Amir_2627  binding-protein-dependent transport systems inner membrane component  31.89 
 
 
288 aa  105  6e-22  Actinosynnema mirum DSM 43827  Bacteria  normal  0.752734  n/a   
 
 
-
 
NC_013173  Dbac_0926  binding-protein-dependent transport systems inner membrane component  33.82 
 
 
249 aa  105  7e-22  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.04587  n/a   
 
 
-
 
NC_013203  Apar_0391  binding-protein-dependent transport systems inner membrane component  29.17 
 
 
257 aa  105  9e-22  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR0211  ABC transporter, permease protein  28.69 
 
 
258 aa  105  1e-21  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_3758  binding-protein-dependent transport systems inner membrane component  26.96 
 
 
256 aa  105  1e-21  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_2545  binding-protein-dependent transport system protein  30.24 
 
 
287 aa  104  1e-21  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.240068  normal  0.521676 
 
 
-
 
NC_011313  VSAL_II0488  putative binding protein-dependent transport system, membrane component  32.2 
 
 
272 aa  103  3e-21  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.970837  n/a   
 
 
-
 
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