More than 300 homologs were found in PanDaTox collection
for query gene Amir_6844 on replicon NC_013093
Organism: Actinosynnema mirum DSM 43827



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013093  Amir_6844  transcriptional regulator, Crp/Fnr family  100 
 
 
235 aa  472  1e-132  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0901192  n/a   
 
 
-
 
NC_013093  Amir_5851  transcriptional regulator, Crp/Fnr family  75.44 
 
 
242 aa  355  2.9999999999999997e-97  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0930905  n/a   
 
 
-
 
NC_013093  Amir_5850  transcriptional regulator, Crp/Fnr family  67.12 
 
 
223 aa  289  3e-77  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0120826  n/a   
 
 
-
 
NC_013131  Caci_7216  transcriptional regulator, Crp/Fnr family  42.73 
 
 
246 aa  159  5e-38  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.726682  normal 
 
 
-
 
NC_009953  Sare_0070  cyclic nucleotide-binding protein  40.45 
 
 
227 aa  154  1e-36  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.376283 
 
 
-
 
NC_009921  Franean1_5506  Crp/FNR family transcriptional regulator  39.74 
 
 
246 aa  144  9e-34  Frankia sp. EAN1pec  Bacteria  normal  0.324567  normal  0.438631 
 
 
-
 
NC_013947  Snas_1232  transcriptional regulator, Crp/Fnr family  35.29 
 
 
235 aa  142  4e-33  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_6885  putative transcriptional regulator, Crp/Fnr family  38.99 
 
 
240 aa  130  2.0000000000000002e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1608  putative transcriptional regulator, Crp/Fnr family  34.62 
 
 
248 aa  116  3e-25  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_4977  transcriptional regulator, Crp/Fnr family  36.5 
 
 
234 aa  108  5e-23  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.111601 
 
 
-
 
NC_009921  Franean1_1677  cyclic nucleotide-binding protein  30.45 
 
 
258 aa  108  7.000000000000001e-23  Frankia sp. EAN1pec  Bacteria  normal  0.506462  normal  0.511537 
 
 
-
 
NC_013739  Cwoe_0602  transcriptional regulator, Crp/Fnr family  32.86 
 
 
225 aa  100  2e-20  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.628877 
 
 
-
 
NC_013093  Amir_5511  transcriptional regulator, Crp/Fnr family  34.02 
 
 
227 aa  99.8  4e-20  Actinosynnema mirum DSM 43827  Bacteria  normal  0.360617  n/a   
 
 
-
 
NC_013510  Tcur_1167  transcriptional regulator, Crp/Fnr family  31.8 
 
 
231 aa  90.9  2e-17  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0781257  n/a   
 
 
-
 
NC_013595  Sros_8981  putative transcriptional regulator, Crp/Fnr family  37.7 
 
 
222 aa  89.7  3e-17  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_1118  transcriptional regulator, Crp/Fnr family  31.2 
 
 
240 aa  87.4  2e-16  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_1644  Crp/FNR family transcriptional regulator  30.37 
 
 
223 aa  87.4  2e-16  Salinispora arenicola CNS-205  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_5783  transcriptional regulator, Crp/Fnr family  33.98 
 
 
212 aa  84.7  0.000000000000001  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.00268451  n/a   
 
 
-
 
NC_009380  Strop_1659  cyclic nucleotide-binding  30.37 
 
 
223 aa  84.7  0.000000000000001  Salinispora tropica CNB-440  Bacteria  normal  0.834954  normal 
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  29.86 
 
 
224 aa  80.9  0.00000000000002  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_2257  transcriptional regulator, Crp/Fnr family  32.61 
 
 
234 aa  79.7  0.00000000000004  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00000784359  n/a   
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  25.25 
 
 
225 aa  75.5  0.0000000000007  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  29.73 
 
 
225 aa  75.5  0.0000000000007  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  29.73 
 
 
225 aa  75.5  0.0000000000007  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  32.93 
 
 
225 aa  75.1  0.0000000000008  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3066  Crp/FNR family transcriptional regulator  31.09 
 
 
232 aa  74.7  0.000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  27.27 
 
 
225 aa  75.1  0.000000000001  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  27.55 
 
 
228 aa  73.2  0.000000000003  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0144  cyclic nucleotide-binding domain-containing protein  29.68 
 
 
227 aa  73.2  0.000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  0.993696  normal 
 
 
-
 
NC_011884  Cyan7425_4893  cyclic nucleotide-binding protein  32.87 
 
 
237 aa  73.2  0.000000000003  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  29.33 
 
 
225 aa  72.4  0.000000000006  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU1992  Crp/FNR family transcriptional regulator  29.06 
 
 
226 aa  71.6  0.00000000001  Geobacter sulfurreducens PCA  Bacteria  normal  0.103472  n/a   
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  27.83 
 
 
228 aa  71.6  0.00000000001  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_3761  putative Crp/Fnr family transcriptional regulator  30.46 
 
 
227 aa  70.9  0.00000000002  'Nostoc azollae' 0708  Bacteria  normal  0.0509841  n/a   
 
 
-
 
NC_008312  Tery_1037  cyclic nucleotide-binding protein  32.88 
 
 
227 aa  70.5  0.00000000002  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.272663 
 
 
-
 
NC_009511  Swit_2706  Crp/FNR family transcriptional regulator  26.63 
 
 
228 aa  70.1  0.00000000003  Sphingomonas wittichii RW1  Bacteria  normal  0.154877  normal 
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  29.12 
 
 
225 aa  69.7  0.00000000003  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  28.24 
 
 
228 aa  69.7  0.00000000003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_009253  Dred_3227  CRP/FNR family transcriptional regulator  24.55 
 
 
232 aa  69.7  0.00000000004  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_2076  Crp/FNR family transcriptional regulator  29.03 
 
 
234 aa  69.7  0.00000000004  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.398696  n/a   
 
 
-
 
NC_007516  Syncc9605_2514  Crp/FNR family transcriptional regulator  32 
 
 
231 aa  69.3  0.00000000005  Synechococcus sp. CC9605  Bacteria  normal  normal  0.619242 
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  26.94 
 
 
226 aa  68.9  0.00000000006  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_008312  Tery_1557  Crp/FNR family transcriptional regulator  29.53 
 
 
234 aa  68.9  0.00000000006  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.986178 
 
 
-
 
NC_014248  Aazo_3421  Crp/Fnr family transcriptional regulator  30.21 
 
 
232 aa  68.6  0.00000000008  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_0632  putative transcriptional regulator, Crp/Fnr family  30.39 
 
 
236 aa  68.6  0.00000000009  Actinosynnema mirum DSM 43827  Bacteria  normal  0.649143  n/a   
 
 
-
 
NC_011662  Tmz1t_1763  transcriptional regulator, Crp/Fnr family  25.64 
 
 
223 aa  68.2  0.0000000001  Thauera sp. MZ1T  Bacteria  normal  0.796832  n/a   
 
 
-
 
NC_011729  PCC7424_4798  cyclic nucleotide-binding protein  28.16 
 
 
227 aa  68.2  0.0000000001  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009972  Haur_0049  Crp/FNR family transcriptional regulator  32.62 
 
 
252 aa  67  0.0000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.422683  n/a   
 
 
-
 
NC_007406  Nwi_3032  Crp family transcriptional regulator  27.78 
 
 
224 aa  67.4  0.0000000002  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0461942  normal 
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  29.31 
 
 
220 aa  67  0.0000000002  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  27.01 
 
 
226 aa  67.8  0.0000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  30.68 
 
 
231 aa  67  0.0000000002  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_013131  Caci_8335  putative transcriptional regulator, Crp/Fnr family  31.89 
 
 
209 aa  66.6  0.0000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.339186  normal 
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  24.75 
 
 
225 aa  66.2  0.0000000004  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  25.91 
 
 
226 aa  66.2  0.0000000004  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_013161  Cyan8802_0916  transcriptional regulator, Crp/Fnr family  27.48 
 
 
235 aa  64.3  0.000000001  Cyanothece sp. PCC 8802  Bacteria  normal  0.18169  normal 
 
 
-
 
NC_011726  PCC8801_0890  transcriptional regulator, Crp/Fnr family  27.48 
 
 
235 aa  64.3  0.000000001  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007777  Francci3_2741  cyclic nucleotide-binding domain-containing protein  29.47 
 
 
225 aa  64.3  0.000000001  Frankia sp. CcI3  Bacteria  normal  normal  0.705936 
 
 
-
 
NC_011729  PCC7424_2678  transcriptional regulator, Crp/Fnr family  29.28 
 
 
235 aa  64.7  0.000000001  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007760  Adeh_1256  cyclic nucleotide-binding domain-containing protein  28.82 
 
 
215 aa  64.3  0.000000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_0678  transcriptional regulator, Crp/Fnr family  22.96 
 
 
236 aa  64.3  0.000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236133  normal 
 
 
-
 
NC_008820  P9303_28321  putative regulatory protein  31.55 
 
 
231 aa  64.3  0.000000002  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal  0.270503 
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  26.82 
 
 
226 aa  63.5  0.000000003  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_008009  Acid345_3455  Crp/FNR family transcriptional regulator  28.12 
 
 
237 aa  63.5  0.000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.063385 
 
 
-
 
NC_011898  Ccel_1678  transcriptional regulator, Crp/Fnr family  21.5 
 
 
234 aa  63.5  0.000000003  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  27.87 
 
 
225 aa  63.2  0.000000003  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  25.32 
 
 
352 aa  63.2  0.000000004  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_011891  A2cp1_2700  cyclic nucleotide-binding protein  28.49 
 
 
215 aa  62.8  0.000000004  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  hitchhiker  0.00108848  n/a   
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  24.87 
 
 
242 aa  62.4  0.000000005  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_012918  GM21_2448  transcriptional regulator, Crp/Fnr family  25 
 
 
238 aa  62.4  0.000000006  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008254  Meso_2246  Crp/FNR family transcriptional regulator  23.35 
 
 
233 aa  62.4  0.000000006  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  23.76 
 
 
236 aa  62.4  0.000000006  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_009621  Smed_6276  CRP/FNR family transcriptional regulator  25.23 
 
 
231 aa  62  0.000000007  Sinorhizobium medicae WSM419  Bacteria  normal  0.298402  normal  0.17195 
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  25.35 
 
 
226 aa  62  0.000000007  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2607  cyclic nucleotide-binding protein  30 
 
 
215 aa  62  0.000000008  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1802  transcriptional regulator, Crp/Fnr family  25 
 
 
238 aa  62  0.000000008  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0262  Crp/FNR family transcriptional regulator  26.03 
 
 
231 aa  61.6  0.000000009  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0238  Crp/FNR family transcriptional regulator  26.03 
 
 
231 aa  61.6  0.000000009  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  27.49 
 
 
224 aa  61.6  0.000000009  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  27.23 
 
 
243 aa  61.6  0.00000001  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_013440  Hoch_5645  putative transcriptional regulator, Crp/Fnr family  30.95 
 
 
240 aa  60.8  0.00000002  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_3957  transcriptional regulator, Crp/Fnr family  29.51 
 
 
289 aa  60.5  0.00000002  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0757  Crp/FNR family transcriptional regulator  23.2 
 
 
236 aa  60.8  0.00000002  Clostridium perfringens SM101  Bacteria  normal  0.0100726  n/a   
 
 
-
 
NC_008496  LEUM_A06  Crp-like transcriptional regulator  24.88 
 
 
230 aa  60.5  0.00000002  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_2016  Crp/FNR family transcriptional regulator  25.34 
 
 
229 aa  60.1  0.00000003  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.0776172  n/a   
 
 
-
 
NC_007958  RPD_1522  cyclic nucleotide-binding  25.12 
 
 
241 aa  60.1  0.00000003  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.500349  normal  0.967279 
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  20.69 
 
 
236 aa  60.1  0.00000003  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_007406  Nwi_2417  cyclic nucleotide-binding protein  23.5 
 
 
250 aa  59.7  0.00000004  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.034588  normal  0.0382931 
 
 
-
 
NC_011884  Cyan7425_1533  transcriptional regulator, Crp/Fnr family  31.32 
 
 
231 aa  59.7  0.00000004  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  20.69 
 
 
236 aa  59.7  0.00000004  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_008390  Bamb_2589  Crp/FNR family transcriptional regulator  25 
 
 
235 aa  59.7  0.00000004  Burkholderia ambifaria AMMD  Bacteria  normal  0.0679634  n/a   
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  27.08 
 
 
251 aa  59.3  0.00000005  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_011004  Rpal_0837  transcriptional regulator, Crp/Fnr family  25.21 
 
 
234 aa  59.3  0.00000005  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_3189  transcriptional regulator  26.03 
 
 
236 aa  59.3  0.00000005  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_0719  transcriptional regulator, Crp/Fnr family  28.18 
 
 
257 aa  58.9  0.00000007  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000204419 
 
 
-
 
NC_009439  Pmen_4353  CRP/FNR family transcriptional regulator  27.19 
 
 
227 aa  58.9  0.00000007  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_1975  Crp/FNR family transcriptional regulator  22.46 
 
 
230 aa  58.5  0.00000008  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1853  transcriptional regulator, Crp/Fnr family  23.78 
 
 
240 aa  58.5  0.00000009  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_1012  Crp/FNR family transcriptional regulator  24.22 
 
 
241 aa  58.5  0.00000009  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.88102  normal  0.736744 
 
 
-
 
NC_009636  Smed_0098  CRP/FNR family transcriptional regulator  23.27 
 
 
234 aa  58.5  0.00000009  Sinorhizobium medicae WSM419  Bacteria  normal  0.2435  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>