10 homologs were found in PanDaTox collection
for query gene Amir_4411 on replicon NC_013093
Organism: Actinosynnema mirum DSM 43827



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013093  Amir_4411    100 
 
 
1113 bp  2206    Actinosynnema mirum DSM 43827  Bacteria  decreased coverage  0.000691245  n/a   
 
 
-
 
NC_013595  Sros_0228  hypothetical protein  90.28 
 
 
1173 bp  87.7  0.000000000000006  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_2752  integrase domain protein SAM domain protein  94.44 
 
 
1089 bp  56  0.00002  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00014768  normal  0.023237 
 
 
-
 
NC_008726  Mvan_0904  aldehyde dehydrogenase  100 
 
 
1446 bp  50.1  0.001  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_1314  hypothetical protein  85.96 
 
 
1248 bp  50.1  0.001  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0619252  normal  0.296506 
 
 
-
 
NC_008726  Mvan_1244  TetR family transcriptional regulator  100 
 
 
621 bp  48.1  0.005  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.218846 
 
 
-
 
NC_009921  Franean1_4940  putative secreted protein  96.43 
 
 
1392 bp  48.1  0.005  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4785  conserved hypothetical protein; putative signal peptide  96.43 
 
 
1356 bp  48.1  0.005  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.432202  n/a   
 
 
-
 
NC_012669  Bcav_1101  exodeoxyribonuclease VII, large subunit  100 
 
 
1299 bp  48.1  0.005  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_3722  protein of unknown function DUF214  100 
 
 
912 bp  48.1  0.005  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.233251  normal 
 
 
-
 
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