More than 300 homologs were found in PanDaTox collection
for query gene Acid345_4279 on replicon NC_008009
Organism: Candidatus Koribacter versatilis Ellin345



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008009  Acid345_4279  response regulator receiver protein  100 
 
 
232 aa  464  9.999999999999999e-131  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.254527  normal 
 
 
-
 
NC_011146  Gbem_0075  response regulator receiver modulated PilZ sensor protein  30.48 
 
 
227 aa  82.8  0.000000000000005  Geobacter bemidjiensis Bem  Bacteria  normal  0.124346  n/a   
 
 
-
 
NC_012918  GM21_0058  response regulator receiver modulated PilZ sensor protein  29.52 
 
 
226 aa  79.3  0.00000000000005  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00000000000000220235 
 
 
-
 
NC_002939  GSU3263  response regulator  27.19 
 
 
231 aa  77.4  0.0000000000002  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2710  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  35.56 
 
 
704 aa  76.6  0.0000000000003  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00325078 
 
 
-
 
NC_002939  GSU0877  response regulator  28.19 
 
 
248 aa  75.1  0.0000000000009  Geobacter sulfurreducens PCA  Bacteria  normal  0.200847  n/a   
 
 
-
 
NC_013522  Taci_0717  two component transcriptional regulator, winged helix family  30.17 
 
 
226 aa  74.7  0.000000000001  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  hitchhiker  0.000154116  n/a   
 
 
-
 
NC_011146  Gbem_1506  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  34.81 
 
 
704 aa  74.3  0.000000000001  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_0962  PAS/PAC sensor hybrid histidine kinase  38.18 
 
 
823 aa  73.6  0.000000000003  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_007955  Mbur_0878  response regulator receiver  36.84 
 
 
302 aa  72.8  0.000000000004  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_008228  Patl_3542  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  28.28 
 
 
590 aa  72.4  0.000000000006  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_2497  sporulation transcriptional activator Spo0A  30.89 
 
 
266 aa  71.6  0.000000000009  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3309  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  30 
 
 
900 aa  71.6  0.00000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.269875  normal  0.342346 
 
 
-
 
NC_007484  Noc_0847  two component diguanylate cyclase  36.59 
 
 
327 aa  71.2  0.00000000001  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_2180  response regulator receiver  33.04 
 
 
151 aa  70.9  0.00000000001  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.269305  n/a   
 
 
-
 
NC_007005  Psyr_1098  PAS:GGDEF  32.17 
 
 
705 aa  70.5  0.00000000002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_4759  integral membrane sensor hybrid histidine kinase  33.91 
 
 
593 aa  70.5  0.00000000002  Caulobacter sp. K31  Bacteria  normal  normal  0.0993289 
 
 
-
 
NC_009483  Gura_3986  response regulator receiver modulated PilZ sensor protein  25.88 
 
 
236 aa  70.5  0.00000000002  Geobacter uraniireducens Rf4  Bacteria  normal  0.694656  n/a   
 
 
-
 
NC_013422  Hneap_0133  response regulator receiver modulated diguanylate cyclase  34.51 
 
 
461 aa  70.1  0.00000000002  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_2343  response regulator receiver  29.03 
 
 
440 aa  70.5  0.00000000002  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_0677  response regulator receiver modulated metal dependent phosphohydrolase  35.14 
 
 
343 aa  70.9  0.00000000002  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.756866  n/a   
 
 
-
 
NC_013422  Hneap_2065  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  31.78 
 
 
615 aa  70.5  0.00000000002  Halothiobacillus neapolitanus c2  Bacteria  normal  0.722895  n/a   
 
 
-
 
NC_011145  AnaeK_0606  response regulator receiver modulated GAF sensor protein  35.14 
 
 
622 aa  70.1  0.00000000003  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_06763  transcriptional regulatory protein CpxR  25 
 
 
221 aa  70.1  0.00000000003  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007760  Adeh_0571  putative GAF sensor protein  35.14 
 
 
622 aa  70.1  0.00000000003  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_0598  response regulator receiver modulated GAF sensor protein  35.14 
 
 
622 aa  70.1  0.00000000003  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.592678  n/a   
 
 
-
 
NC_008554  Sfum_3268  two component, sigma54 specific, Fis family transcriptional regulator  40.37 
 
 
483 aa  70.1  0.00000000003  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.474695  normal 
 
 
-
 
NC_002977  MCA1440  response regulator  27.67 
 
 
391 aa  69.7  0.00000000004  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0677305  n/a   
 
 
-
 
NC_011059  Paes_1214  response regulator receiver protein  34.45 
 
 
125 aa  69.3  0.00000000004  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.678516  hitchhiker  0.000513941 
 
 
-
 
NC_008554  Sfum_2092  two component, sigma54 specific, Fis family transcriptional regulator  35.25 
 
 
462 aa  69.3  0.00000000004  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.131918 
 
 
-
 
NC_002978  WD0221  response regulator PleD  29.66 
 
 
460 aa  69.3  0.00000000005  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3819  PAS/PAC sensor hybrid histidine kinase  34.51 
 
 
1297 aa  69.3  0.00000000005  Anabaena variabilis ATCC 29413  Bacteria  normal  0.11644  normal 
 
 
-
 
NC_012034  Athe_1885  response regulator receiver protein  33.08 
 
 
1066 aa  69.3  0.00000000005  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.166704  n/a   
 
 
-
 
NC_008751  Dvul_2284  two component, sigma54 specific, Fis family transcriptional regulator  33.64 
 
 
488 aa  68.9  0.00000000006  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_007796  Mhun_1941  response regulator receiver domain-containing protein  33.04 
 
 
156 aa  68.6  0.00000000008  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_008528  OEOE_1773  DNA-binding response regulator  32.81 
 
 
224 aa  68.6  0.00000000009  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0059  response regulator receiver domain-containing protein  33.91 
 
 
125 aa  67.8  0.0000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  0.157498  normal  0.212271 
 
 
-
 
NC_007512  Plut_2011  PAS/PAC sensor hybrid histidine kinase  33.33 
 
 
814 aa  68.2  0.0000000001  Chlorobium luteolum DSM 273  Bacteria  normal  normal  0.866808 
 
 
-
 
NC_011831  Cagg_0863  response regulator receiver modulated metal dependent phosphohydrolase  30.3 
 
 
351 aa  67.8  0.0000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.297515  normal  0.141829 
 
 
-
 
NC_009943  Dole_1649  two component, sigma54 specific, Fis family transcriptional regulator  31.85 
 
 
479 aa  68.2  0.0000000001  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_1175  hybrid sensory histidine kinase BarA  30.17 
 
 
935 aa  67.8  0.0000000001  Shewanella sp. MR-7  Bacteria  normal  0.846523  normal  0.0419846 
 
 
-
 
NC_008577  Shewana3_1109  hybrid sensory histidine kinase BarA  30.17 
 
 
935 aa  67.8  0.0000000001  Shewanella sp. ANA-3  Bacteria  normal  normal  0.527009 
 
 
-
 
NC_011729  PCC7424_2752  multi-component transcriptional regulator, winged helix family  30.17 
 
 
799 aa  67  0.0000000002  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_004347  SO_3457  hybrid sensory histidine kinase BarA  29.31 
 
 
935 aa  67  0.0000000002  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_004578  PSPTO_1278  sensory box protein/response regulator  31.62 
 
 
705 aa  67  0.0000000002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.517683  n/a   
 
 
-
 
NC_009441  Fjoh_3400  two component transcriptional regulator  27.44 
 
 
224 aa  67  0.0000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.105495  n/a   
 
 
-
 
NC_014148  Plim_2544  DNA binding domain protein, excisionase family  32.46 
 
 
264 aa  67  0.0000000002  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.0361834  n/a   
 
 
-
 
NC_009253  Dred_1086  response regulator receiver protein  33.33 
 
 
256 aa  67.4  0.0000000002  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_1887  two component transcriptional regulator  31.36 
 
 
231 aa  67  0.0000000002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.882564  normal  0.344123 
 
 
-
 
NC_008726  Mvan_4844  two component transcriptional regulator  31.36 
 
 
231 aa  67  0.0000000002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.312171 
 
 
-
 
NC_007604  Synpcc7942_1221  response regulator receiver domain-containing protein  33.96 
 
 
125 aa  67.4  0.0000000002  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0143  response regulator receiver protein  32.85 
 
 
206 aa  67.4  0.0000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_5611  two component transcriptional regulator, winged helix family  29.57 
 
 
235 aa  67  0.0000000002  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.736991 
 
 
-
 
NC_011884  Cyan7425_1795  PAS/PAC sensor hybrid histidine kinase  29.31 
 
 
1330 aa  67  0.0000000002  Cyanothece sp. PCC 7425  Bacteria  normal  0.173382  normal 
 
 
-
 
NC_008576  Mmc1_3580  response regulator receiver protein  31.11 
 
 
564 aa  67  0.0000000002  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_2695  response regulator receiver domain-containing protein  34.17 
 
 
186 aa  66.6  0.0000000003  Jannaschia sp. CCS1  Bacteria  decreased coverage  0.00269866  normal  0.78823 
 
 
-
 
NC_010506  Swoo_3355  hybrid sensory histidine kinase BarA  29.66 
 
 
937 aa  67  0.0000000003  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0869798  hitchhiker  0.00259338 
 
 
-
 
NC_011146  Gbem_1662  response regulator receiver sensor signal transduction histidine kinase  26.77 
 
 
396 aa  66.2  0.0000000004  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1805  response regulator receiver modulated diguanylate cyclase  26.03 
 
 
310 aa  66.2  0.0000000004  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0638722  n/a   
 
 
-
 
NC_010001  Cphy_1861  two component transcriptional regulator  28.91 
 
 
225 aa  66.2  0.0000000004  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0000248634  n/a   
 
 
-
 
NC_010730  SYO3AOP1_1480  two component transcriptional regulator, winged helix family  29.77 
 
 
219 aa  66.2  0.0000000004  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.000000000681553  n/a   
 
 
-
 
NC_011831  Cagg_2467  response regulator receiver modulated serine phosphatase  28.7 
 
 
385 aa  66.2  0.0000000004  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_013512  Sdel_0736  response regulator receiver  30.7 
 
 
236 aa  66.2  0.0000000004  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1955  two component transcriptional regulator, winged helix family  26.4 
 
 
236 aa  65.9  0.0000000005  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.295041  normal 
 
 
-
 
NC_012793  GWCH70_0170  two component transcriptional regulator, winged helix family  27.13 
 
 
232 aa  65.9  0.0000000005  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_0178  response regulator receiver modulated diguanylate cyclase  28.77 
 
 
322 aa  65.9  0.0000000006  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.895619 
 
 
-
 
NC_010424  Daud_1419  two component transcriptional regulator  29.55 
 
 
231 aa  65.9  0.0000000006  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0720218  n/a   
 
 
-
 
NC_009092  Shew_1200  hybrid sensory histidine kinase BarA  30.91 
 
 
933 aa  65.9  0.0000000006  Shewanella loihica PV-4  Bacteria  normal  0.930165  normal 
 
 
-
 
NC_009715  CCV52592_0808  alkaline phosphatase synthesis transcriptional regulatory protein PhoP  31.9 
 
 
226 aa  65.9  0.0000000006  Campylobacter curvus 525.92  Bacteria  decreased coverage  0.0000531821  n/a   
 
 
-
 
NC_009767  Rcas_3604  putative PAS/PAC sensor protein  32.59 
 
 
619 aa  65.9  0.0000000006  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.562878 
 
 
-
 
NC_011145  AnaeK_3557  response regulator receiver modulated diguanylate cyclase  30.56 
 
 
322 aa  65.5  0.0000000007  Anaeromyxobacter sp. K  Bacteria  normal  0.457648  n/a   
 
 
-
 
NC_013161  Cyan8802_1169  response regulator receiver modulated diguanylate cyclase  30.95 
 
 
308 aa  65.5  0.0000000007  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_4229  response regulator receiver sensor signal transduction histidine kinase  34.51 
 
 
383 aa  65.5  0.0000000007  'Nostoc azollae' 0708  Bacteria  normal  0.599633  n/a   
 
 
-
 
NC_008262  CPR_0609  DNA-binding response regulator  28.21 
 
 
231 aa  65.5  0.0000000007  Clostridium perfringens SM101  Bacteria  hitchhiker  0.0000282114  n/a   
 
 
-
 
NC_008321  Shewmr4_1109  hybrid sensory histidine kinase BarA  29.31 
 
 
935 aa  65.5  0.0000000007  Shewanella sp. MR-4  Bacteria  normal  normal  0.715392 
 
 
-
 
NC_011726  PCC8801_1139  response regulator receiver modulated diguanylate cyclase  30.95 
 
 
308 aa  65.5  0.0000000007  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009455  DehaBAV1_1106  response regulator receiver protein  31.62 
 
 
180 aa  65.1  0.0000000008  Dehalococcoides sp. BAV1  Bacteria  normal  0.0674112  n/a   
 
 
-
 
NC_013889  TK90_0533  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  35.04 
 
 
597 aa  65.5  0.0000000008  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.985347  normal 
 
 
-
 
NC_007760  Adeh_3473  response regulator receiver modulated diguanylate cyclase  30.56 
 
 
351 aa  65.5  0.0000000008  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_000851  probable transcriptional regulator SyrB  29.13 
 
 
221 aa  65.1  0.0000000008  Vibrio sp. Ex25  Bacteria  decreased coverage  0.00675785  n/a   
 
 
-
 
NC_002939  GSU1671  response regulator/GGDEF domain-containing protein  31.9 
 
 
322 aa  65.1  0.0000000009  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_1949  putative PAS/PAC sensor protein  37.5 
 
 
461 aa  65.1  0.0000000009  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.724461 
 
 
-
 
NC_014212  Mesil_1847  CheA signal transduction histidine kinase  27.73 
 
 
934 aa  65.1  0.0000000009  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.379526 
 
 
-
 
NC_011662  Tmz1t_1466  response regulator receiver protein  33.93 
 
 
131 aa  65.1  0.0000000009  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0623  DNA-binding response regulator  27.56 
 
 
231 aa  65.1  0.0000000009  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000212568  n/a   
 
 
-
 
NC_009338  Mflv_0461  two component transcriptional regulator  33.33 
 
 
248 aa  64.3  0.000000001  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.735267  normal  0.697364 
 
 
-
 
NC_003910  CPS_1619  DNA-binding response regulator  34.51 
 
 
185 aa  64.7  0.000000001  Colwellia psychrerythraea 34H  Bacteria  normal  0.208637  n/a   
 
 
-
 
NC_008700  Sama_1031  hybrid sensory histidine kinase BarA  31.82 
 
 
941 aa  64.3  0.000000001  Shewanella amazonensis SB2B  Bacteria  normal  0.581247  normal 
 
 
-
 
NC_013440  Hoch_2174  PAS/PAC sensor hybrid histidine kinase  33.04 
 
 
633 aa  64.3  0.000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  0.634157  normal  0.649523 
 
 
-
 
NC_010511  M446_2803  adenylate/guanylate cyclase  35.34 
 
 
531 aa  64.7  0.000000001  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_0085  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  34.45 
 
 
738 aa  64.3  0.000000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.127866 
 
 
-
 
NC_011662  Tmz1t_2833  response regulator receiver modulated metal dependent phosphohydrolase  34.11 
 
 
360 aa  64.3  0.000000001  Thauera sp. MZ1T  Bacteria  normal  0.809465  n/a   
 
 
-
 
NC_007413  Ava_2563  periplasmic sensor hybrid histidine kinase  30.77 
 
 
935 aa  64.7  0.000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.851477 
 
 
-
 
NC_009943  Dole_2811  multi-sensor signal transduction histidine kinase  36.36 
 
 
498 aa  65.1  0.000000001  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.782124  n/a   
 
 
-
 
NC_007484  Noc_1271  hybrid signal transduction histidine kinase and diguanylate cyclase/phosphodiesterase  32.74 
 
 
1499 aa  64.7  0.000000001  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.422796  n/a   
 
 
-
 
NC_008700  Sama_0748  response regulator receiver protein  31.3 
 
 
312 aa  64.7  0.000000001  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_10999  two component response transcriptional regulatory protein MprA  31.36 
 
 
230 aa  64.7  0.000000001  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.00000000188235  normal  0.671639 
 
 
-
 
NC_011830  Dhaf_4841  response regulator receiver protein  32.41 
 
 
118 aa  64.7  0.000000001  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.202718  n/a   
 
 
-
 
NC_009455  DehaBAV1_0937  two component transcriptional regulator  32.48 
 
 
227 aa  64.7  0.000000001  Dehalococcoides sp. BAV1  Bacteria  normal  0.834094  n/a   
 
 
-
 
NC_008228  Patl_2301  two component transcriptional regulator  34.48 
 
 
244 aa  64.7  0.000000001  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.00025805  n/a   
 
 
-
 
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