12 homologs were found in PanDaTox collection
for query gene Aave_0006 on replicon NC_008752
Organism: Acidovorax citrulli AAC00-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008752  Aave_0006    100 
 
 
684 bp  1356    Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_0675  regulator of RNA terminal phosphate cyclase  82.13 
 
 
1608 bp  180  3e-43  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc0222  sigma-54 interacting transcription regulator protein  88.24 
 
 
1608 bp  89.7  0.000000000000001  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_4423  Sigma 54 interacting domain protein  85.44 
 
 
1614 bp  85.7  0.00000000000002  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_60600  transcriptional regulator RtcR  86.21 
 
 
1596 bp  77.8  0.000000000004  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5221  transcriptional regulator RtcR  86.21 
 
 
1599 bp  77.8  0.000000000004  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_0497  regulator of RNA terminal phosphate cyclase  86.08 
 
 
1596 bp  69.9  0.0000000009  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1196  regulator of RNA terminal phosphate cyclase  85.06 
 
 
1602 bp  69.9  0.0000000009  Pseudomonas mendocina ymp  Bacteria  normal  0.330253  normal 
 
 
-
 
NC_007948  Bpro_1470  regulator of RNA terminal phosphate cyclase  85.53 
 
 
1596 bp  63.9  0.00000006  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C3830    90.2 
 
 
1584 bp  61.9  0.0000002  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.812201 
 
 
-
 
NC_011149  SeAg_B3723  transcriptional regulatory protein RtcR  90.2 
 
 
1584 bp  61.9  0.0000002  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A3892  transcriptional regulator RtcR  88.24 
 
 
1584 bp  54  0.00005  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.246369  normal 
 
 
-
 
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