| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CA2559_10733 |
|---|
| Symbol | |
|---|
| ID | 9297635 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Croceibacter atlanticus HTCC2559 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014230 |
|---|
| Strand | - |
|---|
| Start bp | 2340080 |
|---|
| End bp | 2342041 |
|---|
| Gene Length | 1962 bp |
|---|
| Protein Length | 653 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | |
|---|
| Product | capsular polysaccharide biosynthesis protein CapD |
|---|
| Protein accession | YP_003716890 |
|---|
| Protein GI | 298208711 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTATA GTGAAAATAA GATTAATGTT CGTAATATTA AATATCTTCC AAGATGGGTT
GTATTAATAA TTGATACATT ACTTATTTGT ATTTCTTTAA TTGTATCAAT AATAATACTT
AATAGAATTA GAATAAGTCC TTTGGATGTT TTAGAATATT CCATTCAAGC ATCTATTGTA
ATTTCTGTTA ATGTAATCTT CTTCTTTTTA TATAAAACAT ACTCAGGACT TATAAGACAC
TCTTCAATGA TGGATGCATT AAAGCTGTTT TTAGCTTCAA TGAGTACCAC AGTTGTATGC
CTTATGTTAA ATGTATTTTA TCAAGGCACT TATGGTGATA AGATTTTTAT TACTACCGGT
CTTATAATGT ATTCATTTAT ATCATTTTCG ATTTTATTTT TATTTAGGAT AGCAATTAAA
CAACTCTATG AGTTTTTTAA GATAGCACAA CGTGAAGAAG ACCTAATTGA TGTAGCAATT
CTCGGAATAG ATGAAAATGC AATATCTATT GCTGCAGCAT TAGAAATGGA GCACCCTAAA
CGTTTTCTAG TAAAGGGATT TGTGTCTAGA AATAACTTTA AAAGACAGTT AAGAATATTA
GAAAAGCCTG TTGTTAGAGT AAAGGAGTCT ATTTTACCAT CATTAAGAAT ATTAAATGTA
AAGGCTATAA TAATTACTTC TGCTATAGAC CCAAAAGAAA AGCAGCAAAT AGTAGATGAG
TGTTTAGAGA ATGACATTAA GATGTATAGT TCTCCAATCT TATCAAATTT TGAGGAAGGT
AATTCTCCAC AAATACAAAA GCTGCAAATT GAGGATTTAT TAGAAAGAGA GCCTATTGTA
TTAAATAAAA AAAATAAAGA ACATCAATTA AAAAATAGAA CTGTCTTAGT AACTGGTGGA
GCAGGATCTA TAGGTAGTGA AATTGTTAGG CAAGTAGCAG AATACAAACC TAAGATGTTA
TTAGTATTAG ATCAAGCAGA ATCTCCTTTG CATCAAATAC AACTGGAGAT AAATGAGCAC
TTTCCTAACC TTAAGTACAA ATGTATAATT TGTGATGTTA CTAACAACGT TCGCTTGCAA
AGTGTTTTTG ATGAGTTTGA TATTGATGTT ATTTATCACG CAGCGGCATA TAAACATGTG
CCACTTATGG AGAACAACCC TCATGAAGCT ATTTTAACAA ACATTCTTGG AACAAAACAA
GTTGCAGATT TAGCTGCAAA GTTTAAAGTA GGTCACTTTG TAATGGTATC TACAGATAAA
GCAGTAAACC CTAGTAATGT TATGGGAGCT TCTAAAAGAG CTTCAGAAAT GTATGTGCAA
TCTCTAAATT ATAACTTACA ACTGAAAGAT AGATGTGCTA CAAAATTTAT AACTACAAGA
TTTGGTAATG TTTTAGGATC TAATGGATCT GTTGTCCCTT TATTTAAAAA ACAAATTGAA
GAAGGCGGAC CAGTTACCAT CACACATCCA GATATAATTA GATATTTTAT GACAATCCCA
GAAGCCTGTC AATTAGTTTT GGAAGCTGGT GCTATGGGTA AAGGTGGTGA GATATTTATT
TTTGATATGG GTAAACCTGT CAAGATTATG GATTTAGCCA AGAAAATGAT AAAGTTGGCT
GGATTTATAC CAAACAAGGA TATACATATT AAAATAACTG GATTAAGGCC AGGAGAAAAG
TTATACGAAG AACTGCTATC AGATGAAGCT AAAACTCTAC CTACACATCA TGAAAAAATT
ATGATTACTA AAGATAGAAA TGATAACTAT GAGTTTATCT CAAGCAGTAT AGATAGCGTT
ATTAATTCTG CAAATAATCA TAATAATGTG CGTGTGGTTC ACAAGCTTAA AAAAATGATT
CCAGAATTTA AAAGTAAGAA TTCATCTTAT GAGTCATTAG ATGCAGAGGT GTCGTTTAAC
GAGATAATAA ATGAGGATAC CGTTAAAATA AAAAAGCTTT AA
|
|---|
| Protein sequence | MSYSENKINV RNIKYLPRWV VLIIDTLLIC ISLIVSIIIL NRIRISPLDV LEYSIQASIV
ISVNVIFFFL YKTYSGLIRH SSMMDALKLF LASMSTTVVC LMLNVFYQGT YGDKIFITTG
LIMYSFISFS ILFLFRIAIK QLYEFFKIAQ REEDLIDVAI LGIDENAISI AAALEMEHPK
RFLVKGFVSR NNFKRQLRIL EKPVVRVKES ILPSLRILNV KAIIITSAID PKEKQQIVDE
CLENDIKMYS SPILSNFEEG NSPQIQKLQI EDLLEREPIV LNKKNKEHQL KNRTVLVTGG
AGSIGSEIVR QVAEYKPKML LVLDQAESPL HQIQLEINEH FPNLKYKCII CDVTNNVRLQ
SVFDEFDIDV IYHAAAYKHV PLMENNPHEA ILTNILGTKQ VADLAAKFKV GHFVMVSTDK
AVNPSNVMGA SKRASEMYVQ SLNYNLQLKD RCATKFITTR FGNVLGSNGS VVPLFKKQIE
EGGPVTITHP DIIRYFMTIP EACQLVLEAG AMGKGGEIFI FDMGKPVKIM DLAKKMIKLA
GFIPNKDIHI KITGLRPGEK LYEELLSDEA KTLPTHHEKI MITKDRNDNY EFISSSIDSV
INSANNHNNV RVVHKLKKMI PEFKSKNSSY ESLDAEVSFN EIINEDTVKI KKL
|
|---|
| |