Gene CA2559_02560 details

Gene Information

• Locus tag: CA2559_02560
• ID: 9295997
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Croceibacter atlanticus HTCC2559
• Kingdom: Bacteria
• Replicon accession: NC_014230
• Strand: -
• Start bp: 601404
• End bp: 604784
• Gene Length: 3381 bp
• Protein Length: 1126 aa
• Translation table: 11
• GC content: 34%
• Product: transcription-repair coupling factor
• Protein accession: YP_003715278
• Protein GI: 298207099

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTAAGA CATCTATTTC CCAAGCCTTT TCTCGGTCTC CTCAATTCAG GAAACTGCAG 
GACACTATTG CCCAATCTCA AGAAAATTAT CATAAAACAA CCCTTACAGG ACTTGTTGGA 
TCTGCCGTAT CTTTTGCTAT TGCAGAAGCT TTTAAGCAAG CAGACAAACC ATTCTTGGCC 
ATATTTAACG ATAAGGAAGA AGCAGCTTAT TATTTAAATG ATTTTGAGCA ACTTATAAAA 
GATGATGAGG TGCTGTTTTA TCCCGGAAGC TACAGAAGAC CTTACCAAAT AGAAGAAACA 
GATAATGCCA ATGTACTACT TAGGGCTGAG GTTTTAAACA GACTTAATTC CAGAAGAAAA 
CCAGCCTTAA TCGTTACCTA TCCAGATGCA CTTTTTGAAA AGGTGGTAAC CAAAAAGGAG 
TTGGAGAAAA ACACGCTAAA ACTTAGTGTT GGAGAACAGG TTTCTATTGA TTTTGTGAAT 
GAAGTATTGT TTGAGTACAA GTTTCATCGT GTAGATTTTG TTACTGAACC AGGCGAATTT 
TCTTTACGTG GTGGTATTTT AGATGTATTT AGCTTTAGTC ACGATGAGCC TTTTAGAATT 
GAATTTTTTG GGGATGAAGT AGATAGCATA AGAACTTTTG ATGTAGAGAC ACAGTTGTCT 
TTAGAGCAAA CCAAAAAAAT TTCGATAATA CCTAATGTCG AAAATAAGTT GCTTCAAGAA 
TCTAGAGAAA GCTTCTTGAA ATATATTCAT CATAAAACTA TCATCTTCAG TAAAAATACA 
GAGCTTGTAT TTGGAAGAAT AGATTCAAAC TTTGATAAGG CTGTACAAGC TTTTAAAACA 
TTAAATGCAG AAACTAAACA CAGTGAACCA GAAGAGTTAT TTGCTACAGG AGCACTGTTA 
AAAGAGCAAC TTAAAGGATT TACGCATTTT GAAATTTTAA ATAAAAGTAC TGGTGCGGCA 
GACACCATAC AATTTCATAC AAGACCACAA CCAAGCTTTA ATAAGCAATT TAATTTGCTT 
ATTGAAAATT TAAATGAAAA CCATGAAGAT GGTTATCACA ACTATATAGC TTGCGTAAGT 
GAACAGCAAG CCAAGCGTTT TCATGATATT TTTGATGATG CAGAGCTTAA CGTAAAGCAA 
TATGAAACAG TAACAGTTTC TTTATACCAA GGTTTTATAG ATGATGAAAG TAATAGCGTT 
TGCTATACAG ATCATCAAAT TTTTGAGCGT TATCATAAAT TTAATTTAAA GAATGGCTAT 
GCTAAAAAAC AAGCCATTAC TTTAAAAGAG CTAACCAACC TTACTGTGGG AGATTATGTT 
ACACATATAG ATCACGGTAT TGGAAAATTT GGTGGTCTAC AGAAAATTGA TGTTGAGGGT 
AAGAAGCAAG AAGCTATTAA GTTAATTTAT GGAGATAGAG ATATTCTTTA CCTAAGCATA 
CATTCACTAC ACAAAATAAC CAAGTATAAT GGCAAAGATG GGCAAGCACC TAAAGTTTAT 
AAATTAGGTA GCCAAGCTTG GAAAAAACTG AAACAAAAAA CCAAGTCTAA GGTTAAGGAA 
ATAGCTTTTA ACCTTATAAA ATTATATGCA AAACGACGCC TAGAAAAAGG GTTTGCATTT 
GGTCCAGATA CCACAATGCA ACTTGAGTTA GAATCTTCTT TTATATATGA AGACACACCG 
GATCAAAGTA GTGCTACAGA AGATGTAAAA AAAGATATGG AAAACGAGCG GCCAATGGAT 
CGCTTAGTTT GTGGTGATGT AGGTTTTGGT AAAACCGAAA TTGCCATAAG AGCAGCATTT 
AAGGCTGTAG ATAATGGTAA GCAAGTAGCA GTTTTAGTAC CAACTACAAT CTTGGCGTTT 
CAGCATCATA AAACATTTAG TGAACGTTTA AAAGATTTTC CTGTCACGGT GGAATATTTA 
AATAGGTTTA GAAGCGCTAA AGAACGACGA GAAACCATAG CAGATTTAGA GGCAGGTAAG 
GTAGATATCA TTATAGGAAC TCACCAATTA GTAAATAAGA CTGTAAAGTT TAAAGATTTA 
GGGCTGTTAA TTGTAGATGA AGAACAAAAA TTTGGTGTGG CTGTAAAAGA CAAGCTAAAA 
ACCATAAAAG AAAATGTAGA CACACTTACC TTAACAGCAA CACCAATACC TAGAACGCTT 
CAGTTTAGTT TAATGGCTGC AAGAGATTTA AGTACCATTA CAACGCCACC ACCAAACAGA 
TATCCTGTTG AGACTAATGT AATTAGATTT TCAGAAGAAA GTATTCGTGA TGCTGTGCAA 
TATGAAATAC AACGAGGCGG TCAAGTTTAT TTTGTACACA ACCGTATAGA AAACATTAAG 
GAAGTTGCTG GTATGATACA ACGTGTAGTG CCAGATGCAA AAATTGGAAT TGGTCACGGC 
CAAATGGAAG GAAAAAAACT GGAGCAACTT ATGCTAAGTT TTATGAATGG AGATTTTGAT 
GTTCTAGTGT CTACTACAAT TATTGAAAGT GGTTTAGATG TACCAAATGC CAATACCATA 
TTTATAAACA ATGCCAATAA CTTTGGTCTT TCAGATCTTC ACCAAATGCG TGGCCGTGTT 
GGTCGTAGTA ATAAAAAGGC ATTCTGTTAT TTTATTACAC CACCATATTC TGCAATGACA 
GATGATGCCA GAAAACGTAT TACAGCGTTG GAGCAATTCT CAGATTTAGG AAGCGGTTTT 
AATATAGCCA TGAAAGATTT AGAAATTCGT GGAGCAGGAG ATTTACTTGG AGGTGAGCAA 
AGCGGATTTA TAAATGAAAT TGGTTTCGAT ACCTATCAGA AAATTTTAAA TGAAGCTATT 
GAAGAGCTTA AGGAAACAGA ATTTAAAGAT CTTTACGACA CTAAAGAAGA AGATAGAGTT 
TTCTTAAAAG ACACCACTAT AGATACAGAT ATTAGCCTTT TATTTCCAGA TGATTATATA 
AATAATATTT CTGAACGCTT AAACCTTTAT ACAGAGCTAA ACTCTATTTC TGAAGAGAAG 
GAACTTGAGG CATACGAAAA ACGCCTGTTA GATCGTTTTG GAGAGTTGCC ACAACAAGCA 
GAAGATTTAT TAAACTCTGT AAGGGTAAAA TGGATAGCTA CGCAAGTGGG TATTGAAAAG 
CTAATACTTA AGCAAGGTAA AATGATTGGC TACTTTATAA ACGATCAACA AAGTCCTTTT 
TACCAAAGTA ATACCTTTAC TAAGGTTTTA CAATATGTGC AAACACATCC TCGTCAAGTA 
GTTATGAAAG AAAAGAAAAC AAGAAACGGC TTAAGGCTTT TAGTTACTTT TGATAAAGTA 
AAGACAATTG ATAAGGCTTT AGAAGTTTTA AAACCTTTAG ATTTTAAGTC TCAAAAAGCA 
CAACAAGAAC AAGTGTCTTA A 

 

Protein sequence

MSKTSISQAF SRSPQFRKLQ DTIAQSQENY HKTTLTGLVG SAVSFAIAEA FKQADKPFLA 
IFNDKEEAAY YLNDFEQLIK DDEVLFYPGS YRRPYQIEET DNANVLLRAE VLNRLNSRRK 
PALIVTYPDA LFEKVVTKKE LEKNTLKLSV GEQVSIDFVN EVLFEYKFHR VDFVTEPGEF 
SLRGGILDVF SFSHDEPFRI EFFGDEVDSI RTFDVETQLS LEQTKKISII PNVENKLLQE 
SRESFLKYIH HKTIIFSKNT ELVFGRIDSN FDKAVQAFKT LNAETKHSEP EELFATGALL 
KEQLKGFTHF EILNKSTGAA DTIQFHTRPQ PSFNKQFNLL IENLNENHED GYHNYIACVS 
EQQAKRFHDI FDDAELNVKQ YETVTVSLYQ GFIDDESNSV CYTDHQIFER YHKFNLKNGY 
AKKQAITLKE LTNLTVGDYV THIDHGIGKF GGLQKIDVEG KKQEAIKLIY GDRDILYLSI 
HSLHKITKYN GKDGQAPKVY KLGSQAWKKL KQKTKSKVKE IAFNLIKLYA KRRLEKGFAF 
GPDTTMQLEL ESSFIYEDTP DQSSATEDVK KDMENERPMD RLVCGDVGFG KTEIAIRAAF 
KAVDNGKQVA VLVPTTILAF QHHKTFSERL KDFPVTVEYL NRFRSAKERR ETIADLEAGK 
VDIIIGTHQL VNKTVKFKDL GLLIVDEEQK FGVAVKDKLK TIKENVDTLT LTATPIPRTL 
QFSLMAARDL STITTPPPNR YPVETNVIRF SEESIRDAVQ YEIQRGGQVY FVHNRIENIK 
EVAGMIQRVV PDAKIGIGHG QMEGKKLEQL MLSFMNGDFD VLVSTTIIES GLDVPNANTI 
FINNANNFGL SDLHQMRGRV GRSNKKAFCY FITPPYSAMT DDARKRITAL EQFSDLGSGF 
NIAMKDLEIR GAGDLLGGEQ SGFINEIGFD TYQKILNEAI EELKETEFKD LYDTKEEDRV 
FLKDTTIDTD ISLLFPDDYI NNISERLNLY TELNSISEEK ELEAYEKRLL DRFGELPQQA 
EDLLNSVRVK WIATQVGIEK LILKQGKMIG YFINDQQSPF YQSNTFTKVL QYVQTHPRQV 
VMKEKKTRNG LRLLVTFDKV KTIDKALEVL KPLDFKSQKA QQEQVS