Gene Ndas_5116 details

Gene Information

• Locus tag: Ndas_5116
• ID: 9249009
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111
• Kingdom: Bacteria
• Replicon accession: NC_014211
• Strand: +
• Start bp: 261850
• End bp: 265317
• Gene Length: 3468 bp
• Protein Length: 1155 aa
• Translation table: 11
• GC content: 67%
• Product: DNA-directed RNA polymerase, beta subunit
• Protein accession: YP_003683003
• Protein GI: 297564030

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 14
• Fosmid unclonability p-value: 0.303948
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

TTGGCAGCCT CGCGCAACGC CTCCGCTAAC GCCCTTGGTC CGCACCGCGT TTCCTTCGCC 
CGTATCCAGG AACCACTGGA GGTCCCGAAC CTCCTCGCCC TTCAGACCGA GTCGTTCGAC 
TGGCTGCTGG GCAACGACAG GTGGAAGACC CGGGTTGAGA CGGCCCGAAA CGCTGGCCGC 
AAGGACGTTC CGGAGCAGTC CGGTCTCGAA GAGATCTTCG AGGAGATCAG CCCGATCGAG 
GACTTCTCGG GCACGATGTC CCTGTCGTTC CGCGACCACC GGTTCGAGCC GCCCAAGTAC 
TCAGAGGATG AGTGCAAGGA CAGGGACATG ACCTACTCCG CCCCGATGTT CGTCACGGCG 
GAGTTCATCA ACAACGACAC CGGTGAGATC AAGAGCCAGA CGGTGTTCAT GGGCGACTTC 
CCGCTCATGA CCGAGACCGG CACCTTCATC ATCAACGGCA CCGAGCGCGT CGTCGTGTCC 
CAGCTGGTGC GCTCCCCGGG CGTGTACTTC GACAAGTCCG TCGACAAGAC CTCGGACAAG 
GACCTCTACG GCTGCAAGGT CATCCCGTCC CGCGGCGCCT GGCTGGAGTT CGAGGTCGAC 
AAGCGCGACT TCGTCGGCGT CCGCATCGAC CGCAAGCGCA AGCAGGGCGT CACCGTCCTG 
CTCAAGGCGC TGGGCTGGAC CACCGACCAG ATCCTGGAGC GCTTCGGCCA GTACGAGTCC 
ATCCGCAACA CGCTGGAGAA GGACCCCACC GCGGGCACCG ACGACGCGCT GCTGGACATC 
TACCGCAAGC TGCGCCCCGG CGAGCCGCCC ACGAAGGAGT CGGCCCAGGC GCTGCTGGAG 
AACCTGTACT TCAACCCCAA GCGCTACGAC CTGGCCAAGG TCGGCCGTTA CAAGATCAAC 
AAGAAGCTCG GCCTGGACAC CGACTACCGG CAGGGCACCC TCACCGAAGA GGACATCGTC 
GCCACGATCG ACTACCTCGT CCGCCTGCAC GCGGGTGAGA CCGAGAAGGA GACCGTCAAC 
GGTCCCCGGC CGATCGAGAC CGACGACATC GACCACTTCG GCAACCGCCG CCTGCGCACC 
GTCGGCGAGC TCATCCAGAA CCAGGTCCGC CTGGGCCTGG CCCGCATGGA GCGCGTCGTC 
CGCGAGCGGA TGACCACCCA GGACGTCGAG GCGATCACGC CGCAGACCCT GATCAACATC 
CGTCCGGTCG TGGCCTCCAT CAAGGAGTTC TTCGGCACCT CGCAGCTGTC GCAGTTCATG 
GGCCAGACCA ACCCGCTGGA GGGCCTGACG CACAAGCGCC GCCTCTCCGC GCTGGGCCCG 
GGCGGCCTGT CCCGCGAGCG CGCGGGCTTC GAGGTCCGCG ACGTGCACCC CTCGCACTAC 
GGCCGCATGT GCCCGATCGA GACGCCCGAG GGACCGAACA TCGGTCTGAT CGGCTCGCTC 
GCCGCCTACG GCCGGGTCAA CTCCTTCGGC TTCGTGGAGA CCCCGTACCG CCGCATCATC 
GACGGCAAGG TCTCCGACCA GGTCGACTAC CTGACCGCGG ACGAGGAGGA CCTCCACGTC 
ATCGCGCAGG CCAACACGCC GATGAACCCC GACGGCTCCT TCGCCGAGGC CGGTGTGCTC 
GTGCGCCGCA AGGGCGGTGA GTTCGAGCAG GTCAGCACGG ACGAGGTCGA CTACATGGAC 
GTGTCGCCGC GCCAGATGGT GTCGGTCGCC ACCGCCATGA TCCCGTTCCT GGAGCACGAC 
GACGCCAACC GCGCCCTCAT GGGCTCGAAC ATGCAGCGCC AGGCCGTGCC GCTGCTCATG 
GCCGAGTCGC CGTTCGTCGG CACCGGCATG GAGTACCGCG CCGCCACCGA CGCCGGTGAG 
GTCGTCCTGG CGCAGAAGGC CGGTGTCGTC GAGGACGTCA CCGCCGACTA CGTCACCGTC 
ATGGCCGACG ACGGCACGCG CAAGACGTAC CGCATGGGCA AGTTCCAGCG CTCCAACCAG 
GGCACCTGCT TCAACCAGCG GCCGATCGTG GCCGAGGGCC AGCGGGTCGA GGAGCGCCAG 
GTCCTCGCGG ACGGCCCCTC CACCGACCAG GGTGAGATGT CGCTGGGCAA GAACCTGCTC 
GTGGCGTACA TGTCCTGGGA GGGCCACAAC TACGAGGACG CGATCATCCT CTCCCAGCGC 
CTGGTGCAGG ACGACGTCCT GTCCTCGATC CACATCGAGG AGCACGAGGT CGACGCCCGC 
GACACCAAGC TGGGCCCGGA GGAGATCACC CGCGAGATCC CCAACGTCAG CGAGGAGGTC 
CTGGCCGACC TCGACGACCG GGGCATCATC CGCATCGGCG CCGAGGTCGT GGACGGCGAC 
ATCCTCGTCG GCAAGGTCAC GCCCAAGGGC GAGACCGAGC TGACCCCGGA GGAGCGCCTG 
CTGCGCGCGA TCTTCGGAGA GAAGGCGCGC GAGGTCCGCG ACACCTCGCT CAAGGTGCCG 
CACGGCGAGA CCGGCAAGGT CATCGGCGTC CGCGTGTTCA GCCGCGAGGA CGGCGACGAG 
CTCGCCCCCG GCGTCAACGA GATGGTCCGC GTCTACGTGG CCCAGAAGCG CAAGATCACC 
GACGGTGACA AGCTCGCGGG CCGCCACGGC AACAAGGGCG TCATCTCCAA GATCCTGCCC 
CAGGAGGACA TGCCCTTCCT GGAGGACGGG ACGCCGGTCG ACATCATCCT CAACCCGCTG 
GGCGTGCCCG GCCGTATGAA CGTCGGCCAG GTCCTGGAGG TCCACCTGGG CTGGTTGGCC 
AAGAACGGCT GGCTGGTCGA GGGGGTCGAG GAGGAGTGGC AGAAGTCGCT GGAGGCCATC 
GGCGCCACCG ACGTGCCGCC GGACTCCCGC GTGGCCACGC CGGTCTTCGA CGGCCTGCGC 
GGCGACGAGC TCAGCGGCCT GATCAAGTCG GTGCGCCCCA ACGCGGACGG CAACCGCCTG 
ATCAACGAGG ACGGCAAGGC GCGTCTGTTC GACGGCCGCA CCGGCGAGCC CTTCGCCGAG 
CCGATCTCCG TCGGCTACAA GTACATCCTC AAGCTCCACC ACCTCGTGGA CGACAAGATC 
CACGCGCGCT CCACCGGCCC GTACTCCATG ATCACCCAGC AGCCGCTGGG CGGTAAGGCG 
CAGTTCGGCG GTCAGCGCTT CGGTGAGATG GAGGTGTGGG CGCTGGAGGC CTACGGCGCC 
GCCTACGCCC TCCAGGAGCT GCTCACCATC AAGTCCGACG ACGTGGTGGG ACGGGTCAAG 
GTCTACGAGG CCATCGTCAA GGGCGAGAAC ATCCCCGAGC CGGGCATCCC TGAGTCCTTC 
AAGGTGCTCA TCAAGGAGAT GCAGTCGCTC TGTCTGAACG TGGAGGTGCT GTCCAGTGAC 
GGTATGTCCA TCGAGATGCG GGACAGCGAC GAGGACGTCT TCCGCGCGGC GGAAGAACTG 
GGAATCGACC TGGGTCGGCG GGAGCCGAGC AGTGTCGAAG AGGTCTAA 

 

Protein sequence

MAASRNASAN ALGPHRVSFA RIQEPLEVPN LLALQTESFD WLLGNDRWKT RVETARNAGR 
KDVPEQSGLE EIFEEISPIE DFSGTMSLSF RDHRFEPPKY SEDECKDRDM TYSAPMFVTA 
EFINNDTGEI KSQTVFMGDF PLMTETGTFI INGTERVVVS QLVRSPGVYF DKSVDKTSDK 
DLYGCKVIPS RGAWLEFEVD KRDFVGVRID RKRKQGVTVL LKALGWTTDQ ILERFGQYES 
IRNTLEKDPT AGTDDALLDI YRKLRPGEPP TKESAQALLE NLYFNPKRYD LAKVGRYKIN 
KKLGLDTDYR QGTLTEEDIV ATIDYLVRLH AGETEKETVN GPRPIETDDI DHFGNRRLRT 
VGELIQNQVR LGLARMERVV RERMTTQDVE AITPQTLINI RPVVASIKEF FGTSQLSQFM 
GQTNPLEGLT HKRRLSALGP GGLSRERAGF EVRDVHPSHY GRMCPIETPE GPNIGLIGSL 
AAYGRVNSFG FVETPYRRII DGKVSDQVDY LTADEEDLHV IAQANTPMNP DGSFAEAGVL 
VRRKGGEFEQ VSTDEVDYMD VSPRQMVSVA TAMIPFLEHD DANRALMGSN MQRQAVPLLM 
AESPFVGTGM EYRAATDAGE VVLAQKAGVV EDVTADYVTV MADDGTRKTY RMGKFQRSNQ 
GTCFNQRPIV AEGQRVEERQ VLADGPSTDQ GEMSLGKNLL VAYMSWEGHN YEDAIILSQR 
LVQDDVLSSI HIEEHEVDAR DTKLGPEEIT REIPNVSEEV LADLDDRGII RIGAEVVDGD 
ILVGKVTPKG ETELTPEERL LRAIFGEKAR EVRDTSLKVP HGETGKVIGV RVFSREDGDE 
LAPGVNEMVR VYVAQKRKIT DGDKLAGRHG NKGVISKILP QEDMPFLEDG TPVDIILNPL 
GVPGRMNVGQ VLEVHLGWLA KNGWLVEGVE EEWQKSLEAI GATDVPPDSR VATPVFDGLR 
GDELSGLIKS VRPNADGNRL INEDGKARLF DGRTGEPFAE PISVGYKYIL KLHHLVDDKI 
HARSTGPYSM ITQQPLGGKA QFGGQRFGEM EVWALEAYGA AYALQELLTI KSDDVVGRVK 
VYEAIVKGEN IPEPGIPESF KVLIKEMQSL CLNVEVLSSD GMSIEMRDSD EDVFRAAEEL 
GIDLGRREPS SVEEV