Gene Ndas_4665 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNdas_4665 
Symbol 
ID9248547 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNocardiopsis dassonvillei subsp. dassonvillei DSM 43111 
KingdomBacteria 
Replicon accessionNC_014210 
Strand
Start bp5541684 
End bp5543273 
Gene Length1590 bp 
Protein Length529 aa 
Translation table11 
GC content70% 
IMG OID 
ProductBerberine/berberine domain protein 
Protein accessionYP_003682557 
Protein GI297563583 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.293743 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCCACA GCCACGGCAT TCCTCCCCTG ACCACCGTCA AGCCCTCCGA CAAGCGCTAC 
CCAGCCCTCG ACCGGGGGTT CAACCAGCGT TGGATCGCCC GTCCCGACTA CGTGCGGTTG
GTGGCCACAC CCGAGGGCGC CGCCCGCGCC CTGTCCGAGG CGGTCAACCG GACGACCGCG
GACCTGGACC GCACACGGAT CACCGTGCGC TCGGGCGGCC ACTGCTACGA GGACTTCGTC
TGCGGCGACG ACGTCCGCGT GATCCTGGAC GTCAGCCCCA TGTGCGGGAT CGGCTACGAC
CCCGGACTGG AGGCGTACTG CGTGGAGGCG GGCGCCACCA ACTGGCACGC CTACAGCCAC
CTGTATCCGC TCAGCGGGAA GGCCCTGCCG GGCGGGTCCT GCTACTCGGT CGGCATGGGC
GGGCACATCA CCGGGGGCGG CTACGGTCTG CTCTCCCGCC AGTACGGGCT CACCGTGGAC
TACCTGTACG CGGTGGAGGT GGCGGTGGTG CGCCCCGACC GCTCGGTCGA ACTCGTCCTG
GCCACCCGGG ACGACCCCGA CCCCGACCGC CGGGAGCTGC TGTGGGCGCA CACCGGGGGC
GGCGGCGGGA ACTTCGGGAT CGTCACCCGG TTCTGGTTCC GCGACCTGCC CGAACCCCCG
TCGAACGTGC TGCTCAGCGG CCTCTCGTGG AAGTGGTCGG ACTTCACCAA GGACGACTTC
GCCGCCCTGG TCACGGCGTA CGGCGAGTAC TTCCGCGACC ACCAGGACCC GGACGAGGCG
TCCGGCAGGC TCTTCGCGCT GCTCAAGCTC AACCACGTCA GCAACGGGGA GATCGGCCTC
GTCGCCCAGG TCGACGCCGA CGACCCCGAG GGCGGGCGGG CCATGGAGGA GTTCCTGGAC
GCCGTCGACG GCCGGATCGC ACCGAAGTCC GGGCAGATGA CGACCCCCAT GGGGGAACAC
CCCGCGGTCC AGGGCATGCA GACCCCCCGG AGGCTGCCCT GGCTGACGGC CACCCAGGTA
CTCAACGGCT CCGGCGAGAA CCAGTGCGGC AAGTACAAGT CGGCCTACCT GCGCAAACCC
TTCAGCCCGG CGCAGATCGA GGCCATGTGG GCCTATCTGG GCAAGGAGCA CTACACCGAC
TACGTCAACA AGGAGGCCCT GATCCAGGTC GACTCCTACG GCGGGGCCGT CAACCAGCCG
CCGGCGGACA CCGCCGTGCC CCAGCGCGAC TCCGTGCTCA AGGTGCAGTA CCAGGTCTAC
TGGAAGCGCA CCGAGCCGGA GTCAGCCGTG GCCGGGCACC TGGCGTGGAT CCGCGACGTC
TACCGCAAGA CGTTCGCGTC CACCGGCGGG GTCCCCGTGA TCGGAGACGC CACCGACGGG
TGCTACGTCA ACTACCCGGA CGTCGACCTG AGCGACCCGG CCTGGAACAC CTCGAAGGAC
CGCTGGTCGA AGCTCTACTA CAAGGACTCC TACCCCCGGC TCCAGCGGGT GAAGGAGCGG
TGGGACCCGC TCAACGTGTT CCGGCACCGG CAGTCGGTCG AACTCCCCGC GTCGGCGGGC
GATGCCGGTC AGGGCTCCGG ATCCTCCTGA
 
Protein sequence
MSHSHGIPPL TTVKPSDKRY PALDRGFNQR WIARPDYVRL VATPEGAARA LSEAVNRTTA 
DLDRTRITVR SGGHCYEDFV CGDDVRVILD VSPMCGIGYD PGLEAYCVEA GATNWHAYSH
LYPLSGKALP GGSCYSVGMG GHITGGGYGL LSRQYGLTVD YLYAVEVAVV RPDRSVELVL
ATRDDPDPDR RELLWAHTGG GGGNFGIVTR FWFRDLPEPP SNVLLSGLSW KWSDFTKDDF
AALVTAYGEY FRDHQDPDEA SGRLFALLKL NHVSNGEIGL VAQVDADDPE GGRAMEEFLD
AVDGRIAPKS GQMTTPMGEH PAVQGMQTPR RLPWLTATQV LNGSGENQCG KYKSAYLRKP
FSPAQIEAMW AYLGKEHYTD YVNKEALIQV DSYGGAVNQP PADTAVPQRD SVLKVQYQVY
WKRTEPESAV AGHLAWIRDV YRKTFASTGG VPVIGDATDG CYVNYPDVDL SDPAWNTSKD
RWSKLYYKDS YPRLQRVKER WDPLNVFRHR QSVELPASAG DAGQGSGSS