Gene Ndas_4280 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNdas_4280 
Symbol 
ID9248154 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNocardiopsis dassonvillei subsp. dassonvillei DSM 43111 
KingdomBacteria 
Replicon accessionNC_014210 
Strand
Start bp5095450 
End bp5097612 
Gene Length2163 bp 
Protein Length720 aa 
Translation table11 
GC content70% 
IMG OID 
Productcholine/carnitine/betaine transporter 
Protein accessionYP_003682175 
Protein GI297563201 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.692689 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCCACCG ACGGAGGGCA GCACCGTCCG GACCGCGAAC CGGAGCCGGA AGCCGAGCCG 
GAGCCGGAAA CCGGACCGGA GACCCCCGAG GAGGCGGAGC GCGGTCCGAG CCGCCTCAAA
CCGGTCGTGT TCTACGGCTC GTCCGCGCTG ATCGTCGCGC TCTCGGTCTG GGCGATCGTC
GCGCCCACGC ACGCCGGGAA CACCATCGGC GCCGTCGTGA CGTGGATCAC CGAGGTGTTC
GGCTGGTACT ACTTCCTCGC CACCACCCTC TACCTCGGGT TCGTGGTGGT CATCGCGCTC
TCCCGCTACG GCAGGGTCAA GCTCGGCCCC CAGCACTCCA AGCCCGACTA CGGGGTGTTC
GCCTGGGCGG CCATGCTGTT CGCGGCGGGC ATCGGCATCG ACCTGCTGTT CTTCTCCGTC
TCCGGGCCGG TCAGCCACTA CCTGGCGCCG CCCGAGGGCG ACGCGCAGAC CGTCGAGGCG
GCGCGGCAGG CCGTGGTGTG GACGCTCTTC CACTACGGCG TGACCGGGTG GGCGATGTAC
GCGCTGATGG GCATGGCCCT GGGCTACTTC TCCTTCCGCT ACCACCTGCC CCTGGCCATC
CGGTCGGCCC TGTACCCGCT GATCGGCAGG CGCATCCACG GCCCGGTCGG CGACGCGGTC
GACCTGGCGG CCGTCATCGG CACGATCTTC GGCATCTCCG TGTCGCTCGG CATCGGCGTC
GTGCAGCTCA ACTACGGGCT CAACTTCCTC TTCGGCGTCC CCGAGGGCGT CGCGGCCCAG
CTCGGCCTGA TCATCGTCGC CGTGCTCGTG GCCACGATGT CGGCGGTGGC GGGCGTGGAC
CGGGGTATCC GGCGGCTGTC CGAGATCAAC GTCGTGCTAG CCGTCGTCCT GATGCTCTAC
GTGCTGGTCT TCGAGGACCC CCTCTACCTG CTCAACGCCC TCGTCCTCAA CATCGGCGAC
TACCTCAGCC GCTTCCCCTC CATGACGCTG AACACCTTCG CCTACGACCC GCCGACCGAC
TGGCTCAACG CCTGGACGCT GTTCTTCTGG GCCTGGTGGA TCGCCTGGGC GCCGTTCGTG
GGGATGTTCC TCGCCCGGAT CTCGCGCGGC CGCACCATCC GGCAGTTCGT GGCGGCGACG
CTGGTGGTCC CGCTCCTGTT CACGCTGACC TTCCTGTCCT TCTTCGGCAA CAGCGCGCTG
AGCGTCGTGC GCGAGGGCGG CGCCGCGTTC GGCCAGACCA CCATGAACCA CCCCGAACAG
GGCTTCTACG CGCTGCTCGC GCAGTACCCG GGGGTGCTGT TCAGCGCCGG GCTGGCCACG
GTCGTCGGAC TGCTCTTCTA CGTCACCTCC GCCGACTCCG GCGCGCTGGT GATGGGCAAC
CTCAGCTCCC ACCTGCCGAC GCCGCTCACC GACGCCTCCC CGTGGCTGCG CGTCTTCTGG
TCGGCGGCGA CCGGCCTGCT CACCCTCGCC ATGCTCCTGG TCGGCGGGGT GGACACGCTG
ACCAGCGCGA CCATCATCAT GGGCCTGCCG TTCTCGTTCG TGATGTTCGT GATCATGTGG
GGCCTGTTCA AGGCGCTGCG GATCGAGAAG TTCCGCAAGG ACGCCTTCCG GACCACCCTG
TCCTCGTCGC TGTCGGACCG GACCGCGGCC GACCGGCGGG GGCCCGAACG CAACTGGCGG
CAGCGGATCA AGCGGGCGGT GAGCTTCCCC GGCAGGCGGG CGGCCGAGCG GTTCGTCCGC
GACGTGTGCC GCCCGGCGTT CCGGGACGTC GCCGAGGAGC TGCGCGAACA CGGCGCGGAG
GCGTCGGTGA GCGAGGGGGT GGACGAGGCC GTCGGCATCG CCTACCTGGA GCTGCGGGCG
CCGATGGGCG AGGAGGAGGA GTTCAGCTAC CGGGTGTGGC CGATGGAGGT GCCCACCCCC
GCGTTCGCCA TGCGCTCGCT CGCCGAGCAC GACACCTACG TGCGCTTCGA GGTCTACCTC
ACCGAGGGCA GCCAGGGCTA CGACGTGATG GGCTACACCA AGGAGCAGCT CATCGGCAAC
ATCCTCGACG AGTACGAGCG GCACCTGGAG TTCCTGCGGC TGCACCGGGA GGCGACCTCG
GGCTCCGCGC TTCCCGACCA CGGGCCGGGC ACCGCCGACG TCCAGGACAC CGAGGAGCGC
TGA
 
Protein sequence
MATDGGQHRP DREPEPEAEP EPETGPETPE EAERGPSRLK PVVFYGSSAL IVALSVWAIV 
APTHAGNTIG AVVTWITEVF GWYYFLATTL YLGFVVVIAL SRYGRVKLGP QHSKPDYGVF
AWAAMLFAAG IGIDLLFFSV SGPVSHYLAP PEGDAQTVEA ARQAVVWTLF HYGVTGWAMY
ALMGMALGYF SFRYHLPLAI RSALYPLIGR RIHGPVGDAV DLAAVIGTIF GISVSLGIGV
VQLNYGLNFL FGVPEGVAAQ LGLIIVAVLV ATMSAVAGVD RGIRRLSEIN VVLAVVLMLY
VLVFEDPLYL LNALVLNIGD YLSRFPSMTL NTFAYDPPTD WLNAWTLFFW AWWIAWAPFV
GMFLARISRG RTIRQFVAAT LVVPLLFTLT FLSFFGNSAL SVVREGGAAF GQTTMNHPEQ
GFYALLAQYP GVLFSAGLAT VVGLLFYVTS ADSGALVMGN LSSHLPTPLT DASPWLRVFW
SAATGLLTLA MLLVGGVDTL TSATIIMGLP FSFVMFVIMW GLFKALRIEK FRKDAFRTTL
SSSLSDRTAA DRRGPERNWR QRIKRAVSFP GRRAAERFVR DVCRPAFRDV AEELREHGAE
ASVSEGVDEA VGIAYLELRA PMGEEEEFSY RVWPMEVPTP AFAMRSLAEH DTYVRFEVYL
TEGSQGYDVM GYTKEQLIGN ILDEYERHLE FLRLHREATS GSALPDHGPG TADVQDTEER