Gene Ndas_4072 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNdas_4072 
Symbol 
ID9247944 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNocardiopsis dassonvillei subsp. dassonvillei DSM 43111 
KingdomBacteria 
Replicon accessionNC_014210 
Strand
Start bp4868014 
End bp4870671 
Gene Length2658 bp 
Protein Length885 aa 
Translation table11 
GC content71% 
IMG OID 
Productprotein-export membrane protein SecD 
Protein accessionYP_003681974 
Protein GI297563000 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTCCAGTC AAACGGGAGC GGGCGCGCGT TGGACACGCG CCCTCATCTC CCTTCTCGTC 
ATCCTCGTCG CGTTCGGCGC GGCGTGGTTC ATCCCGCCGC GCCTGGGGCT CGACCTCAGC
GGCGGCACAC AGATCGTCCT GGAGACCCAG GACGGCCCCG AGGGCACACC CGCCAACTCC
GAGAACACCG ACCAGGTCGT CGAGGTGCTG CGCCAGCGCA TCGACCGCCT GGGCGTGTCC
GAGGCGACCA TGTCGCGCTC GGGCGAGAAC CGGATCATCG TCGAACTGCC CGGTGTGCAG
GACCCGGCGG AGGCCGCGCA GATCATCGGC CAGACCGCCC AGTTGTCCTT CCACCCCGTG
CTGGGCGTGG GCCAGGCCGG CGGCCAGGGC GTGCAGGCGC CCGCCCCGGG CGACTCCGCC
AACGCCCCGC AGGCCACCGC GGACGAGGCG CGCGCCCCGT CCGACGCCGC GGCCGAGGGC
GGTGACGAGG CCGCCGAGGG CGGCGGCGGG GAGATGACCC AGGAGCAGCT CGAAGAGCTC
ATGGCTCAGC AGGGCGGCAT GGGCGGCCAG CAGCCCCCCG CCGGCCCCAG CGCGGAGAAC
CCCGAGGACG TCGTGATGAC GCTCCCCGAC TCCGACGGCA CCCAGCTCCA GCTCGGCGAG
ACCGCCATCA AGGGCGACCA GGTGGCCAGC GCCGAGGCCG CGCTGGACAG CGTCAACCGC
GCGCAGTGGA CGGTCAACGT CAACTTCCGC GGCGAGGGCG CCGACCAGTG GACCGCGCTG
ACCGCCGACG CCGCCTGCTA CGAACAGGGC GACCCGCGCC GCCGCGTGGC CATCGTGCTG
GACGGGCAGA TCATCTCCGC CCCGGAGGTG AACCCGGAGT TCTCCTGCGA CGTGGGCATG
CCCGGCAACA CCACCACCAT CACCAGCCCC GACTTCACCA GTGAGACCGC CAACGACCTG
GCCGTGCTGA TCGAGGGCGG CTCGCTGCCG CTGCCGGTCA CCGAGGTCCA GCGCCAGACG
GTCGGCCCGA CCCTGGGCGC CGAGGCCATC CAGGCCAGCG CCGTCGCCGC GATCCTGGGC
CTGGCCTTCA CCACGCTCTA CATCACGCTG GTCTACCGGC TGGTCGGCTT CCTGGCCGCC
CTGGCCCTGG GCTTCTACAC GCTCATCGCC TACGGCGCCC TGGTCGCCAT CAACGCCACA
CTGACGTTGC CGGGCCTGGC GGGTTTCGTG CTGGCGATCG GTATGGCCAT CGACGCCAAC
GTGCTGATCT TCGAACGCAC ACGTGAGGAA CACCAGCGCC AGGCGAAGGT CTACGAGGCC
AACAAGTCCG CCGGGCTGCG GGACGCCACC GAGGACGAGG CGGCCAAGGC CGAGTCCGGG
GTGCTCACCC GCAAGCGGCG CCGGGCGGTG CCGCCGAGCC TGGAGAAGGC GTTCGTCGTG
GGCTCCCGCA AAGCGTGGAG CGCCGTCCTC GACACCAACA TCACCACGCT CATCGCCGCC
GCCCTGCTGT TCTTCTTCGC CTCGGGCACC GTGCAGGGCT TCGGCGTGAC CCTGAGCATC
GGCACCCTCG TCTCGATGTT CTCCGCGCTG GTCATCGCGC GCGTGTTCGT CGAGTGGGCG
GTGCGGCGCG CGGTCGTGCG CAAGCACCCG GCCGTCAGCG GCCTGAACCG CATCGGCGGC
GTCCGCACCT GGCTGGTCGA GAAGAACCCC GACCTCATGG GCCACCGCGC CAAGGGTCTG
ATCGTGGCGG GTCTGATCGT GGCGGCCGCG GTCGCCGCGC CACTGATCCG CGACACCAAC
CTCGGTGTGG AGTTCACCGG CGGCCGCGTG CTGGAGTACG AGGTCACCAG CGGGGAGGGC
GTCTCGGTCG ACGAGGCCCG CTCCGTCATC TCCGCGCTGG ACTTCCCCGG CTCGGACACG
GCCGTGGTCC AGGAGTCCGG TGACGGCGAC ATCTCGGTGC GCACCGGCAG CATCTCCGAC
GACGACGCGG CCCGGATCGC CGACGCCCTG GGCGAGCAGA CCGGCGGCGT GGAACTGGTC
AGCGACGAGC TGATCGGCCC GAGCATGGGC GACGAGCTGC GCAACCGCGC GCTGATCGCC
CTGGGCGCGG CCCTCGCGCT CCAGATGGTC TACCTGGCCT GGCGCTTCCG CTGGTCGTTC
GGCGTGTCCA CCATGCTGTC GCTGGCCTTC AACCTGGTCC TGGTGATCGG GCTGTTCATC
TGGCTGGGCA AGCCGATCGA CGGCGTGTTC CTCGCCGCGC TCCTGAGCGT CATCGGCTTC
TCCGTCAACG ACACGGTGGT GGTGTTCGAC CGGGTGCGCG ACGAGTGGGC CCGGGACGAG
AGGTCGAAGT TCTCCGAGAT CGCCAACCGC GCGGTGCTCA ACACCCTGCC GCGTACCGTC
AACACCTCCA TCGGCGCGCT GATCATCCTG GGCTTCCTGA CCTTCCTCGG CGGGTCCTCG
CTCCAGGACT TCTCGATCGC CATGCTGGTG GGTCTGGTGA CGGGCGTCCT CTCGACGATC
TTCGTCGCCG TCCCGCTGGC CATCTGGCTC CAGAGGTGGG ACAGGACCGA CCCGCCGCAC
GTGGTCAAGG AGCGCAAGGC CAAGCAGAAG GTGGCCGCCA AGGCCGCCCG CGAGGCCGAC
GACGGCGCCG TCGTCTAG
 
Protein sequence
MSSQTGAGAR WTRALISLLV ILVAFGAAWF IPPRLGLDLS GGTQIVLETQ DGPEGTPANS 
ENTDQVVEVL RQRIDRLGVS EATMSRSGEN RIIVELPGVQ DPAEAAQIIG QTAQLSFHPV
LGVGQAGGQG VQAPAPGDSA NAPQATADEA RAPSDAAAEG GDEAAEGGGG EMTQEQLEEL
MAQQGGMGGQ QPPAGPSAEN PEDVVMTLPD SDGTQLQLGE TAIKGDQVAS AEAALDSVNR
AQWTVNVNFR GEGADQWTAL TADAACYEQG DPRRRVAIVL DGQIISAPEV NPEFSCDVGM
PGNTTTITSP DFTSETANDL AVLIEGGSLP LPVTEVQRQT VGPTLGAEAI QASAVAAILG
LAFTTLYITL VYRLVGFLAA LALGFYTLIA YGALVAINAT LTLPGLAGFV LAIGMAIDAN
VLIFERTREE HQRQAKVYEA NKSAGLRDAT EDEAAKAESG VLTRKRRRAV PPSLEKAFVV
GSRKAWSAVL DTNITTLIAA ALLFFFASGT VQGFGVTLSI GTLVSMFSAL VIARVFVEWA
VRRAVVRKHP AVSGLNRIGG VRTWLVEKNP DLMGHRAKGL IVAGLIVAAA VAAPLIRDTN
LGVEFTGGRV LEYEVTSGEG VSVDEARSVI SALDFPGSDT AVVQESGDGD ISVRTGSISD
DDAARIADAL GEQTGGVELV SDELIGPSMG DELRNRALIA LGAALALQMV YLAWRFRWSF
GVSTMLSLAF NLVLVIGLFI WLGKPIDGVF LAALLSVIGF SVNDTVVVFD RVRDEWARDE
RSKFSEIANR AVLNTLPRTV NTSIGALIIL GFLTFLGGSS LQDFSIAMLV GLVTGVLSTI
FVAVPLAIWL QRWDRTDPPH VVKERKAKQK VAAKAAREAD DGAVV