| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpau_4226 |
|---|
| Symbol | |
|---|
| ID | 9158414 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Tsukamurella paurometabola DSM 20162 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014158 |
|---|
| Strand | + |
|---|
| Start bp | 4358976 |
|---|
| End bp | 4362635 |
|---|
| Gene Length | 3660 bp |
|---|
| Protein Length | 1219 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | |
|---|
| Product | virulence factor MVIN family protein |
|---|
| Protein accession | YP_003649133 |
|---|
| Protein GI | 296141890 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.105203 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCGCG CCGAGCCTCG GCACATTCCG CCGCGCAAAG GCACCGTCGC CACCGACGCC
GGTGGCAGCG ACGACGGTGG CACGTCGAGT CTGCTGCGTT CGACCGGCTC CGTCGCCATC
GCCACTCTCA CCTCACGCCT GACCGGCTTC CTGCGGACGG TACTGCTGGC CGCGATCCTC
GGCGGGGCCG TCTGGTCGTC GTTCACCGTC GCCAACCAGA TGCCCCAGCA GGTCTCCGAG
CTGGTGCTGG GCCAAGTGCT GGCGGCGCTG GTGATCCCGG TGCTGATCCG CGCCGAGATG
GAGGACAAGG ACCGCGGTCA GGCCTTCTTC GAGCGGCTGT TCACCATGTC GCTGGTGATC
CTCGGCGGGG CGCTGATCAT CGCGATGCTG ATCTCGCCGC TGCTGGTCGG CTGGCTGGTG
GGCAAAGCCG ACAGCCAGGT CAACGCTCCG CTCACGCAGG CACTCGTCTA TCTGCTGCTC
CCGCAGCTGG TTTTCTACGG GCTGTCTGCG CTGTTCACGG CCGTGCTCAA CACCCGCGCG
GTGTTCCGGC CCGGTGCCTG GGCGCCGGTC GCGACCAACG TCATCCAGAT CGGCACGCTG
GTGCTGTTCT ACCTGATGCC GGGCGAGCTC ACCCTGAACC CGGTCGAGAT GAGCGATCCC
AAGCTCCTCG TCCTCGGGCT CGGAAGCACT CTCGGCGTGA TCGTGCAGGC CTGTATCCAG
CTGCCTGCAC TGAAGCGCTC CGGCATCAAA CTCCGGCTGC GTTGGGGTGT CGACGACCGG
CTCAAGCACT TCGGCGGTAT GGGCGTGGCG ATCATCGCCT ACGTCTTCAT CTCGCTGCTC
GGCTCGTACC TGGTGACCCC GGTCGCCGCG GCGGCCTCGG AGACGGGGCC CGGTGTTTAC
GCCAACGTCT GGCTGGTGTT GCAGCTGCCC TACGGTGTCC TCGGCGTCGC GCTGCTGACG
GCCGTGATGC CGCGCCTGTC CCGGCATGCG GCGGAGGGGA ACCGCACCGC CGTCGTCGAC
GACCTCTCGC TGGCCACCCG GATCACCATG GTCGCGCTCG TCCCGGTCGT GGCTTTCGCC
ACCGCGTTCG GCCCGTCCAT CGGGCGCGCA CTGTTCAACT ACGGCCAGAT GTCCGTCGCC
GAGGCCAACC ACCTCGGTAC GGCCATCTCG TTCGAGGCAT TCGTCCTGAT TCCCTACGCG
ATGGTGTTGA TCCATCTTCG GGTGTTCTAC GCCCAGGAGC GGCCCTGGAC ACCCACGTTC
ATCGTGCTCG CGATCACCGG GGTCAAGACC GGTCTGTCCT ATCTGGTGCC GCAGTTCGTC
GATGACGGCA ACCGGGTGGT GGAGTTGCTC GGAACCGCGA CCGGTCTCGC GTACGCGGCC
GGAGCACTCG TGGGCTGGAT CCTGCTCCGC CGGAATCTCG GCCGGATGCA GCTGACCAAT
GTGGCCCGCA CCCTGCTCCA GACCACCGCG GTATCCGCCC TGGTCGTGGT CACCGTGTAC
GCGATCATGC ACGTGAGTGT GCTGCAGAAG CTGGACAAGA GCGGACCGCT CGGCGCGCTG
ATCTACCTCG CCCTCGCGGG CGTGCTCTCC ATGACGCTGA TCTACGCGCT GCTGGCTCTG
TGGCGTGTGC CGGACGTGCT GGCGATCCTG GCACCTCTGC GCCGCATCGC GGGCCGGTTC
GTGCCCGCCC TGCGGCCGGC GGCACCGTCG GCGCCCGCAC CCGCGCGCGA ACCCGCCGAG
GCGGTCACCG CCGAGTTCCG GCTCGAGGAA CTCGAGCGCT TCGCCAGCCT CCGGCAGGAG
GAGATCACCG CCCAGATGCC GAGGATCGCC GACGATATCG GCCTCCCGTA TGCTGGCCAA
AGCCATGTTC CCCGGCGGTC GGAGGCACGT GCCGACAATC CGACCACTGG TCTCAGGTAC
CGCAGAAGAG GAGCATTCGC AGTGACCGAG GACGACTCCG CACGCCCCAC CGGACCCGCA
GCCCCGGGCA CCGGTCCGAT GCCGCTGCCG TCCACCCCGC AGCCCGCCGC CGGGCAGCCC
GGAGCGCCCG CGCCGATCGA CGGATACGAC GATGCGCCGC GCGGCCCCCA GCTGATCCCC
GGTGCCGTTG TGGCCGGCGG CCGCTACCGG CTCACGGAGC ATTACGGCGG CATCCGCGGT
CTCCAGTTCT GGCAGGCCCG CGATATCAAC CTCGACCGCG ATGTGGCACT CACCTTCGTC
GACTCCGAAC AGCGCGAGCC GGTGCCCGAG CGCGGCGCAC AGATCAGTAT GCGCGGCGAG
GGCCCGCAGT CGATTCTCTC CCGCACGCTG CGCCTGGGCC GCGTGCATTC CAACGGCCTG
GCCCGCGTGC TCGACGTGGT ACGCGGTAGC TCCGGCGGCA TCGTGGTCGC GGAGTGGATC
CCCAGTTACT CCCTGGCCGA CGTGGCCGGA ACCCACCCGT CGGCGATCGC CGCCGCGAAG
GCGGTGCGCT CACTCGCCAG CGCCGCCGAG GGCGCCCACC GGGCAGGTGC GGCGCTGTCG
ATCGACCATC CCGACCGGGT CCGGATCTCG CAGGACGGCA ACGCCTTCCT GGCCTTCCCC
GGCACCCTGG CCGATGCCAC CAAGGAGTCG GATGTCCGCG GCCTCGGTGC GGTGCTCTAC
GCGCTGCTGC TGGAGAAGTG GCCGCTGGAC GAGACCACGG GCCGCATCGT GACCACCGGC
TCGGGCACCG TATCCGGCCT GCAGCAGGCC GACGCGGATG CCGCCGGTAA CCCCGTCGAA
CCCCGGGATG CCAAGAGCGA CATCCCGTTC GAGATCTCCG CCGTCGCCAC CCGCACCCTC
GAGGGCGGGC AGGGCATCCG CACCGCGGCC ACCGTGCAGC AGTTGTTGGA TCAGGCCTCG
GTGGTCGATG TGAAGACCGA CCTGCTGGCC GCAGTGCGCG ACGATGCGCC CGCCGCGGCC
CGGCCCGCCG CCGCGACCGC CGCCCCCGCC GCACAGCAAT CGCTGCAATC GCGGCCCACA
CCGCCGAAGC GGGTGCAGAC CGGCAAGCGG CCGAAGAACG TTCCCCTGCT CATCATCGCG
GCCTGCGCCG TGGTGCTCCT GTTGATCATC GGCCTCACGC TGCTGATCAG CAGTCTGACC
AGTGAGAAGG ACACGCAGTC CGGTGTGGGT TCGTTGTACC CGGCGGGACA GAGTTCGTCC
ACCATCGCGG CGCCGGCGGC GCCCGGGATC GGTTCGCCGG TGAAGGCGAC CGCCGTCTCA
CTGGTGGACT TCTCGTCGAA CAAGGACTCG GCGGTGAACA TCGGCAACGT CCTCACCGGC
CAGGAGCCCG CGTGGAAGAC CGACACCTAC AAGGCCGGAC CCGTGTTCGG AAACCTGAAA
AAGGGCGTGG GACTGTTGAT CACGCTGGAC AAGCCGGTCT CGTTGACCGG TGGCGCGATC
ACCTCGCCGA GTGCGGGATC CACGATCGAG GTACGCACCT CGTCGAAGGA GACGGTGAAG
TCGATCGACG AGACCTCGGT GGTCTGGTCG GGCACGCTGC GTCCGGGCGC CAACAACTTC
CACGTCAGTG CGGTGGCACC GCGCACGAAG TACGTGGTCG TGTGGATCAC CGGCCTCACC
AAGGTCGAGG GCAACGACTG GTACACCACG ATCAACCAGG TGTCCTTCCA GGGCACGTAG
|
|---|
| Protein sequence | MSRAEPRHIP PRKGTVATDA GGSDDGGTSS LLRSTGSVAI ATLTSRLTGF LRTVLLAAIL
GGAVWSSFTV ANQMPQQVSE LVLGQVLAAL VIPVLIRAEM EDKDRGQAFF ERLFTMSLVI
LGGALIIAML ISPLLVGWLV GKADSQVNAP LTQALVYLLL PQLVFYGLSA LFTAVLNTRA
VFRPGAWAPV ATNVIQIGTL VLFYLMPGEL TLNPVEMSDP KLLVLGLGST LGVIVQACIQ
LPALKRSGIK LRLRWGVDDR LKHFGGMGVA IIAYVFISLL GSYLVTPVAA AASETGPGVY
ANVWLVLQLP YGVLGVALLT AVMPRLSRHA AEGNRTAVVD DLSLATRITM VALVPVVAFA
TAFGPSIGRA LFNYGQMSVA EANHLGTAIS FEAFVLIPYA MVLIHLRVFY AQERPWTPTF
IVLAITGVKT GLSYLVPQFV DDGNRVVELL GTATGLAYAA GALVGWILLR RNLGRMQLTN
VARTLLQTTA VSALVVVTVY AIMHVSVLQK LDKSGPLGAL IYLALAGVLS MTLIYALLAL
WRVPDVLAIL APLRRIAGRF VPALRPAAPS APAPAREPAE AVTAEFRLEE LERFASLRQE
EITAQMPRIA DDIGLPYAGQ SHVPRRSEAR ADNPTTGLRY RRRGAFAVTE DDSARPTGPA
APGTGPMPLP STPQPAAGQP GAPAPIDGYD DAPRGPQLIP GAVVAGGRYR LTEHYGGIRG
LQFWQARDIN LDRDVALTFV DSEQREPVPE RGAQISMRGE GPQSILSRTL RLGRVHSNGL
ARVLDVVRGS SGGIVVAEWI PSYSLADVAG THPSAIAAAK AVRSLASAAE GAHRAGAALS
IDHPDRVRIS QDGNAFLAFP GTLADATKES DVRGLGAVLY ALLLEKWPLD ETTGRIVTTG
SGTVSGLQQA DADAAGNPVE PRDAKSDIPF EISAVATRTL EGGQGIRTAA TVQQLLDQAS
VVDVKTDLLA AVRDDAPAAA RPAAATAAPA AQQSLQSRPT PPKRVQTGKR PKNVPLLIIA
ACAVVLLLII GLTLLISSLT SEKDTQSGVG SLYPAGQSSS TIAAPAAPGI GSPVKATAVS
LVDFSSNKDS AVNIGNVLTG QEPAWKTDTY KAGPVFGNLK KGVGLLITLD KPVSLTGGAI
TSPSAGSTIE VRTSSKETVK SIDETSVVWS GTLRPGANNF HVSAVAPRTK YVVVWITGLT
KVEGNDWYTT INQVSFQGT
|
|---|
| |