Gene Tpau_4176 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpau_4176 
Symbol 
ID9158364 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTsukamurella paurometabola DSM 20162 
KingdomBacteria 
Replicon accessionNC_014158 
Strand
Start bp4299049 
End bp4300086 
Gene Length1038 bp 
Protein Length345 aa 
Translation table11 
GC content66% 
IMG OID 
ProductMammalian cell entry related domain protein 
Protein accessionYP_003649084 
Protein GI296141841 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCACGC GGATACGCAC GATCTGGCCC GCACTACTCG CTGCGGTCCT CGTGATCACC 
GGGCTGTGGA GCCTCCGGGA CATCGGACCC GCCACCCTGC CGACGCCGGG CTCCGCAGCC
TCCGGCTGGC GCCTGAAAAT CCAGTTCCCC GACGTCCTGA ATCTTCCCGA TCAGGCGAAG
GTTCGTCTTC TCGGCCGCGA TGTCGGTTCG CTGGAAGGGG TTCGACTGAC GGACAAGAAC
GCGGAGGCGA CCTTGCGGAT CCAGTCGGAT ACCCGGGTGC CGCGCGCCGC CGTCGCGGAG
CTGCGCCAGG ACACGCCGCT CGGAGACATC TACGTCGCGC TCACTCCGCC GAACACCACC
CAGAGCACCG CCTTCTTCGC CGACGGAGAT CTGGTGCCGC AGTCACAGAC CCGGGCACCG
GTCCAGATGG AGCAGATGCT CACCAGCCTC GCCGATTTCC TCGGCAGCGG CAGCCTGAGC
CAGTTGGGCA ACACCTTCGA CCGGCTCAAC AGCAGCTTCC CCGAAGACCC CGCGCTGACC
AAGAAGATCA TCGGCAACCT GACGACGACG GTTGACGCCT GGTCCAACGA CACCAAGAGC
CTCGACACCG CGGTGGTCTC CCTGGTCGAG CTCACGACCA AGCTCGCAGC GCAGCGTGAT
CTCGTGGGCG CCTATCTCGC GCCGGAGGCG GCGCCCCGAT GGAAGACGGT GATCGAGACC
GGCGATATCG TCGCCGTCTT CGCCGCCCTA GCCCCGACGT TCAACAACGC CGCCTTCCTG
GTCCCGACGC TGCGGGAGAC GAACACCCTG GTTCGGGCCG TTCTGCGACC CCTGCTGTAC
TTCGACCGCC CGGCGGGATC GACCCGGCCG GACAACATCG TCAACCTGCG GAATCTGCTA
CGCGACACCG TCATCCCGTA CCTCAGTGAG GGCGCGAAGG TGAACGTGGT CCGGCTCGGT
CTCGGCGATC AGATGCCCAG TGGCGAGCAG GCCGATCAAG CGATCAAGAC ACTGCGCATG
CTGGGGGTGG TCCGATGA
 
Protein sequence
MTTRIRTIWP ALLAAVLVIT GLWSLRDIGP ATLPTPGSAA SGWRLKIQFP DVLNLPDQAK 
VRLLGRDVGS LEGVRLTDKN AEATLRIQSD TRVPRAAVAE LRQDTPLGDI YVALTPPNTT
QSTAFFADGD LVPQSQTRAP VQMEQMLTSL ADFLGSGSLS QLGNTFDRLN SSFPEDPALT
KKIIGNLTTT VDAWSNDTKS LDTAVVSLVE LTTKLAAQRD LVGAYLAPEA APRWKTVIET
GDIVAVFAAL APTFNNAAFL VPTLRETNTL VRAVLRPLLY FDRPAGSTRP DNIVNLRNLL
RDTVIPYLSE GAKVNVVRLG LGDQMPSGEQ ADQAIKTLRM LGVVR