| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpau_3189 |
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| Symbol | |
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| ID | 9157361 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Tsukamurella paurometabola DSM 20162 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_014158 |
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| Strand | + |
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| Start bp | 3293455 |
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| End bp | 3297111 |
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| Gene Length | 3657 bp |
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| Protein Length | 1218 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_003648115 |
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| Protein GI | 296140872 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.905154 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCTGATG CCGCCTCCGC GCCTACCCCC GCACTCTCCG GATTGACCAG GGCGGTCGCC
GCGGACCCGG ACGTCGTCGC GTTCGCCGGC GCGGCCGGAC GCCCCGACCT CACGGTGACC
GCCGTCGACG GGGCCCGCCC GTTCCTCCTC TCGGCGCTGG CCGGTCAGGC GCCCGTCCTG
GTGGTCACCG CCACCGGCCG CGAGGCCGAC GATCTCACCT CGGAACTGCG CGAAACCCTC
GGCGCGGACG CCGTCACCCA GTTCCCGAGC TGGGAGACCC TGCCGCACGA GCGCCTCTCC
CCCGGCGCCG ACACCGTCGG CCGCCGCCTG CAGGTGCTCC GCCGCCTCGC CTGGCCCGAT
GACGCCCAGT ACGGCGCGCC CCTGCGCGCC GTGGTCGCAA CCGTCCGCTC CCTGGTGCAA
CCCATGGCAC CGGGGCTGGG CGATGCCCCG TCGGTCACCC TGCGCGAGGG CGAGGAATTC
GATTTCGAGG AGCTCATCGA AACCCTCGTC GAACTCGCGT ACACCCGCGT CGACATGGTG
GGCAAGCGCG GCGAGTTCGC GGTCCGCGGC GGTATTCTCG ACATCTTCCC CACGACCACG
GATCTCCCTG TGCGCGTGGA ATTCTGGGGT GACGAGATCA CCGACCTGCG CGCCTTCTCC
GTTGCCGACC AGCGCAGCCA GCCCGAGGTG CAGGTGGGCA CGGTGCACGT GTATCCGTGC
CGCGAACTGT TGCTCACCGC CGATGTGCGC GACCGCGCCG CCACGCTCAA GGCGGAGCAC
GAATCCGACG CCGCGCTCGC CGAGATGCTG GAGAAGCTCG CGCAGGGCAT CCCCGTCGAG
GGCATGGAGG CGCTCATCCC CGCCCTGGTA CCGGGCGAAC TGCAACTGCT CACCGATGTG
CTCCCCGACG GCACCCACAC CGTCCTGCTC GATCCCGAGA AGATCCGCAC CCGCGCAGCC
GATCTCGCAC GCACCGGACA GGAGTTCCTG GAAGCCTCCT GGACCGCCGC GGCGTTGGGA
TCCTCCGCTC CGCTCGACCC GAGCGGCATC GACCTCGGCG CCAGCGCCTA CCGCGGCCTG
GACGACGTGC ACGCCTCCGT ATCTGCGCAG GGCCACCCGT GGTGGACCAT CTCGCCGCTC
GCCGCGGGCC CGGACACCGA CGACGATCAC CTCACCGTGC ACGCCGAACA CGCCCCCGCA
CCCCGCGGCT CGGAAGCCGA GGCGGAGAAG CTGTTCGCCA CACTGCGCGC CCACGCCGCA
TCCGGCGGCA GCGGTGTGAT CGTGGTGGCC GGGCGGGGAA CCCGGGCCCG CATTCTGGAG
CGGCTGCGCG ATGCCGAGGT GCCCGCCTCC GAACTCGAGG CGGGAGAGGG GCCCCGCCCG
GGCACCGTCG GCGTGCTCCG CGGCAGCCTG CAGACCGGCT TGACGGTGCC CTCGCAGCAG
CTGGTACTGC TCGCCGAACC CGACCTCACC GGTAACCGGG TGGCGGGCGT CGGTGACGGC
CGCCGGCTTC CGGCCAAGCG CCGCAACCAG GTAGACCCGC TCGCCCTCAC GGCCGGCGAT
CTGGTGGTCC ATGACGAACA CGGCATCGGG AAGTTCGTCG AGATGATCGA ACGCACCGTG
GCCGGGGCGC GCCGCGAGTA CCTGGTGATC GAATATGCGC CCAGCAAGCG CGGCCAACCC
GGCGACAAGT TGTTCGTGCC CATGGAATCG CTCGACCAGC TCTCCCGGTA CGTCGGCGGC
GAGATGCCCG CGCTGTCGAA GATGGGCGGC AGCGATTGGC AGAACACCAA GCGCAAGGCC
CGCAAGGCCG TTCGGGAGAT CGCCGGCGAG CTGGTACAGC TCTACGCCGC CCGCAACGCG
GCGCCCGGCC ACGCGTTCGC GCCCGACAGT CCGTGGCAAC GCGAGATGGA GGACGCCTTC
CCGTTCACCG AGACGGTCGA CCAGATGACG GTGATCGGCG ATGTGAAATC CGATATGGAG
AAGGCGGTCC CGATGGACCG GGTGGTGATC GGCGACGTGG GGTACGGCAA GACCGAGATC
GCCGTACGCG CCGCGTTCAA AGCCGTGCAG GACGGCAAGC AGGTGGCCGT GCTCGTGCCC
ACCACACTGC TCGCACAGCA GCACCTGAAG ACCTTCGTCG ACCGGATGCA GGGCTTCCCG
GTCACGGTGA AGGGCCTGTC CCGCTTCACC GACAGGCACG AGACCGAGCA GGTCCTCGAA
GGCCTGGCCG ACGGCAGCGT GGACATCGTC GTGGGCACGC ACCGACTGCT GCAGACCGGC
GTGCGGTGGA AGGATCTCGG GCTCGTGGTC GTGGACGAGG AGCAGCGGTT CGGGGTGGAG
CACAAGGAGC ACATCAAGGC ATTGCGCACC AACGTCGACG TGCTCACGAT GAGCGCCACC
CCCATTCCCC GCACCCTGGA GATGAGCATG GCGGGCATCC GCGAGATGTC CACCATTCTC
ACCCCACCGG AGGAGCGCCA CCCCGTGCTC ACCTATGTGG GCCCGTACGA CAACAAGCAG
GTGGCCGCCG CCATCCGGCG CGAGCTGCTG CGCGACGGCC AGGTGTTCTA CGTGCACAAC
CGCGTCAGCT CGATCGACAA GGCCGCCAAG CAGATCCGGG ATATGGTTCC CGAGGCGCGC
GTCGTGGTGG CGCACGGCCA GATGGGCGAG GAAGCGCTGG AGAGCACGGT GCAGGGTTTC
TGGAACCGCG AGTTCGACGT GCTCGTGTGC ACCACCATCG TCGAGACCGG CCTGGACATC
TCCAACGCGA ACACCCTCAT CGTGGAGCGC GCGGAGAACC TGGGTCTCTC CCAGCTGCAT
CAGTTGCGCG GACGTGTGGG TCGCTCCCGC GAACGCGGCT ATGCGTACTT CCTCTACCCG
TCGGAGAAGC CACTCACCGA GACCGCCTAC GATCGCCTGT CGACCATCGC GCAGAACAAC
GAGCTCGGCG CCGGCATGGC CGTTGCGATG AAGGATCTGG AGATCCGCGG CGCCGGAAAC
GTGCTGGGCG CAGAGCAGTC CGGACACGTC GCGGGTGTCG GCTTCGATCT CTACGTGCGC
CTCGTGGGCG AAGCGGTCGA AGCTTTCCGT GCAGCCGCCG ACGGAACGCC GATCACCCTC
CCGGAAGAGC AGAAGGAGGT GCGCATCGAC CTGCCGGTGG ATGCGCACAT CCCACCCGAC
TACGTCACCA GCGATCGACT CCGCCTGGAG GCCTACCGCA AGCTGGCAGC GGCGCACGAT
GATTCGGCTG TCGCCGAAGT ACTCACCGAG CTCACCGACC GATACGGGCC GCCCCCGGTC
GAGGTGGAAC GGCTGGCCGC GATCGCCCGA CTGCGATCGC TGGCCCGGGC CGCCGGCGTC
ACCGAGGTCA GCGTGAGCGG CACCACCGTT CGCGTCTCTC CGATGGAACT GCGGGACTCA
CAACAGCTCC GGCTCAAACG GCTCTATCCG GGCGGCTCGT ACCGGGCCAC CACACGCACC
GTCACCTTCC CGATCCCCCG CGTCGAAGGC GGCGGCGTCG GCAGCGAGCG AGTACGCGAT
ATCGCACTGC TCCAGGTGGT CGCGGACTTC CTGGCGGCGA TGGACGGCAA GGGCGCGGGT
TACTGGCGCC TCGATCAGCC ACCGCGCGCC GCGGCACCGG CGGAGGCCGG TGCATGA
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| Protein sequence | MSDAASAPTP ALSGLTRAVA ADPDVVAFAG AAGRPDLTVT AVDGARPFLL SALAGQAPVL
VVTATGREAD DLTSELRETL GADAVTQFPS WETLPHERLS PGADTVGRRL QVLRRLAWPD
DAQYGAPLRA VVATVRSLVQ PMAPGLGDAP SVTLREGEEF DFEELIETLV ELAYTRVDMV
GKRGEFAVRG GILDIFPTTT DLPVRVEFWG DEITDLRAFS VADQRSQPEV QVGTVHVYPC
RELLLTADVR DRAATLKAEH ESDAALAEML EKLAQGIPVE GMEALIPALV PGELQLLTDV
LPDGTHTVLL DPEKIRTRAA DLARTGQEFL EASWTAAALG SSAPLDPSGI DLGASAYRGL
DDVHASVSAQ GHPWWTISPL AAGPDTDDDH LTVHAEHAPA PRGSEAEAEK LFATLRAHAA
SGGSGVIVVA GRGTRARILE RLRDAEVPAS ELEAGEGPRP GTVGVLRGSL QTGLTVPSQQ
LVLLAEPDLT GNRVAGVGDG RRLPAKRRNQ VDPLALTAGD LVVHDEHGIG KFVEMIERTV
AGARREYLVI EYAPSKRGQP GDKLFVPMES LDQLSRYVGG EMPALSKMGG SDWQNTKRKA
RKAVREIAGE LVQLYAARNA APGHAFAPDS PWQREMEDAF PFTETVDQMT VIGDVKSDME
KAVPMDRVVI GDVGYGKTEI AVRAAFKAVQ DGKQVAVLVP TTLLAQQHLK TFVDRMQGFP
VTVKGLSRFT DRHETEQVLE GLADGSVDIV VGTHRLLQTG VRWKDLGLVV VDEEQRFGVE
HKEHIKALRT NVDVLTMSAT PIPRTLEMSM AGIREMSTIL TPPEERHPVL TYVGPYDNKQ
VAAAIRRELL RDGQVFYVHN RVSSIDKAAK QIRDMVPEAR VVVAHGQMGE EALESTVQGF
WNREFDVLVC TTIVETGLDI SNANTLIVER AENLGLSQLH QLRGRVGRSR ERGYAYFLYP
SEKPLTETAY DRLSTIAQNN ELGAGMAVAM KDLEIRGAGN VLGAEQSGHV AGVGFDLYVR
LVGEAVEAFR AAADGTPITL PEEQKEVRID LPVDAHIPPD YVTSDRLRLE AYRKLAAAHD
DSAVAEVLTE LTDRYGPPPV EVERLAAIAR LRSLARAAGV TEVSVSGTTV RVSPMELRDS
QQLRLKRLYP GGSYRATTRT VTFPIPRVEG GGVGSERVRD IALLQVVADF LAAMDGKGAG
YWRLDQPPRA AAPAEAGA
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