Gene Tpau_3087 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpau_3087 
Symbol 
ID9157258 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTsukamurella paurometabola DSM 20162 
KingdomBacteria 
Replicon accessionNC_014158 
Strand- 
Start bp3200623 
End bp3201315 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content68% 
IMG OID 
ProductThiJ/PfpI domain protein 
Protein accessionYP_003648018 
Protein GI296140775 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.00619766 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCAACA TCCTGGTCGT CACCACCAGT GTGCCGTCGT ACCGCGTGAG CGGGCGCCGC 
ACCGGCCTCT GGCTCGGCGA GTTGACGCAC TTCGTTGACG CCGTCGAGGC TGCGGGTCAC 
ACCACCACCA TCGCCAGCAT CGACGGCGGC TTCGTTCCGA TCGATCCCGA ATCGCTCGGC 
CACGAGGTGC TCGCGCAGGG CGGTACCCGC GCCCGGTACG ACGATCCCGC ATTCATGGCG 
CGCATTGCGA ATACTCCTTC GCTCAACGAC ATCGACGCCT CCGACTTCGA CGCGATCTAC 
CTCACCGGCG GCCACGGCGT CATGTTCGAC TTCCCCGACG ACGCGCGCCT GGCCACCCTG 
CTCCGCGAGT TCGACGAGGC GGGAAAGGTC GTGTCCGCCG TCTGCCACGG CACCGCCGGT 
CTGCTCGGCG CCACCAAGGC CGACGGTGCG CCGCTCATCG CAGGCCGCCG CATCTCCGGC 
TTCTCCTGGA ACGAAGAGGT CCTGGCCGGG CTCGACGCCA TCGTCCCGTT CAATCTGGAG 
GAGCGGATCG CCGAGCGCGG TGCGACCTAC ATCGAGGCCG ACGAGGCCTG GGCTCCGTTC 
GCCGTGACCG ACGGGAACGT CGTGACCGGG CAGAATCCCG CGAGTGCTCA CCCGGTTGCG 
CAGGGCGTCC TGACGCTGCT CGACAAGAAG TAG
 
Protein sequence
MSNILVVTTS VPSYRVSGRR TGLWLGELTH FVDAVEAAGH TTTIASIDGG FVPIDPESLG 
HEVLAQGGTR ARYDDPAFMA RIANTPSLND IDASDFDAIY LTGGHGVMFD FPDDARLATL 
LREFDEAGKV VSAVCHGTAG LLGATKADGA PLIAGRRISG FSWNEEVLAG LDAIVPFNLE 
ERIAERGATY IEADEAWAPF AVTDGNVVTG QNPASAHPVA QGVLTLLDKK