Gene Tpau_1107 details

Gene Information

• Locus tag: Tpau_1107
• ID: 9155247
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Tsukamurella paurometabola DSM 20162
• Kingdom: Bacteria
• Replicon accession: NC_014158
• Strand: +
• Start bp: 1134708
• End bp: 1135388
• Gene Length: 681 bp
• Protein Length: 226 aa
• Translation table: 11
• GC content: 66%
• Product: RNA polymerase, sigma-24 subunit, ECF subfamily
• Protein accession: YP_003646078
• Protein GI: 296138835

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.581311
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGGACG GCGACATCAC GGATGTGACC GAGCTGGACC AGGCGAGCGG CGAACCCGAC 
ACCGAGGTCG AGTCGGAAGA GCAGCTCACG GCCCGGTTCG AAGCCGAGGC GCTGCCCCTG 
TTGGACCAGT TGTACGGAGC GGCGCTGCGA ATGACGCGCA ATCCCGCCGA CGCCGAGGAT 
CTGGTGCAGG AGACCTATGT GAAGGCCTAC AGCGCCTTCC GCAGCTTCCG CAAGGGCACC 
AATCTCAAGG CGTGGCTGTA CCGGATCCTC ACCAATACCT ACATCAACGG TTACCGCAAG 
AAGCAGCGGC AGCCCGCGCA GTACCCCACG GACGAGATCA CCGATTGGCA GCTCGCGGCC 
ACGGCGGAGC ACAGCTCCAC CGGACTGCGC TCGGCGGAGA TCGAGGCACT GGACGCGCTG 
CCCGACGACG AGATCAAACA AGCGCTGGCG AAGCTCCCCG AGGACTTCCG CATGGCGGTG 
TACTACGCCG ACGTGGAGGG ATTCCCGTAC AAGGAGATCG CGGAGATCAT GGGAACGCCC 
ATCGGCACCG TGATGTCGCG GCTGCACCGC GGCCGACGGC AGCTCCGCAC CGAATTGGAA 
GGGGTCGCGC GCGAGCGCGG CTTCCTGCGG GCCGGTGCCG CCGATACGGA TGGCGGCACC 
GATCAGGAGG GTGAGAAGTG A 

 

Protein sequence

MTDGDITDVT ELDQASGEPD TEVESEEQLT ARFEAEALPL LDQLYGAALR MTRNPADAED 
LVQETYVKAY SAFRSFRKGT NLKAWLYRIL TNTYINGYRK KQRQPAQYPT DEITDWQLAA 
TAEHSSTGLR SAEIEALDAL PDDEIKQALA KLPEDFRMAV YYADVEGFPY KEIAEIMGTP 
IGTVMSRLHR GRRQLRTELE GVARERGFLR AGAADTDGGT DQEGEK