| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_4141 |
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| Symbol | |
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| ID | 9140861 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Planctomyces limnophilus DSM 3776 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_014148 |
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| Strand | + |
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| Start bp | 5311030 |
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| End bp | 5312694 |
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| Gene Length | 1665 bp |
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| Protein Length | 554 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | |
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| Product | pseudouridine synthase |
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| Protein accession | YP_003632151 |
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| Protein GI | 296124373 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.244372 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACGTT CTCGACCTCC CCGCCGCACA ACATCTCTGG TCACTTCTTC ACGAAATCAG
GGTTCCAAAT CAGCCCATCC GGATCAACCG GGCGAGGCCT CTGCGGGCGA ACGTCTGCAG
AAGGTTCTGG CAAGTGCCGG GTATGGATCA CGCCGAGCCT GTGAAGAATA CATCGAAATG
GGCCGCGTGA CGATTGATGG TGTGGTGGCG AAGGAATTGG GGGTGCGTGT TGATCTTTCC
CGCCAGAAGG TCGCTGTCGA TGGCGAAAAG CTGCGTGTGG AAGAAAAGCG TTACTTTCTC
TTTCATAAGC CAGCAGGTGT GCTGTGCACA AATTCTGATC CTGCGGGTCG AACTCGTGTG
ATCGATTGCT TCCCGCCGAA TGTCGGTCGG CTCTTTACGG TGGGCCGGTT GGACGATGGG
ACTGAAGGTT TGCTGATCGT GACCAACGAT GGCGATCTTG CCGAGAGACT TACACATCCC
AAGTTTGGTA TTCCGCGGAT TTATCGTGCT GTCGTGGCGG GTAATCCTTC GACGGAGGCA
ATCAATCAGC TTCTTGAAGG GCTGTACTTC GCGGAAGGCC GCTTCCGCAT GTCGAGCGTT
AATCGAGTGA AGTCGCAGGG GTCTGCGACT GTGCTCGAAA TTACCATGCG GGAAGGACAG
AACCGGGAAA TCCGCCGGTT GCTGGCTCGC GTGGGGCATA AAGTGATGAA GCTCAAGCGG
ACTCATTTTG GCCCGATCAA ACTGGGTGAT CTCGAACGCG GAGCTCATCG CAAACTCTCG
GAAGAAGAAC TCAGCAAACT GCAGGATGTT ATCACGGGCA AGTGGAAGGA ACCGGCTCCC
CGCAAGCCGC AGCGTACCCG CGATGCTGGT AAAGCGACTT CAGCGGGAGG GGTAACCAGA
GCCTCGTCGT CTCGTGCAGG AAGTGCAGGT GCCACGCCTC GCGCCAGGCT GGAGCGCACG
GCATTACCAG CGACGGGACT GGAACCACTG ACCATTCCGG GCTCGAAACT CAAACGCCTG
GGAAGCTCAA AAGCGTTGAA ATCACAGGTA TTGAACTCAC CTGAGGCTAA CCCCAAGCGT
CGCGAAGATT CCCGCTCGTC CGGTGGATCT CGTTCTTCAG AAGGATCACC AGCGCGTCGT
ACCGGGAAAG GCTCAATGGC TCCGGAAGCT CGGCAGAAGC CCGCCTCGCG CACTTCGGGA
GGCTTTTCCA AGGGCCGTCC GGGCAGCAGG ACGACGGATC GCAATCTGGC CCTTAACGAC
AATCCGCCAG TGATGGACGA TGGCAGCACG CGATTGAAGC GGCGTGTGCT GGATGGTGAA
GGTTCGGTGA TTTCGAGCAA AAAGCTCAGA GGGGCAGCAC CGCGCCTGAA CTTCCCGCAG
AATGTACGGG GCAACGACGC TGCCGATGGA GACGAAGCTC TCAATTCACC ACCACTGAGC
CTGCTGAAGA GTGGCCGACG AGTCCCGCGG ACGAAGGATC ACGTCATCGC ACATCGATCG
GCCAATAAAG AGACCGCTGC TGAAGCGACT CCCGAAAAAG TTGTTCGCAA GAAGACCTCT
GCCAAGTTTC CAGGATCTCG AAAAGCGACA ACGGCGGGGC GCTCATCAAC CAGCGCTCGA
AACAAGAAGT CGTCGAGTTC ATCGAGTCGC AAGCGGAGTG ATTAG
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| Protein sequence | MKRSRPPRRT TSLVTSSRNQ GSKSAHPDQP GEASAGERLQ KVLASAGYGS RRACEEYIEM
GRVTIDGVVA KELGVRVDLS RQKVAVDGEK LRVEEKRYFL FHKPAGVLCT NSDPAGRTRV
IDCFPPNVGR LFTVGRLDDG TEGLLIVTND GDLAERLTHP KFGIPRIYRA VVAGNPSTEA
INQLLEGLYF AEGRFRMSSV NRVKSQGSAT VLEITMREGQ NREIRRLLAR VGHKVMKLKR
THFGPIKLGD LERGAHRKLS EEELSKLQDV ITGKWKEPAP RKPQRTRDAG KATSAGGVTR
ASSSRAGSAG ATPRARLERT ALPATGLEPL TIPGSKLKRL GSSKALKSQV LNSPEANPKR
REDSRSSGGS RSSEGSPARR TGKGSMAPEA RQKPASRTSG GFSKGRPGSR TTDRNLALND
NPPVMDDGST RLKRRVLDGE GSVISSKKLR GAAPRLNFPQ NVRGNDAADG DEALNSPPLS
LLKSGRRVPR TKDHVIAHRS ANKETAAEAT PEKVVRKKTS AKFPGSRKAT TAGRSSTSAR
NKKSSSSSSR KRSD
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