| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_4099 |
|---|
| Symbol | |
|---|
| ID | 9140819 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | + |
|---|
| Start bp | 5256441 |
|---|
| End bp | 5258186 |
|---|
| Gene Length | 1746 bp |
|---|
| Protein Length | 581 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | NHL repeat containing protein |
|---|
| Protein accession | YP_003632109 |
|---|
| Protein GI | 296124331 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.649178 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGACTT GTTCTAACCG AGCCTGGTTT CGACATTTTG AGAGTTGGCC GCAAAGATGC
GGAGTCTGGC GATGGGATGG GAATGCTCTG GTAGGGTGCC TGGCTGCGAT CTTACTGTGT
CTATTTTTCG TGCCTGCGGT TGCTCAGGAA ACGTCTGACG GGCAATCACC GGCAGCGAGT
ACGCCTAAGC CAGCACCAGA AGCCGGCAAG CCAGAAAATC CGTTTCCGAA TCGCATTCCT
GCCCCTTCGC TCGATGGGGG AATCGAGTGG CTCAACACCA GCCAGCCCCT GTCACTGAAG
GATCTGCGCG GGAAAGTGGT GGTGCTCGAC TTCTGGACGT ACTGCTGCAT CAACTGCATT
CATGTGCTGC CTGATCTGAA GTATCTCGAA AAGAAGTATG GCAAAGAGCT GGTGGTCATC
GGTGTTCACT CCGCCAAGTT TGATAACGAG AAAGAGTCCG GGAACATTCG CAAAGCCATC
TTGCGTTACG AGATTGAGCA TCCCGTCGTC AACGATGCGG AGATGACCAT CTGGCGGAAG
TTCAGTATTC GGTCGTGGCC TTCTCTCGTG TTGATTGATC CTGAGGGGCA GTTTTGTGGT
GTCGCTTCCG GCGAGGGAAA TCGCGAACTG CTGGATCAAG TGATTGCCAA AGTCATCGAT
TATCATAGGG CGAAGGGGAC GCTGAACGAA AAGCCGATGG CTTTCGATCT CGAAAGCGGC
AAAGAAGCAG CCACTCCTTT GCGATTCCCT GGCAAGCTGC TCGTTGATCC GGCCCATGAG
AGAGTCTTTA TTTCAGACAG CAATCATAAT CGCATCGTCG TGGCATCGCT GGCCGGTCAA
CTCCTCAAGG TGATTGGAAG TGGAAAAATT GGCGCCAAAG ATGGCCCGGC TGAATCGGCA
CAGTTTGACC ATCCGCAAGG AATGGCACTG GACGGGAATA CGCTCTATGT GGCCGATACG
GAAAATCATC TGCTGCGGAC GGTGAACCTG ACCACATGGG AAGTTTCGAC ACTCGCAGGG
ACTGGTGAAC AGGCCCGCGG CCGCGATCGT GGGGGGGAGT TGCGAACCAC AGCGCTGAAC
AGCCCGTGGG ATCTTTACAT CCAACAGGGC GTGCTGTACG TCGCGATGGC TGGGCCGCAT
CAGCTCTGGT CGCATGCACT GGGAAGTAAG ACGATTCAGA ACTATGCGGG CTCTGGACGG
GAAGATATTA CCAATGGAAG CCTGGCTCAA TCGGCACTGG CGCAACCTTC GGGAATCACC
AGTGATGGCG AGTCGCTGTA TGTGGTCGAT AGCGAAGGTT CATCCATTCG CAAAATCACT
ACTAGCGAAG CAGACAAACT GGAAGACCCG GAGGGCAAAG TCACCACAGT GGTGGGAGCT
TCGGATCTGC CGCGAGGTGC GAGCCTGTTT GAGTTTGGCG ATATTGATGG CAAGGGATCA
GCAGTTCGTC TGCAGCATCC GCTGGGGATT GTCTTTCACG AGGGGAAGCT GTTTGTCGCC
GACAGTTACA ACCATAAGAT TAAAGTGATC GATCCGATCA AAAGAACATG CGAGAGCTGG
CTGGGGAATG GAAAGCCGGG GGCTGCACTT GCTCCGGTCC AGCTATCGGA ACCTGCGGGG
TTGGCAACTT ATGGCGGAGT TCTGTTCATT GCCGACACGA ATAACCATCG CGTCCTGAAG
GTCGATTTGA AAACGAAAGC TGCCACCGAG TTGAAGATCG AAGGCCTGAC AGCCCCCAAG
CCTTGA
|
|---|
| Protein sequence | MMTCSNRAWF RHFESWPQRC GVWRWDGNAL VGCLAAILLC LFFVPAVAQE TSDGQSPAAS
TPKPAPEAGK PENPFPNRIP APSLDGGIEW LNTSQPLSLK DLRGKVVVLD FWTYCCINCI
HVLPDLKYLE KKYGKELVVI GVHSAKFDNE KESGNIRKAI LRYEIEHPVV NDAEMTIWRK
FSIRSWPSLV LIDPEGQFCG VASGEGNREL LDQVIAKVID YHRAKGTLNE KPMAFDLESG
KEAATPLRFP GKLLVDPAHE RVFISDSNHN RIVVASLAGQ LLKVIGSGKI GAKDGPAESA
QFDHPQGMAL DGNTLYVADT ENHLLRTVNL TTWEVSTLAG TGEQARGRDR GGELRTTALN
SPWDLYIQQG VLYVAMAGPH QLWSHALGSK TIQNYAGSGR EDITNGSLAQ SALAQPSGIT
SDGESLYVVD SEGSSIRKIT TSEADKLEDP EGKVTTVVGA SDLPRGASLF EFGDIDGKGS
AVRLQHPLGI VFHEGKLFVA DSYNHKIKVI DPIKRTCESW LGNGKPGAAL APVQLSEPAG
LATYGGVLFI ADTNNHRVLK VDLKTKAATE LKIEGLTAPK P
|
|---|
| |