| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_3942 |
|---|
| Symbol | |
|---|
| ID | 9140661 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | - |
|---|
| Start bp | 5064992 |
|---|
| End bp | 5066359 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen |
|---|
| Protein accession | YP_003631952 |
|---|
| Protein GI | 296124174 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTCAGA TCAATGAACA TTGGTTTTCC CGGATTTCGT GGGCGAGTGT GGGCAAAAAG
TGGGCGGCAC TGGCTGTCGT GGCCATGACG AGCAGTGTCT GCCTGGCTCA GGAAAAACCA
GCGACAGTAC CTGCGGCACA AATCACCACG GGGAACTCGG AAGCGAAGCC GACAGACGAC
AAGCAGGCGT CCGATGAAGC CAAGGCCAAA GCTGCCAAAA TTCGTGCTGC CGCCATGCAG
GGGCTGCTTC CGGAAGATCT CGATCTGAAG CTCCCCGAAG ATATCTTCCA ACTTCCCGAA
AGTGGCATTC CTGAATTGCT GGCCTCGGCC CGACGACTCT CCTCGCCGAT GGCTCTTTCG
AAGCAGAAGG TCAGCTCTTT CGAAGAGATG AATGCCCTCA GACTCAAAGC CAATAACCTC
GTCACCACAG CCACTGAAAA AGTTCTGGCT GATCCAGCCG CCAATGAAAA GCAGGCTTTG
CAGGCTGCCG GTCTACTCCT CAATGCGCAG TCGATGCTCT TGAGAGTCGA AGCACCTGGA
TCGGCACAGT CGGCACTTGC GATTGCCAAT CGCCTGGCAA CAGATTCCCG CCCAGCCATT
GCCAAGATGG CCTCAGAGAA AATCGATGGC TTGCGGATTC TGACGATTCC TCAACTGGAA
CCGGCAGCGG TGGATACGCT GCTCGCTGAG ACACTCAACC GTGTCAAAGT GGCTGATTTC
TCGACAGAGA GCATCAAACT CGCCTCAGAG GCAGGTCGCA CACTCGAATA TGGCAAAGAC
CCTGCTCTCG CTGCCAGCTA TATGTCTCGC CTGGCCGACC TGCTGGAATC GACTGATAAG
GAAACTGTCA CGCCGATTGC GGAAAGAGTT CGCGGCATTT CGCGGCGTCT GGGACTGGTT
GGTAACTCCA TGGAAGTTGT CGGCACCACT GTAGAAGGCA AGGATTTCGA CCTCGCTTCC
CTCAAAGGCA AAGTGGTTCT CGTGGACTTC TGGGCTACCT GGTGCGGCCC CTGCATTGCC
GAGATTCCAC GCGTCAAGAA GCTCCATGAG GCTTATCACG ACAAAGGCTT TGAAGTCGTC
GGGATCAGCC TGGATAACAG TATTGAGCCC CTAAAGGAAT TCATCGAAAA GCGGGAAATT
CCCTGGGTCA ACCTGTACCC GGCGAACACC TCGGAAACCA AGGCTGCAGG CTGGAGCAAC
CCGATTGCCA AGTTCTATGG TGTGAATGCA ATTCCGACCT GCATTCTGAT TGGTGCCGAT
GGAAAAGTGA TTACCGTCAA GGCCCGCGGG CAGGTTCTCG AAGATGCACT GGCCAAGATT
TATGGTCCGC TCCCAGAAGT TGAAGAAAAG GCTGGCGGCC AGAAGTAA
|
|---|
| Protein sequence | MRQINEHWFS RISWASVGKK WAALAVVAMT SSVCLAQEKP ATVPAAQITT GNSEAKPTDD
KQASDEAKAK AAKIRAAAMQ GLLPEDLDLK LPEDIFQLPE SGIPELLASA RRLSSPMALS
KQKVSSFEEM NALRLKANNL VTTATEKVLA DPAANEKQAL QAAGLLLNAQ SMLLRVEAPG
SAQSALAIAN RLATDSRPAI AKMASEKIDG LRILTIPQLE PAAVDTLLAE TLNRVKVADF
STESIKLASE AGRTLEYGKD PALAASYMSR LADLLESTDK ETVTPIAERV RGISRRLGLV
GNSMEVVGTT VEGKDFDLAS LKGKVVLVDF WATWCGPCIA EIPRVKKLHE AYHDKGFEVV
GISLDNSIEP LKEFIEKREI PWVNLYPANT SETKAAGWSN PIAKFYGVNA IPTCILIGAD
GKVITVKARG QVLEDALAKI YGPLPEVEEK AGGQK
|
|---|
| |