| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_3361 |
|---|
| Symbol | |
|---|
| ID | 9140077 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | - |
|---|
| Start bp | 4349824 |
|---|
| End bp | 4351032 |
|---|
| Gene Length | 1209 bp |
|---|
| Protein Length | 402 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | hopanoid biosynthesis associated radical SAM protein HpnH |
|---|
| Protein accession | YP_003631373 |
|---|
| Protein GI | 296123595 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.941975 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGTTC CTGTCCGTCA AATGTGGACG ATCGCCAGCT ATGTGCTCAA ACAGCGAATG
CTGGGCAACA AGCGATATCC GCTGGTTCTG ATGCTCGAAC CTCTTTTTCG CTGCAATCTG
GCCTGCGCTG GATGTGGCAA GATCCAGCAT CCCGTCGAGA TTTTGCGCAA GCACCTTTCT
CCCGAAGAAT GCTTCGCTGC CGCCGATGAA TGCGGTGCGC CGGTCATTTC CATTCCCGGT
GGAGAGCCAC TCCTGCACCC GCAAATCGGC GAAATCGTTG CCGGGCTGGT GGCTCGCAAA
AAGTTTGTTT ACCTGTGCAC GAATGCCATC CTGCTCGAAA AACATCTTCA CAAATTCCAG
CCCAGCCCGT ACCTGACCTT CTCGATTCAT CTCGACGGCC CGCAAGAAGA GCACGACTTT
GCCGTATGCC GTGAAGGGGT GTACGACGTC GCCATCAGTG CGATCAAAAC AGCCATCGCG
CAGGGCTATC GGGTGACGAC GAATACGACG GTCTATAACA ACGCTCAGCC CGAAGCCCTG
CGGGAAATGT TTGATACTCT GGCTGATCTG GGTGTCGAAG GGATGATGCT TTCCCCGGGG
TACCAGTACG AGAAAGCCCC GATTCAAACG TTGTTCCTGC AGCGACAGCA GACGGTTTCA
CTCTTCCGGA AGCTCTTTTC GAATGCCAAA AAGCGGTGGA AATTCAACCT TTCACCACTC
TTTATCGAGT TTCTGCAAGG TGCCTGGAAT CTGGAATGCA CACCGTGGGG GAGCCCCACC
TACAACCTCT TTGGCTGGCA GAAGCCCTGC TATCTGATGA ATGAAGGCTA CACCAGAACC
TTTAAAGAGC TGATGGAAAC TACTCACTGG CCAGATTATG GCCGCGCCAG TGGCAACCCC
AAATGTGCCA ACTGTATGGT TCACTGTGGC TACGAACCGA CAGCCGTCGC ACAGACATTC
GGTAGCTGGA ACGGCTTGTA TCACACAGCC ATCCGCACCT TTTTCGGCCC CCGGCAAAAG
AATCTGCCGC CACTCGACGA ACCCCCTTCG AGTGCTGATT CAGGGTCTGG AACTCGCCAA
CCTCTGGGAG AGTTCGTTGC CTTATCGCCA CTGGGCAATG CGTCATCTTC GGGATCTTCA
TCGAGATCCA GCGAACTTGC GGGCGTGGCC TCGTGCCAGT TGAATAGCTC GCCAGCAGCG
GCCTCTTAA
|
|---|
| Protein sequence | MSVPVRQMWT IASYVLKQRM LGNKRYPLVL MLEPLFRCNL ACAGCGKIQH PVEILRKHLS
PEECFAAADE CGAPVISIPG GEPLLHPQIG EIVAGLVARK KFVYLCTNAI LLEKHLHKFQ
PSPYLTFSIH LDGPQEEHDF AVCREGVYDV AISAIKTAIA QGYRVTTNTT VYNNAQPEAL
REMFDTLADL GVEGMMLSPG YQYEKAPIQT LFLQRQQTVS LFRKLFSNAK KRWKFNLSPL
FIEFLQGAWN LECTPWGSPT YNLFGWQKPC YLMNEGYTRT FKELMETTHW PDYGRASGNP
KCANCMVHCG YEPTAVAQTF GSWNGLYHTA IRTFFGPRQK NLPPLDEPPS SADSGSGTRQ
PLGEFVALSP LGNASSSGSS SRSSELAGVA SCQLNSSPAA AS
|
|---|
| |