Gene Plim_2294 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlim_2294 
Symbol 
ID9138999 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePlanctomyces limnophilus DSM 3776 
KingdomBacteria 
Replicon accessionNC_014148 
Strand
Start bp2961258 
End bp2964566 
Gene Length3309 bp 
Protein Length1102 aa 
Translation table11 
GC content53% 
IMG OID 
Producttransporter, hydrophobe/amphiphile efflux-1 (HAE1) family 
Protein accessionYP_003630319 
Protein GI296122541 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGCAGTTTT GCCGCTACTT TATTGACCGC CCGATTTTTG CAGCCGTCCT GTCAATTCTT 
GTGACATTGG CGGGGGCGAT CGCATTGTTC CGCCTGCCCA TTGCTCAATT CCCGGCAGTC
GCACCACCCA CTGTCCAGGT CGATTGCAAT TATCCCGGTG CCAGTTCGCT GGTTGTGGCA
CAGACCATTG CTGCTCCTAT TGAGCAGCAG GTGAATGGTG TCGAAGAAAT GCTCTACATG
TCGTCGCAGA GCACGAGCGA CGGCTCCTAT ACGCTCACAG TGACTTTCAA GCCCGGTGTT
GATCTGAACC TGGCACAGGT GCTGGTGCAA AACCGGGTTT CATTGGCGAG GCCACAGCTT
CCCGATGTCG TACGCGCCAC AGGTGTCACC ACGAAGAAAC GCGCCCCGGA TATTCTCCTG
ACGATCAGCA TCAACTCGCC AGATAACCGC TACGATCAGC TCTACATCAG CAATTATGCG
CTGCTCCACT TGCGAGACGA AATCGCGCGA ATTCCAGGGA TCAGCGAAGT TCTCCTGTTT
GGCCAGCGCG ATTACAGCAT GCGTGTCTGG ATCGACCCCG AACAGCTTTC CACCCGCAAC
CTCACTGCCA ATGACGTCGT TAACGCCATC CGTGAACAGA ATTTCCAGGT CGCAGCCGGT
TCTATCGGGC AACCTCCTCA TTCCGGCTCA TCGACTCGGC AGATTCCCCT GGCAGTGGTG
GGACGATTAA CCAATGAGAC TGCCTTCGAA GACATTGTCG TCCGAGCCGA CCATGATCAA
CTGATTCGCA TTCGCGATAT TGGACGCGTC GAATTAGGTG CCCGCAGTCA GGACATCAAC
AACCGTTTTG ATGGGAAACC GACAGTTGGC CTCGCGATTT TTCAACTTTC AGACGCAAAT
GCCCTGACAA CAGCCGATTT GATTAAGGCG AAAATCGAAG AGCTTTCGAA GGATTTTCCC
GAAGGTCTGG CTTACGAAAT CGGCTATGAC ACGACGCCAT TCATCCGCGA ATCAATCGAT
GAAGTTTTCA AAGCTTTACG AGATGCCACC ATCCTCGTCG CCTTAGTGGT CCTGGTCTTC
CTGCAGGGCT GGCGCCCAGC CATTATCCCG CTCATCGCAG TCCCCGTGGC GATTGTCGGA
ACATTTGCGG CTATGGCAGT GGTGGGCTTC AGTATCAATA ACCTCACCTT GTTCGGACTT
GTGCTGGCCA TTGGCATTGT TGTGGACGAT GCGATCGTCG TCGTCGAAGC GGTACAGCAT
CATATCTCGC AAGGACTGAA TCCTCGGGAA GCGGCGGTCC GTGCCATGGA CGAAGTCGCT
GGGCCTGTGG TGGCTGTGGG ACTGGTTCTC AGCTCAGTGT TTATCCCATG TGCGTTTATT
ACTGGAATTG TGGGGGAGTT CTTCCGGCAA TTTGCTCTGA CAATTGCGAT CTCAACCATC
CTTTCGATGC TCAATTCGCT GACACTCAGC CCGGCCCTGG CGGCCATTCT GCTGCAAGGC
AAAGACGACC GACCAGACAT TCTCACCCGC ATCATTAACT TCTTGTTCGG CTGGTTCTTT
GCAGCTTTCG ACTGGTCATT TCGAACATCC ACTTCGCTCT ACACTCGCTT CGTCGGGCAA
CTGCTGCGAA TTCCAGTCCT CGTACTCATC GTTTATGGCG GATTGCTCTT CCTCACAGGC
TGGGGATTCA ACCAGCTACC CAAAGGATTT ATTCCCTCGC AGGACATGGG CTACCTGATT
GCCAGCATTC AGCTTCCCGA TTCGGCAGCA GCCGGTCGGA CGCGAGATAC CGTGGCACGA
ATTGAAGAAA TCACACTCAA GACACCAGGC GTCAAGAACG TCAATTCGAT TGCCGGGAAC
TCCTTTATTT TGAGTTCTTA TGGTTCAAAT TTTGGCTCGA TGTTCATCAT TCTCGATTCG
TTTCATCACC GGAAAGGTCA CGCCGGACAA TCTGCGGAAG AGATTGCCGC ATCACTGAGA
AAAAGTTTTG CCAAAGATGT CCCCGAAGCC CTCGTGAGTG TCTTTCCTCC ACCAGCCGTC
CGTGGATTGG GGAGAGCTGG CGGTTTTCGA CTGATGGTTG AAGATCGCGA AGATCTGGGG
CTTAAAGAGC TGCAGAAAGG GACCGACGAA CTGATTGCGA AGATGAATGC CACCGGGAAA
GTTCAAGGAG CATTTACCGT CTTCAAAACG AACTCGCCAC AGATCTTTGC CGATATCGAC
CGTCAGGCGT GTCTTCAACT GAATGTCCCC TTACAGGAAG CCTTTGCCGC CCTACAGGCC
ACGATGGGTT CGCGATACGT CAACGACTTC AATCGATTTG GGCGTACCTG GCAGGTGGTG
GTTCAGGCCG ATACGGATTT CCGAAATGAC CTGGCAGATT TGAAACGTAT CAAAGTTCGT
AATAGTCACG GAGAGATGGT TCCACTGGCG TCTGTCTGCA CGCTGAAGGA AGTCAGCAAT
CCTCTCGTGA TCTCGCGCTA TAACATGTAT CCGGCTGCGA CTGTCAACGG GAACGTCGCC
CCGGGATTCA GCACAGGCGA GACGCTCGAC ATGGTCGAAC AACTGGCCGC GAGTGAACTT
CCAATCGGCC TCGCGACGGA GTGGTCGGAA CTTTCTTACA TGGAGCGGCA AGCAGGTAAC
ACCGGGATGT TCGTCTTCTA CATGGCAATT GCCTTCGTGT TTCTGGTACT GGCAGCTCTT
TACGAAAGCT GGGCCTTGCC GCTGGCAGTC ATTCTGGTCG TCCCGATGTG CATTTTGAGT
TCGATCACAG GTGTGGCGTA TGCCGCCATG GATATCAATG TTTTCACTCA GATTGGATTT
GTCGTGCTGA TTGGTCTGGC CTGCAAAAAC GCGATTCTGA TTGTCGAATT TGCACGTTCT
CGACGTCATG AAGGAGCCAC GATTCGCGAG GCCACGCTCG AAGCCTGCCA CTTGAGGTTA
CGGCCCATCC TGATGACATC GTGCGCCTTT ATTCTGGGAG TGATCCCATT AATTCTGGCC
ACTGGTGCAG GTGCCGAGAT GCGGAGAACC TTGGGCGTGG CGGTTTTCAG TGGCATGCTC
GGAGTGACCT GCTTTGGCAT TCTGTTGACC CCAGTTTTCT TCTACGTAAT TGAACATCTG
AGTGAAGCGG AGTTCTTCCG ATCATCAAAG ATCCGCGAGC CAGCCCAGTG GGTACTCGAT
CTGATTCGTC TCAAACCACT CTGGCGAGGG GCCCAATGGT CAGGCCGGCA CCTGATTTCG
ATATCAGACA AGATTGAAGA AAGATTTCGT CCTCATGACC CTGGAAGTTC ATCATCAGGT
CATTCATAG
 
Protein sequence
MQFCRYFIDR PIFAAVLSIL VTLAGAIALF RLPIAQFPAV APPTVQVDCN YPGASSLVVA 
QTIAAPIEQQ VNGVEEMLYM SSQSTSDGSY TLTVTFKPGV DLNLAQVLVQ NRVSLARPQL
PDVVRATGVT TKKRAPDILL TISINSPDNR YDQLYISNYA LLHLRDEIAR IPGISEVLLF
GQRDYSMRVW IDPEQLSTRN LTANDVVNAI REQNFQVAAG SIGQPPHSGS STRQIPLAVV
GRLTNETAFE DIVVRADHDQ LIRIRDIGRV ELGARSQDIN NRFDGKPTVG LAIFQLSDAN
ALTTADLIKA KIEELSKDFP EGLAYEIGYD TTPFIRESID EVFKALRDAT ILVALVVLVF
LQGWRPAIIP LIAVPVAIVG TFAAMAVVGF SINNLTLFGL VLAIGIVVDD AIVVVEAVQH
HISQGLNPRE AAVRAMDEVA GPVVAVGLVL SSVFIPCAFI TGIVGEFFRQ FALTIAISTI
LSMLNSLTLS PALAAILLQG KDDRPDILTR IINFLFGWFF AAFDWSFRTS TSLYTRFVGQ
LLRIPVLVLI VYGGLLFLTG WGFNQLPKGF IPSQDMGYLI ASIQLPDSAA AGRTRDTVAR
IEEITLKTPG VKNVNSIAGN SFILSSYGSN FGSMFIILDS FHHRKGHAGQ SAEEIAASLR
KSFAKDVPEA LVSVFPPPAV RGLGRAGGFR LMVEDREDLG LKELQKGTDE LIAKMNATGK
VQGAFTVFKT NSPQIFADID RQACLQLNVP LQEAFAALQA TMGSRYVNDF NRFGRTWQVV
VQADTDFRND LADLKRIKVR NSHGEMVPLA SVCTLKEVSN PLVISRYNMY PAATVNGNVA
PGFSTGETLD MVEQLAASEL PIGLATEWSE LSYMERQAGN TGMFVFYMAI AFVFLVLAAL
YESWALPLAV ILVVPMCILS SITGVAYAAM DINVFTQIGF VVLIGLACKN AILIVEFARS
RRHEGATIRE ATLEACHLRL RPILMTSCAF ILGVIPLILA TGAGAEMRRT LGVAVFSGML
GVTCFGILLT PVFFYVIEHL SEAEFFRSSK IREPAQWVLD LIRLKPLWRG AQWSGRHLIS
ISDKIEERFR PHDPGSSSSG HS