| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_1639 |
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| Symbol | |
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| ID | 9138340 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Planctomyces limnophilus DSM 3776 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_014148 |
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| Strand | - |
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| Start bp | 2116497 |
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| End bp | 2117918 |
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| Gene Length | 1422 bp |
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| Protein Length | 473 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | |
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| Product | sigma-54 factor interaction domain-containing protein |
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| Protein accession | YP_003629670 |
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| Protein GI | 296121892 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.701414 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCAAGG AAATCAAGCC TGCAGAAACG AGTGAAGTCC GTGTCCGCGT GCTGATTGTG
GACAACGACG AAGCCCATGC ACAAGCCGTG GCTGACAGTC TGACGCGTGT GGGTTACGAC
TGCACAGTCG CTTCGGCCGG AGCAGAATCC GGAAAAAAGG CACTCGACCT GATTGAGGTT
GAGAACTTTG ATGTAATCAT CACTGAACTG ATGATGGACG AAGTGGATGG CCTGGAGATT
CTGCGCAGGT CAAAGGCTGA ACTGCCGGAT GCCGAAGTCA TTTTGCTGAC CGGACATGCC
TCGATCAAAT CGGCACTGAC AGCGGGACAG CACGGGGCAC ATACTTATCT CACAAAACCG
CTTGATATCA GTGAGTTGAG GCAAGCGGTG GACCGTGCCA GTTCGCGGAT TCGACTGCTG
AGAAAGACAT TTGAACTCAG CCGGCGACTC GATGAAAAGT TTGGCTTTGA AGGGGTGATT
GGCAACAGTC CTTCGATGCA CCGGCTGATC GAAAAGTTGA GGAGCGTGGC GCCGACTGAT
AGTACCGTCC TGATTCAGGG AGAAAGCGGG ACTGGCAAAG AACTCGTGGC GCGGGCGATC
CATCAGAACA GCGAACGCAA GAATAAGCCT TTTGTTCCGC TCAATATCTC GGCACTGCCG
GAGAGTATTC TCGAGAGCGA ACTGTTTGGT CACGAAGCCG GAGCATTCAC CGGTGCGGCG
ACGAAACGAA TCGGGAAATT CGAGTATGCC AACGGTGGCA CATTATTTCT GGATGAAGTG
GGCGAAATGC CCATGGCCAC ACAAATCAAA TTGCTGCGAG TCCTCGAAGA GCGTCGCATT
ACCAGGCTGG GTGCGAACGA CGAGATTCCG ATCAACGTCC GGCTCGTGGC TGCGACCAAT
GCTGATCTGC AGGACATGAT CAAGAAGGGA ACATTCCGTA AAGATCTTTA CTTCCGGCTT
TCAGTCGTCA CGATTGTCTT GCCACCACTC AGTGATCGAC GAGCAGACAT CCCGTTCCTG
ATTGATCATT TTCTCAAGCA GTTTGCCGAG CGCCAAAAGA GGCCGATTCC CACCGTTACC
CGTCAGGTTC AACAGGCATT GATGGCTTAC GCATGGCCAG GGAATATTCG TGAGCTGCGC
AATGTGGTGG AAGGGATGAT GGTGCTCGAC ATCGATGGCA AACTGGATGT GGATGATCTT
CCGGAAGGGA TTGGTGCTGG CCATCATGAA CACAGCGAAG TTGATCTCAT TCAGAATCCC
GCCGGGAATG ATGGACTCAT CGGGCGTTCG TTGAACGATG TCGAAAAGTA TTACATTGCC
CGGGCGCTGG AATTGACCGG TGGAAAGCGC GACGAGGCGG CCAATCTATT GGGAATTGGC
GAACGCACGC TCTATCGCAA GATTCGCGAG TATGAGCTGT AA
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| Protein sequence | MAKEIKPAET SEVRVRVLIV DNDEAHAQAV ADSLTRVGYD CTVASAGAES GKKALDLIEV
ENFDVIITEL MMDEVDGLEI LRRSKAELPD AEVILLTGHA SIKSALTAGQ HGAHTYLTKP
LDISELRQAV DRASSRIRLL RKTFELSRRL DEKFGFEGVI GNSPSMHRLI EKLRSVAPTD
STVLIQGESG TGKELVARAI HQNSERKNKP FVPLNISALP ESILESELFG HEAGAFTGAA
TKRIGKFEYA NGGTLFLDEV GEMPMATQIK LLRVLEERRI TRLGANDEIP INVRLVAATN
ADLQDMIKKG TFRKDLYFRL SVVTIVLPPL SDRRADIPFL IDHFLKQFAE RQKRPIPTVT
RQVQQALMAY AWPGNIRELR NVVEGMMVLD IDGKLDVDDL PEGIGAGHHE HSEVDLIQNP
AGNDGLIGRS LNDVEKYYIA RALELTGGKR DEAANLLGIG ERTLYRKIRE YEL
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