| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_1620 |
|---|
| Symbol | |
|---|
| ID | 9138321 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | - |
|---|
| Start bp | 2094121 |
|---|
| End bp | 2095914 |
|---|
| Gene Length | 1794 bp |
|---|
| Protein Length | 597 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | ribosomal protein S1 |
|---|
| Protein accession | YP_003629651 |
|---|
| Protein GI | 296121873 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTGACC GTCATCTGCT TCGCGAATAT TCCATCAGCG ACGACGAACT GGATCAGGCA
TTTGCCGCCT CGCTCGGCCT TGAAGATGCT GGCCTGGATC AAGAAGAAAT TGATGCCCTC
TACACGCCTC ACGGCGAAAC CTACGATGTC AATTCGATCA TCGAAGGGAC TGTGATCCGC
ATCGAAGGCG ACGAAGTTCT CATCGATATC GGCTACAAGA GCGAAGGGAT TGTTCCCCGC
GACGAATGGT CGGATGAAGA CGAACAGCCA ATTCCCGGCA TGCGCATTGC CGTGCTCCTC
GAAGAAATCG AGGATGAATT CGGTCTGATT ATGCTTTCCA AGAAGAAAGC CGATCGGATC
CGTGAGTGGG AAAAGGTCAT TCGCGAGCAC AAAGAAGGCG ACGTCGTCAA GGGCGAAGTC
GTTCGCAAGA TCAAGGGTGG TCTGCTCGTC AACATTGGCG TCAACGTCTT CCTGCCTGCT
TCTCAGGTGG ATATCCGTCG CCCACACGAT CTTGACTCGT ACAAAGGCCG CTCGATCGAG
TGCCTCATTC TCAAGATCGA TGAACAGCGC CGCAACATTG TGGTCTCTCG CCGCCGCCTG
ATTGAAGAGC AGCGCGAGAA GATGAAGAAG ACCCTGCTGG CCGACCTCAA GGAAGGCGAA
ATCCGCAAGG GAACCGTCAA GAACATCGCC GACTTCGGTG CGTTCGTTGA CCTCGGCGGT
ATCGATGGCT TGCTGCACAT TACAGATATG AGCTGGGGCC GTATTGGTCA CCCGAGCGAA
ATGGTCAAGA TTGACGATGA AGTCGAAGTG ATGATTCTGC ACATCGACCG GGATCGCGAA
AAGATCGCTC TCGGCCTGAA GCAGAAGGAC AAGAGCCCCT GGGACGATGT CGAAACCAAG
TACCCGGTTG GCACGAAAAT CAAGGGCGAT GTTGTCAACG TGATGAGCTA CGGCGCATTC
GTCAAGCTCG AAGACGGCAT CGAAGGCCTC GTGCACATCA GCGAAATGTC GTGGACGAAG
CGCGTCAATC ACCCATCGGA ACTGGTCAAC CCTGGCGACG AAGTCGAAGT GGTTGTACTG
AATATCAACA AGGACAAGCA GGAAATTTCG CTGGGGATGA AGCAGGCAAT GCCCAATCCC
TGGGATCAGG TTTCTGCCAA GTACCCACCA GGTACAATTG TCGAGGGAAC TGTTCGCAAC
CTCACCAATT ACGGTGCTTT CATCGAGCTC GAAGAGGGTG TCGACGGTCT GTTGCATGTC
AGCGATATGT CCTGGACACG CAAGATTTCG CACGCCAACG AAATGCTCAA GAAGGGCGAT
CTGCTCAAGT GCCAGGTGAT CTCGGTCGAC GAAGAGCGGA AGCGAATTGC CCTGGGTCTG
AAGCAGCTTG ACGAAGATCC ATGGGAAAAC CGCATCCCCA CGAAGTACCA GCCTGGTGAA
GTTGTCACCG GCAAGGTGAC GAAGATCACC AACTTTGGTG TCTTTGTGGA ACTGGAATCA
GAACTCGAAG GTCTCCTCCA CGTTTCCGAG CTGGCCGATC AGAAGATCGA GAACCCGGAA
ACCTTCGTGA AGGTGGGCGA CGAATTAGAA GTTCGTATTC TGCGAATCGA CCCAGTCGAT
CGTAAGATCG GCCTGAGCCG AAAGACCAGT GGCGAATTGC CGACCGAAGA GAGCAAACCA
GCCGAACAGG CAGCCGCAGC ACCTAAGCCG CGCGCTGAGC TCAAGGGTGG CACCGAAGGG
GCAGCCGGCC CACTCTTCAG TATGGGTGGC GATACAGGAT CGACTGAAGG TTAA
|
|---|
| Protein sequence | MVDRHLLREY SISDDELDQA FAASLGLEDA GLDQEEIDAL YTPHGETYDV NSIIEGTVIR
IEGDEVLIDI GYKSEGIVPR DEWSDEDEQP IPGMRIAVLL EEIEDEFGLI MLSKKKADRI
REWEKVIREH KEGDVVKGEV VRKIKGGLLV NIGVNVFLPA SQVDIRRPHD LDSYKGRSIE
CLILKIDEQR RNIVVSRRRL IEEQREKMKK TLLADLKEGE IRKGTVKNIA DFGAFVDLGG
IDGLLHITDM SWGRIGHPSE MVKIDDEVEV MILHIDRDRE KIALGLKQKD KSPWDDVETK
YPVGTKIKGD VVNVMSYGAF VKLEDGIEGL VHISEMSWTK RVNHPSELVN PGDEVEVVVL
NINKDKQEIS LGMKQAMPNP WDQVSAKYPP GTIVEGTVRN LTNYGAFIEL EEGVDGLLHV
SDMSWTRKIS HANEMLKKGD LLKCQVISVD EERKRIALGL KQLDEDPWEN RIPTKYQPGE
VVTGKVTKIT NFGVFVELES ELEGLLHVSE LADQKIENPE TFVKVGDELE VRILRIDPVD
RKIGLSRKTS GELPTEESKP AEQAAAAPKP RAELKGGTEG AAGPLFSMGG DTGSTEG
|
|---|
| |