Gene Plim_1392 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlim_1392 
Symbol 
ID9138087 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePlanctomyces limnophilus DSM 3776 
KingdomBacteria 
Replicon accessionNC_014148 
Strand- 
Start bp1773624 
End bp1774307 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content54% 
IMG OID 
ProductTrkA-N domain protein 
Protein accessionYP_003629425 
Protein GI296121647 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.643107 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCAAAGAG TCGCAATTGT TGGTCTTGGT CGATTTGGAA TCGCTGTCAT CGAGCAACTG 
GCCTCGACGC GGGCACAGGT GATCGCCATC GATACTTCGG CAGATGCGGT GGCTGATGTC 
AAAGATCTGG TGGATGTGGC TGTTGTGCTC GACGCCACCG ATGAACGGGC CTTGAGGGGG 
CAGGACGTTC ATAAATGTGA TTATCTGGTT GTAGCGATTG GCGAGAATTT CGAGGCAGCA 
CTTCTGACAG CAGTGCTGGC CAAGAAACTT GGCATTCCCA AGGTGATTGT AAGAGCCACC 
ACGTCGATGC ACGCACAGAT TTTTCTCAAG ATCGGTGCTG ACGAAGTGAT TCAGCCCGAA 
TCGGAAGCTG GCATTGCACT GGCGAGAAGG CTGGCCAACC CTTCACTCGA GGATTTCGTC 
GATCTGGGTG AAGGTTACAC GCTGATTGAA TTGAGAGCTC CCAGTGCTTT TCGTGGCAAG 
ACACTTCGCG AGCTGAATCT GCGAGCGAAA TATGGCGTCA ATCTGGTCGC CATCCGTCGG 
TCAATCCCAG CCCCGGCAGG GAGTGAACTC GAAGAGACTC GGAAAATGAT TGGCGTGCCC 
CAACCCGACG AAGTCATCGA GGAGCAGGAT ATCCTCATGC TGATTGGGGC GAATGAGAAT 
CTGGGTAAAT TGCCACACGA GTGA
 
Protein sequence
MQRVAIVGLG RFGIAVIEQL ASTRAQVIAI DTSADAVADV KDLVDVAVVL DATDERALRG 
QDVHKCDYLV VAIGENFEAA LLTAVLAKKL GIPKVIVRAT TSMHAQIFLK IGADEVIQPE 
SEAGIALARR LANPSLEDFV DLGEGYTLIE LRAPSAFRGK TLRELNLRAK YGVNLVAIRR 
SIPAPAGSEL EETRKMIGVP QPDEVIEEQD ILMLIGANEN LGKLPHE