| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_1377 |
|---|
| Symbol | |
|---|
| ID | 9138072 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | + |
|---|
| Start bp | 1752869 |
|---|
| End bp | 1756549 |
|---|
| Gene Length | 3681 bp |
|---|
| Protein Length | 1226 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | |
|---|
| Product | Exodeoxyribonuclease V |
|---|
| Protein accession | YP_003629410 |
|---|
| Protein GI | 296121632 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.246845 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAACTC CCCGCTACAC ACCTCAACAA ACGCGGGCCT TGACTGAGAA ATCGGTCTCG
ATCGCTCTTT CGGCAGGTGC TGGTTGTGGC AAAACCTTTG TGCTGACGAG AAGATTTCTC
GGGTATTTAA AGCCGGGGCC TGAGCAATAC CCGCTGACAT CGCTGGTGGC CATCACCTTT
ACCGATAAAG CCGCTCGCGA GATGCGGGAT CGGGTACGGG CCACTTGTCT GCAGCGTGTG
CGAGAATGTC CACCCGAAGA AGCTGACCAC TGGTTGAGTC TGCTGCGGGA TCTGGATCGA
GCACGCATCA GTACGATCCA CTCCTTTTGC GGAAATATCC TGCGTTCGCA TGCGATCGCG
AGTGGTCTCG ATCCCGAATT CACCACCCTC GAAGCGAGTG TGGCCGATTC GCTCCTGAGG
CAATCGATTG AAGCCTCAGC CACGCGATTG CTGGTCAACG ATCAACCTGC ATTTCGGCTG
CTGGCCGTCG ATTATGGTAT TGAGAAACTA CTCGAATCGT CAGGAATTCT CGTTCGACAA
CGGCAACTGA TCTCTCTAGC AGACTTTGCC GAAATGACAG CCGAAGAGTT GGCAGGGATC
TGGCATCGTT GGCTGAAAGA GACCGGCTGG CCAGCGTTTG TGCGGCAGAT CGAGCACCAG
CGGACGTTTG TCAGGCTCAG TGAATTCATC TCTCGAACAT CAGCCAATTC TCCCAAGCTT
GACGAGAAGC TGAAGATACT TCGACAGATC ATGGAGCAAT TGAAGAGTCA GCAAGACTCT
CCAGAGCCGG GGCGTCTGGC AGAATTGTTT GCGGAGTTAT CGCTTCAGGC GCGAGTGGTG
GGGGTGAAGC CTGATCATTG GGGATCTCCT GATGATCACG AACTGGCTAA GGAGTTGTTT
ACGCAGGTTC GTGACGATTG CAAAAAGTTG ATTGAAACCA TTCAACTCGC TCAAACGGAG
TTTGTCCCAT ACGCCGAGAA GAGCCTGGCA TGGCTCTCAG TCGCAGGTGA GTCAATCAGA
GATTACGAAT TAATCAAGAA GTCGCGAGCA TGTGTTGACT TTGATGATCT GCTGGTTTTG
AGCCGGGATT TGCTACGGAA CGATCTGACG GTGCGTCAGG CGTTGTCGCG CTCCATTCGT
GTGCTGATGG TGGATGAATT TCAGGATACG GACCCCGTTC AGGCCGATCT GGTCGAGATG
ATCTGCGGGA AGGAATTGAC GACAGGGAAG TTGTTCCTGG TGGGTGACCA GAAGCAAAGC
ATCTATCGCT TTCGAGGTGC TGATCCTCTG GTGTTCAGAT CGTTAAAAAG CAAAATTCCA
GCGGCTGGTC AACTCCCACT CACCATCAAC TTTCGCAGTC AGCCCCCGAT TCTGCACTTC
GTAAACATTC TGTTTCGGCG GGTGATGGGA GCAGACTATG AGGCTTTGGA ACCCTCTTTC
GCGGATGAGA AACCTGAACT TGAGCGGATT GAGTTTCTGT GGGCAACCAC GGATGTCGTT
GAGAACAAGG CGGTTCAGGG AAGTATCCCG AGCACAGTTC CCCTGGCGCA AGGATTGGCC
GATGAACAGG CCCGGGATGC TGCTGATGCG GAAAGTCAGG ATGTTGAAAA CATCGATGAT
GATTCCCGCT CTGATTCCGG TGAGAAGCAG ACTGCTCCTT TTCTGAGACG GCGTGAAGCG
GATTGGATTG CCCGTCGTAT TCTCGAGTTG CTGGCCGATC CAACACCGCG AATTCGGGAG
AAAAGTGGCC CGTGGCGAAC CATCGTTCCT GGCGACATTA CGATTTTGTT CCGGGCGTTG
ACGAACCTGG AGGTTTACGA ACAGGCGTTA GAAGCGGCGG GAATCGACTA TTATGTGGCG
GGTGGCCGAG CGTTCTTTGC CCAGCAGGAA ATCTATGATC TGGCCCACTT GTGTCAGTTT
CTGGATGACC CTGAGGATGG GTTCAGTCTC GTGGGCCTGT TACGCTCGCC ATTTTTCTGT
TTCAGCGATC CACTGATTCA TCGACTGGCT TCACGTGCGG GTGGTATCAC CCAGTCGCTG
TTTGCTGAAG CTTCGGTAGT CAGCGGTCTG TCGCCGGAAG AGACTGCACA GGTTCAGTTT
GCAGCCCAGA CTCTCGGTTC ACTCGTGGAG CAGCGGGATC ACTGGCCATT GGCGAGAATC
ATTCGCCGAG CCCTGGAATT GACGGGCTAT GAGGCCATTG TCTCTCAGGA GTTTCTCGGT
TCGCGGAAAC TGGCGAATGT TCATAAAGCG ATTGAACTGG CCCGACAGTT TGACCTGGCG
GGTGGTAGTC GTGCGGCGTT TGTGACTCAG CTGCGGGAAT CGATCGATCA GGAATCTCGC
GAGGAGTTAG CCGCCACACA TCCCGAATCG AGCAGTGTGG TGCGTTTGAT GTCGATCCAC
CAATCCAAGG GACTTGAGTT TCCAGTCGTC TTTGTGGCCG ATATGAATCG ACCGCGAAAG
ACTGAATCGC TCCCACCGAC GCTTCATCCG CAGTTAGGGG CTTTGGTGAC ACCTTCGAAC
CCCCTGGGTG AACGACAAAA ACATCCTGTG GGCCAATTCA TTGAGATCAT GGAAGAGGCT
GCCAGCCTCG AAGAGTATCA GCGTCTGCTG TATGTCGCTG CCACACGAGC CCGGGATCTG
TTGATCCTGT CTGCCGGGAT CAAAGGTTTT GATGAAGGAA AGTTTTCGCC GTGGATGCTG
GTCTTGAAGC AAGTCTTTCA TCTCGAGACA GGTCTCTTGC GGAATGATCC CTGGTTTGCG
AGCGGACATG AGGATGTGAA AACCCCGCAG GAGATTCCGC TCATTCGTAC TCATCATCAG
CCACCGCAAT TCATCGACCA CAGAGTTCAG CGACAGGGTG TTCACAAGCT GTCATTTCCA
CAGGTCTGGA ATGAACTAGA ACTGGCCGAA TCTTTGCCCT GGCCTCAACT CGTGGCGGAT
GTTCAGCGGG GTGCGGAAGG TCGCAGGCGA TTGAGTGTTT CGCGACTGGA GGAGTTTCAG
GAACAAAGTT CATCGAAATT GAAGAGTCTC GTTCCAGCAG GTGAATTGGA AGCACATTCG
GCGAGTCTCA GTCGCAGCGA TGCGGAACTG TTGGGAGAAA TGATTCATGG CGTACTGGAG
CGATTTGAAC CTCGCGCCGC AGAGGAGTCC GAAAAGGCTT TGCTCCATCG ACTGTGGCTG
TGGTGCCAGA GACAGCCTGC ACCACCTGGA GGCCAGATTC TGGAGCAGGC ACAGCAATGG
CTCAAGACGT TTGCATCGAC CGAGCTGATT GATGAACTGG CCATGGCCAG TGAACTGAAT
CGAGAACTGG AGTTCAGTCT CGATTGGAAA ATGACTGGAG AAGAGCCGAA ACGAGAAACA
GAGATCTATG GTCTGATCGA TGTCCTGATG AAGGATTCTC AGGATGATTG GATCATTCTC
GATTACAAGA CGAGTCGCCT TGCGGCTGGA GTAACTGATG AACTGCTGCT CCAGCCGTAT
CGATTGCAAT TGGGAACATA TGCCCTCGCC GTGCAGCGGC TTTTTGGTCG CCTTCCCAAA
AAAGCCGAAC TGATTTTTAT GCGTCCCAAG CCCCGCCGAG TGGTCTGGAA CATGGAGCAG
GTGCAAGTTT CCGATCTGGA ACAACTTGTG ACCGAGGCAA TCCATCAGTT GGATGCGGCA
CAGGCTTCGA GCTCATTCTG A
|
|---|
| Protein sequence | MSTPRYTPQQ TRALTEKSVS IALSAGAGCG KTFVLTRRFL GYLKPGPEQY PLTSLVAITF
TDKAAREMRD RVRATCLQRV RECPPEEADH WLSLLRDLDR ARISTIHSFC GNILRSHAIA
SGLDPEFTTL EASVADSLLR QSIEASATRL LVNDQPAFRL LAVDYGIEKL LESSGILVRQ
RQLISLADFA EMTAEELAGI WHRWLKETGW PAFVRQIEHQ RTFVRLSEFI SRTSANSPKL
DEKLKILRQI MEQLKSQQDS PEPGRLAELF AELSLQARVV GVKPDHWGSP DDHELAKELF
TQVRDDCKKL IETIQLAQTE FVPYAEKSLA WLSVAGESIR DYELIKKSRA CVDFDDLLVL
SRDLLRNDLT VRQALSRSIR VLMVDEFQDT DPVQADLVEM ICGKELTTGK LFLVGDQKQS
IYRFRGADPL VFRSLKSKIP AAGQLPLTIN FRSQPPILHF VNILFRRVMG ADYEALEPSF
ADEKPELERI EFLWATTDVV ENKAVQGSIP STVPLAQGLA DEQARDAADA ESQDVENIDD
DSRSDSGEKQ TAPFLRRREA DWIARRILEL LADPTPRIRE KSGPWRTIVP GDITILFRAL
TNLEVYEQAL EAAGIDYYVA GGRAFFAQQE IYDLAHLCQF LDDPEDGFSL VGLLRSPFFC
FSDPLIHRLA SRAGGITQSL FAEASVVSGL SPEETAQVQF AAQTLGSLVE QRDHWPLARI
IRRALELTGY EAIVSQEFLG SRKLANVHKA IELARQFDLA GGSRAAFVTQ LRESIDQESR
EELAATHPES SSVVRLMSIH QSKGLEFPVV FVADMNRPRK TESLPPTLHP QLGALVTPSN
PLGERQKHPV GQFIEIMEEA ASLEEYQRLL YVAATRARDL LILSAGIKGF DEGKFSPWML
VLKQVFHLET GLLRNDPWFA SGHEDVKTPQ EIPLIRTHHQ PPQFIDHRVQ RQGVHKLSFP
QVWNELELAE SLPWPQLVAD VQRGAEGRRR LSVSRLEEFQ EQSSSKLKSL VPAGELEAHS
ASLSRSDAEL LGEMIHGVLE RFEPRAAEES EKALLHRLWL WCQRQPAPPG GQILEQAQQW
LKTFASTELI DELAMASELN RELEFSLDWK MTGEEPKRET EIYGLIDVLM KDSQDDWIIL
DYKTSRLAAG VTDELLLQPY RLQLGTYALA VQRLFGRLPK KAELIFMRPK PRRVVWNMEQ
VQVSDLEQLV TEAIHQLDAA QASSSF
|
|---|
| |