Gene Plim_1116 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlim_1116 
Symbol 
ID9137803 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePlanctomyces limnophilus DSM 3776 
KingdomBacteria 
Replicon accessionNC_014148 
Strand- 
Start bp1417959 
End bp1418681 
Gene Length723 bp 
Protein Length240 aa 
Translation table11 
GC content54% 
IMG OID 
ProductABC transporter related protein 
Protein accessionYP_003629150 
Protein GI296121372 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.53256 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGTGA ACTGCAAGAA CGTGAAAATG TCCTTTAAGT CCGCTGCAGG AACGGTGAAC 
GTCTTGAAAG GGGTTGATTT CGAGGCCCCG ATTGGCAAAC TGACCATGCT CGTCGGGCCG 
AGCGGATGCG GCAAGACAAC CTTGATCTCG TTGATCGCAG GCTTGTTGCG TGGAGCCTCG 
GGGACAATGG AAGTCTTCGG CAATGAAGTG TTGACCATGT CGGCTTCAAT GCTCGTCCCA 
TATCGACTGA AAAACATCGG ATTCATCTTT CAGCAATACA ACTTGCTCGC AGGCTTAACC 
GCCTCGGAAA ATGTCGCAGT CCCGCTCGTC GCCAGTGGGA CAGGCTGGCC AGTCGCACTG 
GAAAAAGGGC GCATCTTACT GGGCAAACTG GGGATGAATG CCCACATCGA TAAACTTCCC 
AGTCAACTCT CCGGCGGCCA GCAGCAGCGA GTTGCCATCG CCAGAGCTCT GATCCATGAG 
CCCCGACTGC TGCTCTGCGA CGAACCGACC GCAGCACTTG ATGGACAATC GGGAAAAGTC 
GTAATGAATC TCCTCAAGGA GCTGGCGGTC GCCGATGATC GAGCCGCTAT TGTTGTCACT 
CATGATCCAC GAGTTTATAG CTTCGCTGAT CGCGTGGTAC ATATGGAAGA TGGTTTGGTC 
GCCAAGGTCG AAAGTATTGT GACTCCCAGC TCTACCGACA GCACGAACGA CACTGCACAT 
TGA
 
Protein sequence
MSVNCKNVKM SFKSAAGTVN VLKGVDFEAP IGKLTMLVGP SGCGKTTLIS LIAGLLRGAS 
GTMEVFGNEV LTMSASMLVP YRLKNIGFIF QQYNLLAGLT ASENVAVPLV ASGTGWPVAL 
EKGRILLGKL GMNAHIDKLP SQLSGGQQQR VAIARALIHE PRLLLCDEPT AALDGQSGKV 
VMNLLKELAV ADDRAAIVVT HDPRVYSFAD RVVHMEDGLV AKVESIVTPS STDSTNDTAH