Gene Plim_0681 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlim_0681 
Symbol 
ID9137362 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePlanctomyces limnophilus DSM 3776 
KingdomBacteria 
Replicon accessionNC_014148 
Strand
Start bp890489 
End bp892144 
Gene Length1656 bp 
Protein Length551 aa 
Translation table11 
GC content54% 
IMG OID 
ProductUDP-N-acetylmuramyl-tripeptide synthetase 
Protein accessionYP_003628727 
Protein GI296120949 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.170684 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCACCAC AGCATGCTCT CCCGGCATCA CTGAGTCTGA AAGATCATCT ACCGACCGCA 
GAGTTAATGG GGGCGGGTGA CATCTACTTC AACGATGTCA CACTCGACAG TCGTGAGTGT
CGCCCGAAAA CATTGTTTGT GGCTGCACCA GGTCGAAATA GTCATGGCAG CCAGTTTCTC
GAAGAGGCCA TTTCCCGCGG CGCTGTGGGA GTGGTGACTT CTCAAGTCTT ACCGAATTGC
CCGCTTCCCC AGTGTGTCGT GGCGAATCCT CGGGCGGCTT ATGCTTATCT CTCGCAATCG
CTGTACGGTC ATCCCGCCAG CCGCCTGAGA ATGATGGGAG TCACGGGGAC CAATGGAAAA
ACGACAGTCA GTTGGATGAC GAGAGCGCTG ATGGCCAAAT CCGGGTATCG GACGGGCTTA
TTGGGAACCG TGGAATACTT TGATGGTTAT CGTGCAGAGC CCTCGGTATT GACGACTCCT
GATGCGAAAT TGATGGCTTT CTGGCAGCAT CGCATGGTCA GCCGGGGGAC AACTCATCTG
GCCATGGAAC TTTCGAGTCA CTCTCTGGAT CAATCGCGAG CCGCAGCGTT ACCACTTGAT
TGTGCAATTG TTACCAATAT CACGCACGAT CATCTCGATT ATCATGGTGA TTTTGCCAGT
TATCGCGAAG CCAAAGCCCG GATTCTGGAT CTCGTTAAGC CAGGCGGAAC CATCGCATTG
CATATCAACG ACCCGGGAGC CGCCTCGCTG GCGAGTCTGG TGCCTGCGGA ATGCCGTCTG
ATTCGCTATG GCGTGAATGT CGATGCCGAG CTCTCGGCTC AGATTCTGAG TGAATCCTTA
AGCGGGACGA CATTCCGTGT GCAGTACCAG GGCCAGGTGA TGCAGATGAA GCTGCGGATT
CTGGGGCGGC ACAACATCGA GAACGCACTG GCAGCTTTAG CTGCCGGGCT GGCCTGGAAA
GTTCCCTTTT TATCGATGGC AGAAGCCTTG GAAGAGTTTC GGCCAGTGCC GGGAAGAATG
GAACGCTGCA CTTGGGGTGA ACCGTTTGAT ATTTTTGTGG ATTACGCTCA CACCCCTGAT
GCATTGAGCA GAGCGTTATG TTCGCTGCGC GGGCTGACGA GAGGCCGGTT GATTTGTGTC
TTTGGGGCTG GCGGAGATCG CGATGCCACC AAACGGCCAC TGCTGGGTCG TGCTGCCAGC
CAGGCCGATG TCGCCATCGT TACCAGTGAT AATCCGCGAT CAGAAAACCC CGAAAAGATC
ATTCAGCAGA TTTGTGATGG GGTGCCTGCT CAACAAGTCG AAGTCGTGAT TGAAGTCGAC
CGAAAGCTGG CAATTCAACA TGCCATTGAG CAGGCGTTGC CCGGTGACAT GATACTGATT
GCCGGGAAGG GACATGAGAG CGAGCAGATT ATCGGAGCCA GTCATCTCCC TTTCGATGAT
CGGCGAGTGG TGCGTGAGCT GCTGGAAAAT CGATCCAAGG AATCTTTGAA TCGGTTGCCA
CCAGCCAAAT CTTTCATTGC AAACTCTTAT TCAGCAAGTG GTTGTAGCGA TATGGCTCCC
GCTTCTTCGC CCATGGGGAT GGCTTTACAG ACGGAAGCCA TTCTGCCCAA TCCCGCCGCT
GTCGAAACAG ATTCCTTGCA GCGTGTGAGT GCCTGA
 
Protein sequence
MPPQHALPAS LSLKDHLPTA ELMGAGDIYF NDVTLDSREC RPKTLFVAAP GRNSHGSQFL 
EEAISRGAVG VVTSQVLPNC PLPQCVVANP RAAYAYLSQS LYGHPASRLR MMGVTGTNGK
TTVSWMTRAL MAKSGYRTGL LGTVEYFDGY RAEPSVLTTP DAKLMAFWQH RMVSRGTTHL
AMELSSHSLD QSRAAALPLD CAIVTNITHD HLDYHGDFAS YREAKARILD LVKPGGTIAL
HINDPGAASL ASLVPAECRL IRYGVNVDAE LSAQILSESL SGTTFRVQYQ GQVMQMKLRI
LGRHNIENAL AALAAGLAWK VPFLSMAEAL EEFRPVPGRM ERCTWGEPFD IFVDYAHTPD
ALSRALCSLR GLTRGRLICV FGAGGDRDAT KRPLLGRAAS QADVAIVTSD NPRSENPEKI
IQQICDGVPA QQVEVVIEVD RKLAIQHAIE QALPGDMILI AGKGHESEQI IGASHLPFDD
RRVVRELLEN RSKESLNRLP PAKSFIANSY SASGCSDMAP ASSPMGMALQ TEAILPNPAA
VETDSLQRVS A